Biomass, carbonate standing stock and production of the mediterranean coralCladocora caespitosa (L.)

Summary The Mediterranean coralCladocora caespitosa often occurs in large beds, i.e. populations of hemispherical clonies with stock densities varying between 1.9 and 4 coloneis ·m⁻². Laboratory measurements of volume, skeleton weight, surface and number of corallites per colony, coupled with mean annual growth rates evaluated through sclerochronology, allowed for the estimation of biomass, skeleton bulk density, calcimass (carbonate standing stock) and secondary production (both organic and inorganic) of twoC. caespitosa beds at 4 and 9 m depth. The mean colony biomass varied between 0.73 and 0.99 kg dw ·m⁻², corresponding to a calcimass between 2 and 5 kg CaCO₃·m⁻². Organic secondary production was 215.5–305.4 g dw of polyps ·m⁻²·y⁻¹, while the potential (mineral) production was 1.1–1.7 kg CaCO₃·m⁻²·y⁻¹, for the year 1996–1997. These values show thatC. caespitosa is one of the major carbonate producers within the Mediterranean and one of the major epibenthic species originating stable carbonate frameworks both in recent and past times.     

Effect of CO2 concentration on the PIC/POC ratio in the coccolithophore Emiliania huxleyi grown under light-limiting conditions and different daylengths

We compared the effect of CO₂ concentration ([CO₂], ranging from ∼5 to ∼34 μmol l⁻¹) at four different photon flux densities (PFD=15, 30, 80 and 150 μmol m⁻² s⁻¹) and two light/dark (L/D) cycles (16/8 and 24/0 h) on the coccolithophore Emiliania huxleyi. With increasing [CO₂], a decrease in the particulate inorganic carbon to particulate organic carbon (PIC/POC) ratio was observed at all light intensities and L/D cycles tested. The individual response in cellular PIC and POC to [CO₂] depended strongly on the PFD. POC production increased with rising [CO₂], irrespective of the light intensity, and PIC production decreased with increasing [CO₂] at a PFD of 150 μmol m⁻² s⁻¹, whereas below this light level it was unaffected by [CO₂]. Cell growth rate decreased with decreasing PFD, but was largely independent of ambient [CO₂]. The diurnal variation in PIC and POC content, monitored over a 38-h period (16/8 h L/D, PFD=150 μmol m⁻² s⁻¹), exceeded the difference in carbon content between cells grown at high (∼29 μmol l⁻¹) and low (∼4 μmol l⁻¹) [CO₂]. However, consistent with the results described above, cellular POC content was higher and PIC content lower at high [CO₂], compared to the values at low [CO₂], and the offset was observed throughout the day. It is suggested that the observed sensitivity of POC production for ambient [CO₂] may be of importance in regulating species-specific primary production and species composition.     

Effects of solvent, water activity and temperature on lipase and hydroxynitrile lyase enantioselectivity

The influence of the reaction conditions on the enantioselectivity of reactions catalysed by lipases or hydroxynitrile lyases (HNLs) in organic solvents was investigated. The lipases catalysed kinetic resolution of chiral secondary alcohols or chiral carboxylic acids and the HNLs catalysed asymmetric addition of hydrogen cyanide to aldehydes.

The temperature effects on enantioselectivity were studied in detail. From measurements of the enantiomeric ratio (E) at different temperatures the activation parameters ΔΔH^# and ΔΔS^# were determined. In the lipase-catalysed reactions the enthalpic and entropic effects on E always counteracted, while in a few of the HNL-catalysed reactions, ΔΔH^# and ΔΔS^# had opposite signs and therefore the effects cooperated to give high E values (−RTlnE = ΔΔG^# = ΔΔH^# − TΔΔS^#). In all the HNL-catalysed reactions and most of the lipase-catalysed ones, the enantioselectivity increased with decreasing reaction temperature. However, in one of the lipase-catalysed reactions, the enantioselectivity decreased with decreasing temperature. The theoretical background of these observations was discussed.

In the HNL-catalysed reactions, the enantioselectivity increased with increasing water content up to water saturation, while in the lipase-catalysed reactions the opposite trend was found in one case and in the others no significant effect was observed. Solvent mixtures of diisopropylether and hexane were used to obtain solvents with different log P values. The log P value of the solvent did not influence the enantioselectivity in the HNL-catalysed reactions, while the enantioselectivity increased with increasing log P value in two of the lipase-catalysed reactions. The reaction temperature was shown to be a very useful way to influence enzyme selectivity and the effects obtained could be rationalised. The influence of the reaction medium (solvent and water activity) is much more difficult to rationalise and predict.     

A Kinetic Examination of Penicillin Acylase Stability in Water-organic Solvent Systems at Different Temperatures

We have studied the thermal stability of penicillin acylase from Streptomyces lavendulae in water-organic solvent monophasic systems at the range of temperatures between 40 and 60°C. We found a linear correlation between the log λP value of the solvent and the activation free energy for denaturation ( ΔG d ) at all temperatures tested. Thermodynamic analysis of the results indicates that solvents with log λP ≤-2.3 have protective effects, whereas solvents with log λP ≥-1.8 are deleterious for penicillin acylase.     

