野生棘胸蛙消化器官蛋白酶的分布及酶活力

本研究在不同p H和温度条件下以离体方式对野生棘胸蛙(Quasipaa spinosa)不同消化器官的蛋白酶活力进行了分析。结果表明,食道、胃、胰的蛋白酶活力受到酶体系p H的显著影响(P0.05),且随p H升高呈现典型的单峰型活力曲线。食道和胃的蛋白酶活力在p H为1.5时达到峰值,胰的酶活力在p H为9.6时达到峰值,而肠道酶活力在p H为7.4时达到峰值。各消化器官蛋白酶活力具有明显的温度依赖性(P0.05),酶活力随温度升高也均呈典型的单峰型活力曲线,不同消化器官的最大酶活力温度分别为,食道50℃、胃50℃、胰45℃、前肠45℃、后肠45℃、直肠45℃。在最大酶活力的p H和30℃条件下,各消化器官蛋白酶活力由高到低依次为胰、食道、胃、直肠、前肠、后肠。由此可见,蛋白酶在棘胸蛙消化系统的分布具有明确的规律性,且不同来源的蛋白酶需要在特定p H和温度下才能表现出最大的反应活性。     

Evaluation of method performance for oxidative stress biomarkers in urine and biological variations in urine of patients with type 2 diabetes mellitus and diabetic nephropathy

Background

Oxidative stress biomarkers such as superoxide dismutase (CuZnSOD), catalase (CAT) and malondialdehyde (MDA) play an important role in the pathogenesis or progression of numerous diseases. Data regarding the biological variation and analytical quality specifications (imprecision, bias and total error) for judging the acceptability of method performance for oxidative stress biomarkers in urine are conspicuously lacking in the literature. Such data are important in setting analytical quality specifications, assessing the utility of population reference intervals (index of individuality) and assessing the significance of changes in serial results from an individual (reference change value; RCV).

Materials and methods

20 patients with type 2 diabetes mellitus (T2DM), 20 patients with diabetic nephropathy (DN) and 14 healthy individuals as control were involved in this study. Timed first morning urine samples were taken from patients and healthy groups on the zero, 1st, 3rd, 5th, 7th, 15th and 30th days. Index of individuality and reference change value were calculated from within-subject and between-subject variations. Methods of oxidative stress biomarkers in human blood were adopted in human urine and markers were measured as spectrophotometrically. Also, analytical quality specifications for evaluation of the method performance were established for oxidative stress biomarkers in urine.

Results

Within-subject variations of oxidative stress biomarkers were significantly higher in patients with DN and T2DM compared to healthy subjects. MDA showed low individuality, and within-subject variances of MDA were larger than between-subject variances in all groups. However, CAT and CuZnSOD showed strong individuality, but within-subject variances of them were smaller than between-subject variances in all groups. RCVs of all analytes in diabetic patients were relatively higher, because of high within-subject variation, resulting in a higher RCV. Also, the described methodology achieves these goals, with analytical CVs of < 3.5% for all analytes. Goals for bias and total error were 6.0-7.9% and 12.5-23.3%, respectively.

Conclusions

RCVs concept for predicting the clinical status in diabetic patients represents an optimization of laboratory reporting and could be a valuable tool for clinical decision. Furthermore, for oxidative stress biomarkers’ measurements in urine, the desirable imprecision goals based on biological variation are obtainable by current methodologies.     

Improved bio-energy yields via sequential ethanol fermentation and biogas digestion of steam exploded oat straw

Using standard laboratory equipment, thermochemically pretreated oat straw was enzymatically saccharified and fermented to ethanol, and after removal of ethanol the remaining material was subjected to biogas digestion. A detailed mass balance calculation shows that, for steam explosion pretreatment, this combined ethanol fermentation and biogas digestion converts 85-87% of the higher heating value (HHV) of holocellulose (cellulose and hemicellulose) in the oat straw into biofuel energy. The energy (HHV) yield of the produced ethanol and methane was 9.5-9.8 MJ/(kg dry oat straw), which is 28-34% higher than direct biogas digestion that yielded 7.3-7.4 MJ/(kg dry oat straw). The rate of biogas formation from the fermentation residues was also higher than from the corresponding pretreated but unfermented oat straw, indicating that the biogas digestion could be terminated after only 24 days. This suggests that the ethanol process acts as an additional pretreatment for the biogas process.     

The ensemble folding kinetics of the FBP28 WW domain revealed by an all-atom Monte Carlo simulation in a knowledge-based potential

In this work, we apply a detailed all‐atom model with a transferable knowledge‐based potential to study the folding kinetics of Formin‐Binding protein, FBP28, which is a canonical three‐stranded β‐sheet WW domain. Replica exchange Monte Carlo simulations starting from random coils find native‐like (Cα RMSD of 2.68 Å) lowest energy structure. We also study the folding kinetics of FBP28 WW domain by performing a large number of ab initio Monte Carlo folding simulations. Using these trajectories, we examine the order of formation of two β‐hairpins, the folding mechanism of each individual β‐hairpin, and transition state ensemble (TSE) of FBP28 WW domain and compare our results with experimental data and previous computational studies. To obtain detailed structural information on the folding dynamics viewed as an ensemble process, we perform a clustering analysis procedure based on graph theory. Further, a rigorous P_fold analysis is used to obtain representative samples of the TSEs showing good quantitative agreement between experimental and simulated Φ values. Our analysis shows that the turn structure between first and second β strands is a partially stable structural motif that gets formed before entering the TSE in FBP28 WW domain and there exist two major pathways for the folding of FBP28 WW domain, which differ in the order and mechanism of hairpin formation. Proteins 2011. © 2011 Wiley‐Liss, Inc.     

