Organellar genomes of the four-toothed moss,Tetraphis pellucida

Background

Mosses are the largest of the three extant clades of gametophyte-dominant land plants and remain poorly studied using comparative genomic methods. Major monophyletic moss lineages are characterised by different types of a spore dehiscence apparatus called the peristome, and the most important unsolved problem in higher-level moss systematics is the branching order of these peristomate clades. Organellar genome sequencing offers the potential to resolve this issue through the provision of both genomic structural characters and a greatly increased quantity of nucleotide substitution characters, as well as to elucidate organellar evolution in mosses. We publish and describe the chloroplast and mitochondrial genomes of Tetraphis pellucida, representative of the most phylogenetically intractable and morphologically isolated peristomate lineage.

Results

Assembly of reads from Illumina SBS and Pacific Biosciences RS sequencing reveals that the Tetraphis chloroplast genome comprises 127,489 bp and the mitochondrial genome 107,730 bp. Although genomic structures are similar to those of the small number of other known moss organellar genomes, the chloroplast lacks the petN gene (in common with Tortula ruralis) and the mitochondrion has only a non-functional pseudogenised remnant of nad7 (uniquely amongst known moss chondromes).

Conclusions

Structural genomic features exist with the potential to be informative for phylogenetic relationships amongst the peristomate moss lineages, and thus organellar genome sequences are urgently required for exemplars from other clades. The unique genomic and morphological features of Tetraphis confirm its importance for resolving one of the major questions in land plant phylogeny and for understanding the evolution of the peristome, a likely key innovation underlying the diversity of mosses. The functional loss of nad7 from the chondrome is now shown to have occurred independently in all three bryophyte clades as well as in the early-diverging tracheophyte Huperzia squarrosa.     

Causes of the large variation in bryophyte species richness and composition among boreal streamside forests

Questions: Boreal forests along small streams are bryophyte diversity hotspots because they are moist, productive and relatively high pH. Do these factors also explain the large differences in species richness and species composition found among streamside sites? Do the species of species‐poor sites represent nested subsets of the species of more species‐rich sites? How do the results apply to conservation? Location: Forests along small streams in mid‐boreal Sweden. Methods: Survey of the flora of liverworts and mosses and habitat properties, including calculation of a pH‐index based on species indicator values, in 37 sites (1000‐m² plots). Results: The number of bryophyte species per plot ranged from 34 to 125. Neither soil moisture nor basal area of trees (a proxy for productivity) correlated significantly with species richness and composition, whereas pH‐index and cover of boulders did. Species richness and composition were more strongly correlated with pH‐index for mosses than for liverworts. The richness and composition of bryophyte species most frequently found on moist ground, stream channel margins and, most unexpected, woody debris were all more strongly associated with the pH‐index than with other habitat properties. Although species composition was significantly nested, there was still some turnover of species along the first ordination axis. Conclusions To attain high numbers of species, streamside forests need to have boulders and at least pockets with higher soil and stream‐water pH. The number of Red list species was weakly correlated with total species richness and the most species‐rich sites contained many species found more in non‐forest habitats. Hence, bryophyte conservation in streamside forests should not focus on species‐rich sites but on the quality and quantity of substrate available for assemblages of forest species that are strongly disfavoured by forestry.     

Species richness, abundance, rarity and environmental gradients in coastal barren vegetation

Coastal barrens in Nova Scotia are heathlands characterised by short, predominantly ericaceous vegetation, sparse tree cover, exposed bedrock, pockets of Sphagnum bog, and stressful climatic conditions. Although coastal barrens are prominent in the physical and cultural landscape, they are largely unprotected. We selected six barrens along the Atlantic coast, and surveyed 20 1-m² plots at each barren for vascular plants, macrolichens, mosses and environmental factors. We recorded 173 species (105 vascular, 41 macrolichen, 27 moss), including six provincially rare vascular species found predominantly in nearshore areas with high levels of substrate salt and nutrients, variable substrate depth, and short vegetation. Although vascular plant and moss richness were similarly correlated with vegetation height, substrate depth, organic matter content, and rock exposure, there were no clear correlations between vascular plant, macrolichen and moss richness across all sites. Vascular plant rarity and species richness were not correlated, but had inverse relationships with key environmental gradients. Tailoring conservation efforts to protect areas of high richness may thus mean that rare species are missed, and vice versa. Ordination and ANOSIM show that barrens vegetation differs widely among sites; therefore, protecting any singular coastal barren will not protect the entire range of vegetation communities and species in this heathland type. Conservation planning should emphasize protecting environmental gradients correlated with richness, rarity and plant community structure, including substrate depth and moisture, and vegetation height. Additionally, protected areas should include a coastal-inland gradient and a diversity of substrate types, including exposed rock and trees.     

