Plant carbon balance, evolutionary innovation and extinction in land plants

The plant fossil record was reviewed to highlight how consideration of plant carbon balance strengthens our understanding of various evolutionary innovation and extinction events. Following a brief physiological primer to carbon acquisition and allocation in C3‐plants, specific evolutionary events are discussed in connection with postulated carbon‐based mechanisms. Primary topics include: (i) the evolution of plants with the C4‐photosynthetic pathway; (ii) the surprising lack of plant extinctions during the Pleistocene (1.6 million years ago, Ma); (iii) the trend toward declining plant diversity and increasing rates of herbivory across the Palaeocene/Eocene transition (57–52 Ma); and (iv) megaherbivore extinctions at the end of the Pleistocene (10 thousand years ago, Ka). A framework is presented for testing hypotheses on the cause–effect relationships between global carbon cycling, plant carbon dynamics and the evolution of terrestrial ecosystems.     

The quality of organic matter mediates the response of heterotrophic biofilms to phosphorus enrichment of the water column and substratum

1. Heterotrophic biofilms are important drivers of community respiration, nutrient cycling and decomposition of organic matter in stream ecosystems. Both organic matter quality and nutrient levels have been shown to affect biofilm biomass and activity individually, but both factors have rarely been manipulated simultaneously. 2. To experimentally manipulate the organic matter quality and phosphorus (P) levels of both the substratum and water column, we first used cellulose cloth as a low‐quality organic material and enhanced its quality and P‐content by amending the underlying agar with maltose and P, respectively (Experiment I). To manipulate water column P, artificial substrata were incubated in low‐ and high‐P sites of a whole‐stream P‐enrichment in lowland Costa Rica. 3. Results from Experiment I suggest that heterotrophic biofilm respiration on cellulose cloth is co‐limited by carbon (C) and P. Biofilm respiration responded in an additive manner to combined effects of maltose and P‐enrichment of water column and synergistically to maltose and high‐P in substrata. 4. As decomposing organic matter that supports heterotrophic biofilms varies naturally in its labile C content along with other physical and chemical properties, we conducted a second experiment (Experiment II) in which we amended leaf discs from two species (Trema integerrima, a labile C source and Zygia longifolia, a recalcitrant C source) with maltose. We incubated the substrata in low‐ and high‐P sites of the P‐enrichment stream. 5. Results from Experiment II indicate that biofilm respiration on a labile C source (Trema) was not C‐limited, while biofilm respiration on a recalcitrant C source (Zygia) was C‐limited. Phosphorus stimulated the biofilm respiration and breakdown rate on Trema, but not on Zygia, supporting the hypothesis that the stimulatory effect of P‐enrichment is dependent on the availability of labile C in decomposing leaves. 6. Our results suggest that the interactive effects of organic matter quality and nutrient loading of streams can significantly increase microbial biofilm activity, potentially altering the trophic base of stream food webs. Researchers should consider both the organic matter quality and the enrichment of both water column and substrata to better predict the effects of anthropogenic nutrient loading to stream the ecosystems.     

Carbonic anhydrase in relation to higher plants

The review incorporates recent information on carbonic anhydrase (CA, EC: 4.2.1.1) pertaining to types, homology, regulation, purification, in vitro stability, and biological functions with special reference to higher plants. CA, a ubiquitous enzyme in prokaryotes and higher organisms represented by four distinct families, is involved in diverse biological processes, including pH regulation, CO₂ transfer, ion exchange, respiration, and photosynthetic CO₂ fixation. CA from higher plants traces its origin with prokaryotes and exhibits compartmentalization among their organs, tissues, and cellular organelles commensurate with specific functions. In leaves, CA represents 1–20 % of total soluble protein and abundance next only to ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBPCO) in chloroplast, facilitating CO₂ supply to phosphoenol pyruvate carboxylase in C₄ and CAM plants and RuBPCO in C₃ plants. It confers special significance to CA as an efficient biochemical marker for carbon sequestration and environmental amelioration in the current global warming scenario linked with elevated CO₂ concentrations.     

Photosynthetic performance of vegetative and reproductive structures of green hellebore (<Emphasis Type="Italic">Helleborus viridis</Emphasis> L. agg.)