Towards better accuracy for missing value estimation of epistatic miniarray profiling data by a novel ensemble approach

Epistatic miniarray profiling (E-MAP) is a powerful tool for analyzing gene functions and their biological relevance. However, E-MAP data suffers from large proportion of missing values, which often results in misleading and biased analysis results. It is urgent to develop effective missing value estimation methods for E-MAP. Although several independent algorithms can be applied to achieve this goal, their performance varies significantly on different datasets, indicating different algorithms having their own advantages and disadvantages. In this paper, we propose a novel ensemble approach EMDI based on the high-level diversity to impute missing values that consists of two global and four local base estimators. Experimental results on five E-MAP datasets show that EMDI outperforms all single base algorithms, demonstrating an appropriate combination providing complementarity among different methods. Comparison results between several fusion strategies also demonstrate that the proposed high-level diversity scheme is superior to others. EMDI is freely available at www.csbio.sjtu.edu.cn/bioinf/EMDI/.     

Greater effort boosts the affective taste properties of food

Actions can create preferences, increasing the value ascribed to commodities acquired at greater cost. This behavioural finding has been observed in a variety of species; however, the causal factors underlying the phenomenon are relatively unknown. We sought to develop a behavioural platform to examine the relationship between effort and reinforcer value in mice trained under demanding or lenient schedules of reinforcement to obtain food. In the initial experiment, expenditure of effort enhanced the value of the associated food via relatively lasting changes in its hedonic attributes, promoting an acquired preference for these reinforcers when tested outside of the training environment. Moreover, otherwise neutral cues associated with those reinforcers during training similarly acquired greater reinforcing value, as assessed under conditioned reinforcement. In a separate experiment, expenditure of effort was also capable of enhancing the value of less-preferred low-caloric reinforcers. Analysis of licking microstructure revealed the basis for this increased valuation was, in part, due to increased palatability of the associated reinforcer. This change in the hedonic taste properties of the food can not only serve as a basis for preference, but also guide decision-making and foraging behaviour by coordinating a potentially adaptive repertoire of incentive motivation, goal-directed action and consumption.     

新医改形势下医生劳动价值的体现

医疗服务的生产者是医生,其劳动有实质内涵,价值不同于药品器械,难以用货币衡量,不能用劳动时间来评价。突出医疗卫生事业公益性,探索医院发展要重视医生劳动价值,应进行医院成本核算。用价值理论剖析成本构成,控制医药消费,以病种、诊治次成本研究探索医疗服务定价机制;探讨药事（医疗）服务费种类、价格及核算方法要选择合适的试点,加强监督、考核是必要的。     

池州森林生态系统服务价值评估与分析

池州市是国家首个生态经济示范区,《中国21世纪议程》试点地之一,生态安徽建设试点市.基于LY/T1721-2008《森林生态系统生态服务价值评估规范》,采用实证研究、调查研究、文献研究等方法,估算了池州市森林生态系统生态服务价值.结果表明:2009年,池州市森林生态系统生态服务价值为443.30亿元,林果等实物产品价值...     

泽陆蛙(Fejervarya limnocharis)两性异形的个体发育和雌体繁殖

2010年3月下旬-7月上旬于浙江富阳市农田采集680只泽陆蛙(Fejervarya limnocharis),研究了泽陆蛙成体和幼体的个体大小和局部形态特征的两性异形;通过解剖雌体获得窝卵数、测量抱对个体获得形态数据,研究了雌体大小与生育力关系以及抱对两性个体体形大小的相关性.结果表明:捕获个体中,雌性和雄性成体的最小体长分别为33mm和30 mm;雄性成体个体数显著超过雌性成体,两性幼体个体数无显著差异;两性成体头部大小、四肢长随体长呈同速增长,眼径和体重随体长呈异速增长,两性幼体所有被检形态特征均随体长呈同速增长;雌性成体平均体长显著大干雄性成体,去除体长差异的影响后发现,除眼径无显著的两性差异外,其余被检形态特征均为雌性大于雄性;幼体除雌性体重大于雄性外,其余被检形态特征均无两性差异;窝卵数与雌体大小(体长和体重)呈显著的正相关;两性抱对个体的体长无显著相关性;泽陆蛙雄性成体体形小于雌性成体的个体大小两性异形模式可能决定于驱使雄性向较大体形发展的进化驱动力相对较弱,雌性增大体形可增加繁殖输出,故向较大体形发展的进化驱动力相对较强;除体重外,其余被检形态特征的两性异形均形成于性成熟之后.