Evaluation of the Sensitivity and Specificity of Polymerase Chain Reaction Test Kit,AMPLICOR Chlamydia trachomatis

The sensitivity and specificity of the polymerase chain reaction (PCR) test kit, AMPLICOR Chlamydia trachomatis, were examined by the use of purified elementary bodies (EBs), cells having inclusions containing reticulate bodies alone and 20 clinical isolates. The numbers of EB and inclusion of C. trachomatis at the detection limit were determined to be approximately 2 to 4 EBs and one inclusion per assay, respectively. No reaction occurred for C. psittaci and C. pneumoniae. All clinical isolates were positively reacted in the PCR assay.     

Gustatory sensitivity of the herbivore Tilapia zillii to amino acids

The gustatory sensitivity of the herbivorous fish Tilapia zillii was investigated using electrophysiological techniques. Integrated responses from facial taste nerves were recorded during stimulation by l l amino acids. All compounds proved to be effective stimuli. The relative stimulatory efficacy (RSE) determined at 1 × 10 ⁻³ m indicated that stimuli can be organized into three groups on the basis of similarity of efficacy. Effects of pH which altered the RSE of some amino acids are documented. Amino acid RSE differed to some extent from those of previously studied carnivorous fish. There was concordance between the composition of preferred food, effective feeding stimuli and the peripheral receptor responses. These observations support the hypothesis that peripheral chemosensitivity might serve as a mechanism of feeding specialization in some fish.     

城市可持续规划中的生态敏感区避让分析——以丽江市为例

为促进城市可持续发展,在科学合理规划城市空间格局的基础上,应突出强调保护原有特色生态环境要素,保育生态系统服务功能和原住民人居环境。作为世界文化遗产,丽江城市面貌在过去数十年发生了深刻变化,城市用地显著扩张,同时严峻的环境问题对城市可持续发展提出挑战。以丽江市为例,选取对其发展影响深远的水系元素、噪声环境因子和森林火灾3个关键生态敏感因子,提出通过分析这类生态敏感区在城市规划过程中的避让方法、程度,区划城市规划基本空间格局,以避免城市未来因生态环境问题突出而制约其发展的规划用地思路。结果表明,丽江城区周边湖泊水系、古城内部及周边原住民人口密集区都是保障城市可持续发展的生态保护重点地区,在城市用地规划中必须予以避让;该区域面积为147.2 km2,占研究区面积的11.1%。同时,明确给出了规划用地的具体空间控制范围和相应的避让原则。     

北大西洋大青鲨种群统计分析

大青鲨是金枪鱼延绳钓渔业中最主要的兼捕鱼种,在海洋食物网中属于顶端物种,在海洋生态系统中处于重要地位.由于数据限制,传统的资源评估方法很难准确描述大青鲨的资源动态.本研究基于大青鲨的生活史参数,应用种群统计分析法评估大青鲨的种群参数和资源状态,并探讨了内禀增长率为0时对应的临界捕捞死亡系数F_c与开捕年龄t_c的关系.结果表明： 未开发状态下,大青鲨存活率为0.719～0.820;大青鲨的内在瞬时增长率(r₀)为0.250～0.381,种群倍增时间(t_x2)为1.819～2.773年,种群的净繁殖力(R₀)为6.600～22.255,世代间期时间(G)为8.498～〖JP2〗10.162年,种群资源状态良好.生活史参数的敏感性检验显示,大青鲨初始年龄的自然死亡系数、种群性成熟年龄及寿命的不确定性对种群统计参数的意义影响不大;临界捕捞死亡系数伴随开捕年龄的增大而增大,当t_c≥5时,F_c值与t_c无显著相关关系.     

华北平原参考作物蒸散量时空变化及其影响因素分析

根据华北平原56个气象站1960—2012年逐日气象数据和Penman-Monteith模型计算了各站及区域整体参考作物蒸散量(ET0),利用样条插值法、气候倾向率、累积距平、敏感性系数等方法对华北平原ET0的时空变化及其影响因素进行了分析。结果表明:(1)华北平原多年平均ET0为1071.37mm,空间上呈现高低值相间分布格局,高值中心分布在冀北、鲁中、豫西,而低值中心分布在冀东、鲁南、豫东及豫南等地;(2)近53年ET0呈减少趋势(-12.8mm/10a),山东半岛北部及冀北等地有缓慢增加趋势,其余地区以减少为主;(3)ET0对气温、平均风速、日照时数为正敏感,而对相对湿度为负敏感。平均气温与日照时数敏感系数呈现下降趋势,相对湿度与风速敏感系数表现出上升趋势。ET0对气温和风速敏感度高的区域同时对日照时数和相对湿度敏感度较低;(4)归因分析表明,华北平原ET0的主导因子是日照时数,平均风速次之,相对湿度、最高温度、最低温度对ET0变化影响较小,日照时数主导区域包括冀北、坝上地区、冀中、豫西、豫南、鲁中及鲁西北,平均风速的主导区域为冀南、河南黄河以北、豫中、鲁西北,温度主导区域零星分布于冀北、豫西、山东半岛等地,相对湿度的主导区域主要分布在鲁南、山东半岛。     