Photosynthetic irradiance response of vegetative and reproductive structures of the green-flowered deciduous perennial green hellebore was studied by the comparative use of chlorophyll (Chl) fluorescence techniques and gas exchange measurements. All the Chl-containing organs (leaves, sepals, stalks, and fruits) examined were photosynthetically active showing high intrinsic efficiencies of photosystem 2 (F_v/F_m: 0.75–0.79) after dark adaptation. Even in the smaller fertile and sterile parts of the flower (nectaries and anthers) a remarkable photosynthetic competence was detected. With increasing photon flux densities (PFD) electron transport rates, actual quantum yields, and photochemical quenching coefficients of the main photosynthetic organs decreased in the order: leaf>sepal>fruit>stalk. At moderate to high PFDs the sepals achieved maximum electron transport rates corresponding to about 80 % of concomitant mature leaves. In contrast, maximum net photosynthetic rate of the sepals [2.3 mol(CO₂) m^–2 s^–1] were less than one fourth of the leaves [10.6 mol(CO₂) m^–2 s^–1]. This difference is explained by a 70–80 % lower stomatal density of sepals in comparison to leaves. As the basal leaves emerge late during fruit development, the photosynthetically active sepals are a major source of assimilates, contributing more than 60 % of whole-plant CO₂ gain in early spring. The ripening dehiscent fruits are characterized by an effective internal re-fixation of the respirational carbon loss and thus additionally improve the overall carbon budget.     

Cereulide-producing strains of <Emphasis Type="Italic">Bacillus cereus</Emphasis> show diversity

Producers of cereulide, the emetic toxin of Bacillus cereus, are known to constitute a specific subset within this species. We investigated physiological and genetic properties of 24 strains of B. cereus including two high cereulide producers (600–1,800 ng cereulide mg⁻¹ wet weight biomass), seven average producers (180–600 ng cereulide mg⁻¹ wet weight biomass), four low cereulide producers (20–160 ng cereulide mg⁻¹ wet weight biomass) and 11 non-producers representing isolates from food, food poisoning, human gut and environment. The 13 cereulide producers possessed 16S rRNA gene sequences identical to each other and identical to that of B. anthracis strains Ames, Sterne from GenBank and strain NC 08234–02, but showed diversity in the adk gene (two sequence types), in ribopatterns obtained with EcoRI and PvuII (three types of patterns), in tyrosin decomposition, haemolysis and lecithin hydrolysis (two phenotypes). The cereulide-producing isolates from the human gut represented two ribopatterns of which one was novel to cereulide-producing B. cereus and two phenotypes. We conclude that the cereulide-producing B. cereus are genetically and biochemically more diverse than hitherto thought.     

Kinetics of ethanol and acetaldehyde release suggest a role for acetaldehyde production in tolerance of rice seedlings to micro-aerobic conditions

BACKGROUND AND AIMS: This paper examines the basis of the greater tolerance of an indica rice cultivar FR13A to complete submergence compared with relatively intolerant japonica rice CT6241. We study whether this superior tolerance is related to its greater tolerance to O2 shortage and to an ability to run a more favourable rate of alcoholic fermentation during and after O2 deprivation. METHODS Fermentation products were analysed using sensitive laser-based photoacoustics at high time resolution to establish patterns and rates of ethanol and acetaldehyde emission by intact rice seedlings exposed to micro-aerobic (0.05-0.5 % O2) or zero O2 supply, and also during their return to air. Oxygen and CO2 emission or uptake was also quantified. KEY RESULTS: In the dark, no acetaldehyde and ethanol emission was observed until external O2 concentration in a gas phase decreased to 相似文献   

Response of respiration of soybean leaves grown at ambient and elevated carbon dioxide concentrations to day-to-day variation in light and temperature under field conditions

