A novel numerical optimization algorithm inspired from weed colonization

This paper introduces a novel numerical stochastic optimization algorithm inspired from colonizing weeds. Weeds are plants whose vigorous, invasive habits of growth pose a serious threat to desirable, cultivated plants making them a threat for agriculture. Weeds have shown to be very robust and adaptive to change in environment. Thus, capturing their properties would lead to a powerful optimization algorithm. It is tried to mimic robustness, adaptation and randomness of colonizing weeds in a simple but effective optimizing algorithm designated as Invasive Weed Optimization (IWO). The feasibility, the efficiency and the effectiveness of IWO are tested in details through a set of benchmark multi-dimensional functions, of which global and local minima are known. The reported results are compared with other recent evolutionary-based algorithms: genetic algorithms, memetic algorithms, particle swarm optimization, and shuffled frog leaping. The results are also compared with different versions of simulated annealing — a generic probabilistic meta-algorithm for the global optimization problem — which are simplex simulated annealing, and direct search simulated annealing. Additionally, IWO is employed for finding a solution for an engineering problem, which is optimization and tuning of a robust controller. The experimental results suggest that results from IWO are better than results from other methods. In conclusion, the performance of IWO has a reasonable performance for all the test functions.     

Numerical simulations of surface plasmon resonance system for monitoring DNA hybridization and detecting protein-lipid film interactions

This paper presents a simple method to extract information about thin organic films from surface plasmon resonance (SPR) spectra. From numerical simulations it was found that a shift (Δθ _SPR) of an absorption peak in the SPR spectrum was directly proportional to the product of the thin organic film thickness and the refractive index difference between the thin organic film and a buffer soaking the sample. It was also found that Δθ _SPR was not sensitive to the thin organic film support of a gold film and a glass cover slip. Relationships between Δθ _SPR and distributions of macromolecule structures, in the thin organic films were theoretically established. Formulae were derived for a homemade SPR system to calculate length, transverse area, density and surface concentration of macromolecules in the thin organic film. The validity of these treatments was checked by precisely measuring the size of a single distearoylphosphatidylcholine molecule on a gold-supported phospholipid film; by quantitatively monitoring hybridization of synthesized oligonucleotides strands based on a biotin/avidin system; and by quantitatively detecting the steric hindrance of rabbit C-reactive protein specifically bound to phospholipid monolayers composed of synthesized lipids. Received: 4 May 1998 / Revised version: 27 July 1998 / Accepted: 27 August 1998     

Anthropometry and numerical taxonomy in clinical genetics: An example of applied biological anthropology

Biological anthropologists can contribute a unique perspective as well as technical expertise to the diagnosis and classification of genetic disorders. Anthropometry has been used with increasing frequency to characterize syndromes and to establish ranges of variation within syndromes. The specific anthropometric-radiologic technique of metacarpophalangeal pattern profile analysis has proven useful in discriminating individuals with the Prader-Labhart-Willi (PLW) syndrome from unaffected persons. Analysis of these data also indicate a negative correlation between age and Z-score transformations of individual hand bone lengths. These findings sound a cautionary note to clinical investigators who would use the Z-score transformation to standardize for age and sex. Problems encountered in the classification of genetic syndromes afford many parallels with those faced by anthropologists in the classification of living and fossil populations. The reliance on “key” traits and the necessity of focusing on pedigree analysis results in a deemphasis of the total range of variation and typological thinking. Application of numerical taxonomic techniques to the classification of the heterogeneous connective tissue disease osteogenesis imperfecta (OI) illustrates the heuristic value of this technique and points out the need to consider phenotypic overlap when defining typologies. Clinical genetics affords just one example of an area in medicine where the unique training and generalist perspective of the biological anthropologist is in demand. The decline in the availability of positions in the traditional academic habitat for biological anthropologists makes it imperative that graduate students be aware of alternatives and that they obtain training in the practical skills which such alternatives will demand.     