Genetic factors in individual radiation sensitivity

Cancer risk and radiation sensitivity are often associated with alterations in DNA repair, cell cycle, or apoptotic pathways. Interindividual variability in mutagen or radiation sensitivity and in cancer susceptibility may also be traced back to polymorphisms of genes affecting e.g. DNA repair capacity. We studied possible associations between 70 polymorphisms of 12 DNA repair genes with basal and initial DNA damage and with repair thereof. We investigated DNA damage induced by ionizing radiation in lymphocytes isolated from 177 young lung cancer patients and 169 cancer-free controls. We also sought replication of our findings in an independent sample of 175 families (in total 798 individuals). DNA damage was assessed by the Olive tail moment (OTM) of the comet assay. DNA repair capacity (DRC) was determined for 10, 30 and, 60 min of repair.Genes involved in the single-strand-repair pathway (SSR; like XRCC1 and MSH2) as well as genes involved in the double-strand-repair pathway (DSR; like RAD50, XRCC4, MRE11 and ATM) were found to be associated with DNA damage. The most significant association was observed for marker rs3213334 (p = 0.005) of XRCC1 with basal DNA damage (B), in both cases and controls. A clear additive effect on the logarithm of OTM was identified for the marker rs1001581 of the same LD-block (p = 0.039): B_CC = −1.06 (95%-CI: −1.16 to −0.96), B_CT = −1.02 (95%-CI: −1.11 to −0.93) and B_TT = −0.85 (95%-CI: −1.01 to −0.68). In both cases and controls, we observed significantly higher DNA basal damage (p = 0.007) for carriers of the genotype AA of marker rs2237060 of RAD50 (involved in DSR). However, this could not be replicated in the sample of families (p = 0.781). An alteration to DRC after 30 min of repair with respect to cases was observed as borderline significant for marker rs611646 of ATM (involved in DSR; p = 0.055), but was the most significant finding in the sample of families (p = 0.009).Our data indicate that gene variation impacts measurably on DNA damage and repair, suggesting at least a partial contribution to radiation sensitivity and lung cancer susceptibility.     

A framework for estimating the sensitivity of eDNA surveys

Imperfect sensitivity, or imperfect detection, is a feature of all survey methods that needs to be accounted for when interpreting survey results. Detection of environmental DNA (eDNA) is increasingly being used to infer species distributions, yet the sensitivity of the technique has not been fully evaluated. Sensitivity, or the probability of detecting target DNA given it is present at a site, will depend on both the survey method and the concentration and dispersion of target DNA molecules at a site. We present a model to estimate target DNA concentration and dispersion at survey sites and to estimate the sensitivity of an eDNA survey method. We fitted this model to data from a species‐specific eDNA survey for Oriental weatherloach, Misgurnus anguillicaudatus, at three sites sampled in both autumn and spring. The concentration of target DNA molecules was similar at all three sites in autumn but much higher at two sites in spring. Our analysis showed the survey method had ≥95% sensitivity at sites where target DNA concentrations were ≥11 molecules per litre. We show how these data can be used to compare sampling schemes that differ in the number of field samples collected per site and number of PCR replicates per sample to achieve ≥95% sensitivity at a given target DNA concentration. These models allow researchers to quantify the sensitivity of eDNA survey methods to optimize the probability of detecting target species, and to compare DNA concentrations spatially and temporarily.     

