Global profiling of reactive oxygen and nitrogen species in biological systems: high-throughput real-time analyses

Herein we describe a high-throughput fluorescence and HPLC-based methodology for global profiling of reactive oxygen and nitrogen species (ROS/RNS) in biological systems. The combined use of HPLC and fluorescence detection is key to successful implementation and validation of this methodology. Included here are methods to specifically detect and quantitate the products formed from interaction between the ROS/RNS species and the fluorogenic probes, as follows: superoxide using hydroethidine, peroxynitrite using boronate-based probes, nitric oxide-derived nitrosating species with 4,5-diaminofluorescein, and hydrogen peroxide and other oxidants using 10-acetyl-3,7-dihydroxyphenoxazine (Amplex® Red) with and without horseradish peroxidase, respectively. In this study, we demonstrate real-time monitoring of ROS/RNS in activated macrophages using high-throughput fluorescence and HPLC methods. This global profiling approach, simultaneous detection of multiple ROS/RNS products of fluorescent probes, developed in this study will be useful in unraveling the complex role of ROS/RNS in redox regulation, cell signaling, and cellular oxidative processes and in high-throughput screening of anti-inflammatory antioxidants.     

乐果对四尾栅藻碳、氮、磷营养缺乏的替补效应

有机磷农药属于有机磷化合物的范畴,一般是指磷(膦)酸酯、硫代磷酸酯、磷酰胺酯类有机磷化合物。因其具有杀虫力强、使用范围广、残留期较短等特点,从20世纪80年代开始,有机磷农药很快就取代了有机氯农药成为我国农药市场份额最大,使用最多最广的一代新生     

The influence of an intermittent food supply on the feeding behaviour of Yoldia hyperborea (Bivalvia: Nuculanidae)

Yoldia hyperborea (Lovén) is a protobranch bivalve of circumboreal distribution and an important bioturbator of muddy sediments of cold-water embayments in Newfoundland, Canada, where it is exposed to a strong seasonal input of sinking phytoplankton during spring, sporadic events of sediment resuspension, and sediment of low nutritional value during winter. To explain field-observed patterns of population dynamics, we quantified the behavioural response of Y. hyperborea to pulses of settling algae and sediment resuspension events, and hypothesised that Y. hyperborea behaviour is modified during settling of nutrient-rich organic matter. Yoldia hyperborea responded rapidly to the arrival of settling microalgae by extending its siphons into the water column. Once the pulse of algal material reached the sediment the animals partially emerged, extended the palp proboscides over the sediment surface and maintained close contact with the area of highest algal concentration. In contrast, the activity of animals not exposed to settling algae or to resuspended sediment was primarily restricted to strata below the sediment surface. Thus the predominant subsurface feeding behaviour of Yoldia hyperborea is switched to surface deposit-feeding as a response to cues contained in microalgae. Results suggest active suspension-feeding during algal sedimentation events, although deposit-feeding resumes once the algae are no longer in suspension, and suspension-feeding is probably of little nutritional significance. The rapid behavioural response of Y. hyperborea to the influx of high quality food, such as fresh microalgae, is probably an adaptive foraging strategy to a food-limited environment and suggests higher bioturbation rates of surface sediments during spring, a key role being played by the protobranch in redistribution of labile phytodetritus within the benthos.     

Oenococcus oeni preference for peptides: qualitative and quantitative analysis of nitrogen assimilation

Optimization of malolactic fermentation in wine depends mainly on better understanding of nitrogen nutritional requirements of Oenococcus oeni. Four widely used starter strains and the reference ATCC BAA-1163 strain were grown in media containing different N sources: free amino acids, oligopeptides (0.5–10 kDa) or polypeptides (> 10 kDa). Amino acid auxotrophies were determined by the single omission technique. The tested strains were indifferent to only two to four amino acids and two of the starter strains appeared to be particularly demanding. Nitrogen consumption was investigated and a significant level of nitrogen was consumed by O. oeni only in the free amino acid medium. In media containing complex nitrogen sources, a global balance above 5 mg N l⁻¹ was enough to ensure biomass formation of all tested strains. Moreover, for all strains, bacterial growth yield was higher in the presence of nitrogen from peptides than that from free amino acids. However, no direct relationship between the bacterial growth level and the amount of nitrogen metabolized could be established. These findings were discussed in relation to the physiology of wine malolactic bacteria.     

Nutritional significance of the selective ingestion of Albizia zygia gum exudate by wild chimpanzees in Bossou, Guinea

The selective ingestion of plant gum exudates by chimpanzees has been frequently observed at various study sites. At Bossou, Guinea, chimpanzees also frequently ingest Albizia zygia gum exudate. A functional explanation for this behavior is lacking, so we evaluated its possible contribution of energy in the form of short-chain fatty acids (SCFA) as well as minerals. An in vitro fermentation study of A. zygia gum using the fecal bacteria of a Bossou chimpanzee showed that carboxylic acids were produced with a 6-hr lag phase up to 44 mmol/l by 18 hr of incubation. Acetate was the most abundant acid produced, followed by lactate and propionate. The energy supplied from the fermentation of a piece of gum exudate (20-30 g) was negligible in comparison with the estimated daily energy requirements of chimpanzees in the wild. However, A. zygia gum exudate (20-30 g) can supply sufficient amounts of calcium, manganese, magnesium, and potassium to fulfill the daily requirements for these minerals in chimpanzees.     

Reproductive organs regulate leaf nitrogen metabolism mediated by cytokinin signal

The metabolism of vegetative organs in plants changes during the development of the reproductive organs. The regulation of this metabolism is important in the control of crop productivity. However, the complexity of the regulatory systems makes it difficult to elucidate their mechanisms. To examine these mechanisms, we constructed model experiments using Arabidopsis to analyze metabolic and gene expression changes during leaf-stage progression and after removal of the reproductive organs. Leaf gene expression levels and content of major amino acids, both of which decreased during leaf-stage progression, increased after removal of the reproductive organs. In particular, the levels of expression of cytokinin biosynthesis genes and cytokinin-responsive genes and the cytokinin content increased after removal of the reproductive organs. Analysis of plants with knockout of a cytokinin-biosynthetic gene (AtIPT3) and a cytokinin receptor gene (AHK3) indicated that glutamate dehydrogenase genes (GDH3) were regulated by cytokinin signaling. These data suggest that cytokinins regulate communication between reproductive and vegetative organs, and that GDH3 is one target of the cytokinin-mediated regulation of nitrogen metabolism. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Ecological ramifications of the direct foliar uptake of nitrogen

The foliar incorporation of various reactive forms of nitrogen (N) has been identified and studied for nearly 30 years. However, the ecosystem-level ramifications of this uptake pathway have only recently been considered by the scientific community. In this review, I present our current understanding of the foliar uptake process and then discuss why this pathway of N addition to ecosystems should be considered separately from the bulk deposition of N to the soil surface. Direct foliar uptake is a direct addition of N to plant metabolism and could potentially more readily influence plant growth compared to soil-deposited N. Current ecosystem process models do not partition reactive N between foliar and soil entry pathways and the influence of N deposition on ecosystem C sequestration is likely inadequately represented in most models. I also outline several research priorities for the future understanding of the ecological consequences of foliar uptake of reactive N.