Genotoxicity assessment in aquatic environments under the influence of heavy metals and organic contaminants

The genotoxicity of river water and sediment including interstitial water was evaluated by microscreen phage-induction and Salmonella/microsome assays. Different processes used to fractionate the sediment sample were compared using solvents with different polarities. The results obtained for mutagenic activity using the Salmonella/microsome test were negative in the water and interstitial water samples analysed using the direct concentration method. The responses in the microscreen phage-induction assay showed the presence of genotoxic or indicative genotoxic activity for at least one water sample of each site analysed using the same concentration method. Similar results were obtained for interstitial water samples, i.e. absence of mutagenic activity in the Salmonella/microsome test and presence of genotoxic activity in the microscreen phage-induction assay. Metal contamination, as evidenced by the concentrations in stream sediments, may also help explain some of these genotoxic results. Stream sediment organic extracts showed frameshift mutagenic activity in the ether extract detected by Salmonella/microsome assay. The concentrates evaluated by microscreen phage-induction assay identified the action of organic compounds in the non-polar, medium polar and polar fractions. Thus, the microscreen phage-induction assay has proven to be a more appropriate methodology than the Salmonella/microsome test to analyse multiple pollutants in this ecosystem where both organic compounds and heavy metals are present.     

Carbon dioxide fixation by reversible pyrrole-2-carboxylate decarboxylase and its application

Inducible pyrrole-2-carboxylate decarboxylase from Bacillus megaterium PYR2910 catalyzes the decarboxylation of pyrrole-2-carboxylate to stoichiometric amounts of pyrrole and CO₂. A unique feature of the homodimeric enzyme is its requirement for an organic acid such as acetate, propionate, butyrate or pimelate. A catalytic mechanism including a cofactor function of the organic acid was proposed. Due to an equilibrium constant of 0.3–0.4 M, the enzyme also catalyzes the reverse carboxylation of pyrrole after the addition of bicarbonate. For the synthesis of pyrrole-2-carboxylate, the reverse reaction was optimized and the equilibrium shifted towards the carboxylate. The product yield was 230 mM (25.5 g/l) pyrrole-2-carboxylate from 300 mM pyrrole in a batch reaction and 325 mM (36.1 g/l) from 400 mM pyrrole in a fed batch reaction, using both whole cells and the purified enzyme in a pH 8.0 reaction mixture with bicarbonate saturation of 1.9 M.     

A kinetic study of almond-β-glucosidase catalysed synthesis of hexyl-glycosides in low aqueous media: Influence of glycosyl donor and water activity

A variety of alkyl and aryl glycosides were investigated as substrates for almond β-glucosidase catalysed synthesis of hexyl-β- -glycosides in low aqueous hexanol media. The rate-limiting step in the organic media was determined to be the glycosylation of the enzyme. The kinetic constants V_max, K_m (glycosyl donor) and V_max/K_m were all influenced by the water activity and they all increased in value with increasing water activity. The increase in V_max/K_m was mainly determined by the increase in V_max and a plot of log(V_max/K_m) versus water activity resulted in a straight line with similar slopes for all glycosides but with different absolute values and thus the most reactive substrate p-nitrophenyl glucoside was the best one in the entire water activity range studied (0.53–0.96). The preference for the two competing acceptors, hexanol and water, was not affected by the aglycon part of the glucoside. Surprisingly, the ratio between trans glycosylation and hydrolysis increased with increasing water activity. A decrease in water activity caused an increase in equilibrium yield of hexyl glycoside, as expected, but was not beneficial for the kinetically controlled yield.     

Energy budgeting and emergy synthesis of rainfed maize–wheat rotation system with different soil amendment applications

Soil is a non-renewable resource and its preservation is essential for food security, ecosystem services and our sustainable future. Simultaneously, it is a major challenge to substitute non-renewable fossil based resources with renewable resources to reduce environmental load. In order to check soil erosion vis-a-vis degradation of sloppy lands of rainfed maize–wheat rotation system, fertilization with organic manure supplemented with inorganic fertilizers is required. In order to address these issues, substitution of 50% NPK through four organic manures viz. farmyard manure (FYM), vermicompost (VC), poultry manure (PM) and in situ green manuring (GM) of sunnhemp (Crotalaria juncea L.) were evaluated against 100% NPK through inorganic fertilizers and through FYM for energy budgeting and emergy synthesis during 2009–2014. Integrated use of FYM along with 50% NPK fertilizers could maintain the highest energy ratio (7.3), human energy profitability (142.4), energy productivity (0.22 kg MJ⁻¹), and energy profitability (6.3 MJ ha⁻¹) over other treatments. However, GM and inorganic fertilizers on equal NPK basis maintained the highest energy intensiveness (24.61 MJ US $⁻¹) and exhibited higher emergy yield ratio (2.66) and lower emergy investment ratio (0.60) and environmental loading ratio (3.74) which resulted into higher environmental sustainability index (0.71) over other treatments. Fertilization with organic manure (FYM) alone could not compete with other fertilized options to energy budgeting and emergy synthesis except specific energy. The study demonstrated that innovative integrated nutrient management of chemical fertilizers and organic manures particularly FYM for energy budgeting and GM for emergy synthesis may be considered as feasible and environment-friendly options for soil conservation, thereby benefiting a 50% saving on costly chemical fertilizers in non-OPEC countries which import most of its phosphorus and potassium fertilizers.