基于增强回归树与区域增温敏感性指数的城市升温效应空间分异

热岛效应已成为城市化进程中备受关注的城市生态环境问题。有关城市热岛效应的研究对区域在地表升温过程中的空间分异关注尚不足。通过设计区域增温敏感性指数,借助增强回归树（boosted regression tree,BRT）机器学习算法,量化城市不同区域在地表升温过程中的敏感性差异。结果表明：（1）上海市各辖区增温敏感性从高至低依次是：黄浦区、杨浦区、虹口区、静安区、普陀区、徐汇区、长宁区、宝山区、闵行区、浦东新区、嘉定区、奉贤区、松江区、青浦区、金山区、崇明区;（2）区域增温敏感性在不同的温度梯度下具有明显差异,在高温梯度下区域间指数值的差异最大;（3）地表覆被的增温敏感性存在明显的区域分异特性;（4）基于BRT的增温敏感性指数具有较好的指示意义和较高的灵敏度。在城市热环境持续恶化背景下,探讨城市异质空间中地表温度变化的敏感性可为城市热环境调控提供科学依据。     

Autoradiographic Distribution and Characteristics of High- and Low-Affinity Polyamine-Sensitive [3H]Ifenprodil Sites in the Rat Brain: Possible Relationship to NMDAR2B Receptors and Calmodulin

Abstract: We have studied the regional distribution and characteristics of polyamine-sensitive [³H]ifenprodil binding sites by quantitative autoradiography in the rat brain. In forebrain areas ifenprodil displaced [³H]ifenprodil (40 nM) in a biphasic manner with IC₅₀ values ranging from 42 to 352 nM and 401 to 974 µM. In hindbrain regions, including the cerebellum, ifenprodil displacement curves were monophasic with IC₅₀ values in the high micromolar range. Wiping studies using forebrain slices (containing both high- and low-affinity sites) or cerebellar slices (containing only the low-affinity site) showed that high- and low-affinity ifenprodil sites are sensitive to spermine and spermidine, to the aminoglycoside antibiotics neomycin, gentamicin, and kanamycin, and to zinc. Two calmodulin antagonists, W7 and calmidazolium, also displaced [³H]ifenprodil from both sites. Other calmodulin antagonists, including trifluoperazine, prenylamine, and chlorpromazine, selectively displaced [³H]ifenprodil from its low-affinity site in hindbrain and forebrain regions. High-affinity [³H]ifenprodil sites, defined either by ifenprodil displacement curves or by [³H]ifenprodil binding in the presence of 1 mM trifluoperazine, were concentrated in the cortex, hippocampus, striatum, and thalamus with little or no labeling of hindbrain or cerebellar regions. This distribution matches that of NMDAR2B mRNA, supporting data showing that ifenprodil has a preferential action at NMDA receptors containing this subunit. Low-affinity [³H]ifenprodil sites have a more ubiquitous distribution but are especially concentrated in the molecular layer of the cerebellum. [³H]Ifenprodil was found to bind to calmodulin-agarose with very low affinity (IC₅₀ of ifenprodil = 516 µM). This binding was displaced by calmodulin antagonists and by polyamines, with a potency that matched their displacement of [³H]ifenprodil from its low-affinity site in brain sections. However, the localization of the low-affinity [³H]ifenprodil site does not strictly correspond to that of calmodulin, and its identity remains to be further characterized. The restricted localization of high-affinity [³H]ifenprodil binding sites to regions rich in NMDAR2B subunit mRNA may explain the atypical nature of this NMDA antagonist.     

Minimal CK2 activity required for yeast growth

Protein kinase CK2 is essential for the growth of Saccharomyces cerevisiae. Yeast cells that lack the functional genes coding for both the catalytic subunits of protein kinase CK2 can grow only if they are complemented by exogenous cDNAs coding for this subunit. A series of deletion mutants of CK2α from Xenopus laevis was constructed. These mutants that have carboxyl end deletions yield a CK2α product that varies over four orders of magnitude in its capacity to phosphorylate casein in vitro. Complementation of yeast RPG41-1a, a mutant defective in CKA1 and CKA2 genes, with wild-type X. laevis CK2α and with cDNAs coding for truncated CK2α having amino acids 1–328 and 1–327 resulted in cells that grew in gal-minimal media at 30 ^∘C as well as the cells harboring the yeast CKA2 gene. However, the growth was significantly diminished when cells were complemented with X. laevis CK2α containing 1–326 amido acids. This mutant has 0.6% of the catalytic activity of the wild-type enzyme. Yeast cells that expressed CK2α 1–324 and 1–323 which have 10-and 100-fold less activity, respectively, were not able to grow. The growth of cells containing the CK2α 1–326 mutant was very sensitive to temperature, and minimal growth was observed at 37 ^∘C. This mutant was also more sensitive to UV radiation but was not significantly affected by 0.4 M NaCl.Both authors contributed equally to this work