BACKGROUND AND AIMS: Respiration is an important component of plant carbon balance, but it remains uncertain how respiration will respond to increases in atmospheric carbon dioxide concentration, and there are few measurements of respiration for crop plants grown at elevated [CO(2)] under field conditions. The hypothesis that respiration of leaves of soybeans grown at elevated [CO(2)] is increased is tested; and the effects of photosynthesis and acclimation to temperature examined. METHODS: Net rates of carbon dioxide exchange were recorded every 10 min, 24 h per day for mature upper canopy leaves of soybeans grown in field plots at the current ambient [CO(2)] and at ambient plus 350 micromol mol(-1) [CO(2)] in open top chambers. Measurements were made on pairs of leaves from both [CO(2)] treatments on a total of 16 d during the middle of the growing seasons of two years. KEY RESULTS: Elevated [CO(2)] increased daytime net carbon dioxide fixation rates per unit of leaf area by an average of 48 %, but had no effect on night-time respiration expressed per unit of area, which averaged 53 mmol m(-2) d(-1) (1.4 micromol m(-2) s(-1)) for both the ambient and elevated [CO(2)] treatments. Leaf dry mass per unit of area was increased on average by 23 % by elevated [CO(2)], and respiration per unit of mass was significantly lower at elevated [CO(2)]. Respiration increased by a factor of 2.5 between 18 and 26 degrees C average night temperature, for both [CO(2)] treatments. CONCLUSIONS: These results do not support predictions that elevated [CO(2)] would increase respiration per unit of area by increasing photosynthesis or by increasing leaf mass per unit of area, nor the idea that acclimation of respiration to temperature would be rapid enough to make dark respiration insensitive to variation in temperature between nights.     

Modeling available 2,4-dichlorophenoxyacetic acid in a tissue culture medium containing activated carbon

Clonal propagation of high-value forest trees by somatic embryogenesis can help meet industry needs for uniform and high quality raw materials. Low embryogenic tissue initiation frequencies for loblolly pine (Pinus taeda L.) pose a limitation in work towards commercialization of this technology. At the time our research began most work on somatic embryo culture initiation in loblolly pine reported success in the range of 1–5%. Activated carbon (AC) has been reported to improve many tissue culture systems including embryogenic tissue initiation in Douglas-fir. To improve initiation frequencies in loblolly pine, the development of an AC-containing system was explored. In order to better understand the availability of 2,4-dichlorophenoxyacetic acid (2,4-D) in initiation medium, we tracked media surface concentrations of free or available 2,4-D. Media containing 1/2 modified P6 salts, 1.5% maltose, 2% myo-inositol, case amino acids, glutamine, vitamins, and 0.4% Gelrite were modified to include 0.625 – 2.5 g l^–1 of activated carbon (Sigma C-9157, acid washed) and 110 –440 mg l^–1 2,4-D. Adsorption and availability of 2,4-D in AC-containing medium was tracked by C¹⁴ labeled 2,4-D present in surface moisture absorbed into filter paper. High correlations were found between–available 2,4-D and time when AC and initial 2,4-D concentrations were held constant,–available 2,4-D and AC concentration when initial added 2,4-D and time were held constant, and–available 2,4-D and initial 2,4-D when AC and time were held constant.All of these relationships were exponential, not linear. Multiple regression models inputting initial 2,4-D added to medium in mg l^–1, activated carbon added to medium in %, and time in days, were able to explain 85–88% of the variability in available 2,4-D. These models can be used to achieve target levels of available 2,4-D by adjustment of initial 2,4-D levels or AC content.     

Regional variation in soil carbon and δ<Superscript>13</Superscript>C in forests and pastures of northeastern Costa Rica

Recent studies suggest that the direction and magnitude of changes in soil organic carbon (soil C) pools following forest-to-pasture conversion in the tropics are dependent upon initial soil conditions and local factors (e.g. pre-conversion soil C content, soil texture, vegetation productivity, and management practices). The goal of this study was to understand how landscape-scale variation in soil-forming factors influenced the response of soil C pools to forest clearing and pasture establishment in northeastern Costa Rica. We measured soil C and its stable isotopic composition in 24 paired pasture and reference forest sites distributed over large gradients of edaphic characteristics and slope throughout a 1400 km² region. We used the large difference in stable C isotopic signatures of C3 vegetation (rain forest) versus C4 vegetation (pasture grasses) as a tracer of soil C dynamics. Soil C pools to 30 cm depth ranged from 26% lower to 23% higher in pastures compared to paired forests. The presence of non-crystalline clays and percent slope explained between 27 and 37% of the variation in the direction and magnitude of the changes in soil C storage following pasture establishment. Stable carbon isotopes (¹³C) in the top soil (0–10 cm) showed a rapid incorporation of pasture-derived C following pasture establishment, but the vegetation in these pastures never became pure C4 communities. The amount of forest-derived soil C in pasture topsoils (0–10 cm) was negatively correlated to both pasture age and the concentrations of non-crystalline iron oxides. Together these results imply that site factors such as soil mineralogy are an important control over soil C storage and turnover in this region.