Magnesium gating of cardiac gap junction channels

We aimed to study kinetics of modulation by intracellular Mg²⁺ of cardiac gap junction (Mg²⁺ gate). Paired myocytes of guinea-pig ventricle were superfused with solutions containing various concentrations of Mg²⁺. In order to rapidly apply Mg²⁺ to one aspect of the gap junction, the non-junctional membrane of one of the pair was perforated at nearly the connecting site by pulses of nitrogen laser beam. The gap junction conductance (G_j) was measured by clamping the membrane potential of the other cell using two-electrode voltage clamp method. The laser perforation immediately increased G_j, followed by slow G_j change with time constant of 3.5 s at 10 mM Mg²⁺. Mg²⁺ more than 1.0 mM attenuated dose-dependently the gap junction conductance and lower Mg²⁺ (0.6 mM) increased G_j with a Hill coefficient of 3.4 and a half-maximum effective concentration of 0.6 mM. The time course of G_j changes was fitted by single exponential function, and the relationship between the reciprocal of time constant and Mg²⁺ concentration was almost linear. Based on the experimental data, a mathematical model of Mg²⁺ gate with one open state and three closed states well reproduced experimental results. One-dimensional cable model of thirty ventricular myocytes connected to the Mg²⁺ gate model suggested a pivotal role of the Mg²⁺ gate of gap junction under pathological conditions.     

黑龙江省三江平原丹顶鹤的数量分布

在地面调查的基础上,我们使用Y-11轻型飞机对黑龙江省三江平原地区的丹顶鹤的数量分布近行了调查,调查时飞行高度80米,航速140公里/小时,续航里程共3748公里。调查结果表明,丹顶鹤在三江平原主要分布在8个地区,其中嘟噜河下游、洪河自然保护区、七星河流域和兴凯湖低地是主要繁殖地,总数量共309只。     

Simulation study on water quality based on sediment release flume experiment in Lake Taihu, China

Sediments have a significant influence on the overlying water, and nutrient release from sediments is an important source for lake eutrophication, particularly in shallow lakes. Sediment resuspension is primarily driven by wind-induced currents. In this research, the correlation between release rate of suspended sediment and flow velocity was studied, and an experiment on hydrodynamic forces was conducted in a rectangle flume using water and sediments collected from three sites in Lake Taihu, a eutrophic lake in China. It was shown that the starting velocities of sediment in Lake Taihu at three different incipient standards gained from the experiment were 15, 30, and 40 cm s⁻¹ and the release rate of suspended sediment could reach up to 643.4, 5377.1, and 13980.5 g m⁻² d⁻¹, respectively. Based on the experiment, a water quantity and quality numerical model of wind-induced current with sediment pollution for Lake Taihu was developed. The model was calibrated and validated by applying it to the study of the water quality of Lake Taihu. The calculated values were generally in good agreement with field observations, which indicated that the developed model could represent the dynamics of sediment resuspension to a certain extent. This study provides a new approach and a practical tool for planning and management policy and operations to protect the water quality and ecosystems of shallow lakes.     

西部某些根瘤菌的数值分类和16S rDNA PCR-RFLP分析

选用61株分离自我国西北地区的野豌豆、棘豆、苜蓿和草木樨根瘤菌和4株已知参比菌株,进行了营养利用、抗生素抗性和耐逆性等13个表型性状研究,通过MINTS软件分析,得到了数值分类树状图,发现全部供试菌株在79％的相似性水平上,分为5个群。对57株未知菌株和10株参比菌株16SrDNAPCR－RFLD分析,发现共具有20个遗传图谱类型,聚类分析树状图表明所有菌株共分为5个系统发育分支,与数值分类结果有较好的一致性。     

链格孢属(丝孢纲)数值分类研究初探

聚类分析树状图上Alternarla与其相似属Ulocladium、Stemphylium的种明确地分为三个表观群。36个OTU's,23个链格孢属的种,进一步形成四个清晰的亚表观群,恰与椐分生孢子喙的特征而划分的组,即无喙组、假喙组、真喙组和锥状真喙组相吻合。本试验系统中,相似属间、种间和种内的相似性值是在具体试验条件下确定的。其意义在于通过对大量有用分类信息的综合比较分析,以相似性值的形式,为不同等级单位分类地位的确定提供相应定量化的标准,从而能够比较全面地评价一个分类单位.根据研究结果,建议将Alternariamali Roberts作为细链格孢的一个分化型,即Alternarin tenuis C.G.Nees f.sp.,mali。