缺硫对万寿菊镉积累的影响

采用营养液培养法,研究了缺硫对万寿菊(Tagetes erecta)各器官镉积累的影响,以及巯基化合物和有机酸等在各器官镉积累中的作用.结果表明:0.1 mg·L-1镉处理7 d,缺硫处理显著降低了植物根、茎和叶中的镉含量,较对照分别降低了47%、38%和61%;缺硫对植物体内半胱氨酸、γ-谷氨酰半胱氨酸、谷胱甘肽和有机酸的合成没有显著影响,而且3种巯基化合物的含量都很低;缺硫植物根部合成的植物络合素的量显著降低,这可能是植物体内镉积累减少的主要原因;在植物的各器官中,叶片中的有机酸含量最高,而在叶片中未检测到植物络合素,由此可推断,叶片中积累的镉主要与有机酸结合;缺硫影响了根部植物络合素的合成,进而降低了植物体内镉的积累,而缺硫没有影响植物体内有机酸的合成,有机酸可能仅是参与植物组织中与镉的络合作用.     

上海地区藓类环境生理学特性的初步研究

对22种上海地区藓类植物进行了包括抗旱性、温湿度及光照、生长基质及组织培养等环境生理学方面的研究．结果表明,在同样环境条件下不同种的抗旱表现不同,生长在不同生境下的同一种的表现亦不同;沙壤添加有机质和短光照有利于藓类的生长;适当的激素处理可有效地促进藓类植物的繁殖生长;Hogland培养基适用于藓类植物的组织培养     

Phytogeography of bryophyte and lichen vegetation in the Windmill Islands,Wilkes Land,Continental Antarctica

The distribution and frequency of bryophyte and lichen vegetation on ice-free regions of the Windmill Islands are presented using data derived from aerial photography and ground surveying. The qualitative and quantitative plant cover of sites are listed and related to the topography and major soil characteristics of each site. The richest associations of macrolichens and bryophytes occurred on the metamorphic northern peninsulas. Species richness and frequency was generally reduced on the charnockitic southern peninsula and the islands which have been deglaciated longer. Salinity varied significantly throughout the region with the highest levels in the northern islands reflecting the presence of penguin colonies. In such sites bryophytes and lichens were virtually absent. Wind blown sea-spray contributed far less salts than direct excretion from penguins. On the peninsulas snow cover and site exposure appeared to delimit plant distribution. Higher salt levels from sea-spray on the northern aspects of the peninsulas seemed to have negligible impact on vegetation patterns with the possible exception ofBiatorella cerebriformis which was encountered only inland. The total phosphorus and nitrogen levels of the skeletal soils were generally low except in eutrophic sites adjacent to penguin colonies. The vegetation patterns are discussed in terms of the climate, topography and species autecology.     

Host-specificity of moss-associated fungal communities in the Ny-Ålesund region (Svalbard,High Arctic) as revealed by amplicon pyrosequencing

Fungal communities play a significant role in regulating ecological processes in the Arctic tundra. However, the extent to which the Arctic moss species and host types (moss, lichen and vascular plant) determine the richness, diversity, and composition of fungal communities at a local scale has not been quantitatively explored. Using 454 pyrosequencing in the current study, we characterized the fungal communities associated with six moss species (Andreaea rupestris, Bryum pseudotriquetrum, Hymenoloma crispulum, Polytrichastrum alpinum, Racomitrium lanuginosum, and Sanionia uncinata) and compared them with fungal communities associated with lichens and vascular plants in the Ny-Ålesund region (High Arctic). Host-species preference had greater explanatory power than geographical factors (longitude, latitude, elevation) in shaping moss-associated fungal communities. Fungal communities associated with mosses differed significantly from those associated with vascular plants and lichens, suggesting specificity of the fungal communities among three host types. Pairwise comparison analysis also indicated that the relative abundance of many taxonomic groups (e.g., Chaetothyriales, Leotiales, Catenulifera, Alatospora, and Toxicocladosporium) significantly differed between mosses and the other two host types. These results suggest host factors significantly affect the distribution of the fungal species associated with these moss species in the local-scale Arctic tundra.     

A report on the predominant occurrence of a dermatophyte species in cultivated soil from Kuwait

From several soil samples screened for the occurrence of keratinolytic fungi, soils cultivated with ornamental plants were found to contain strains of the dermatophytic fungusMicrosporum gypseum. One soil sample was dominated by this species.     

Factors determining the centrifugal organization of remnant Festuca grassland communities in Alberta

Abstract. This paper describes the species composition of remnant grasslands in the aspen parkland region of Alberta and its relation to soil characteristics and small‐scale disturbance. Our findings are consistent with the centrifugal model of communities with Festuca hallii dominating undisturbed ‘core’ habitat and the composition of more ‘peripheral’ habitats varying in soil properties and in the magnitude of disturbance. Invasive non‐native species are not present in the core habitat and are present only in the disturbed sites, most abundantly in those with the highest soil nitrogen. The centrifugal model, as it applies to these remnant grasslands, differs from its previous application to wetlands and forests in that the core communities are not on the most fertile sites, but on the least disturbed. These findings have implications for the management of prairie remnants to exclude invasive exotic species.     

Genetic analysis of the effects of re-transformation of transgenic lines of the mossPhyscomitrella patens

Genetic analysis of the progeny of crosses involving strains of the mossPhyscomitrella patens obtained by re-transforming a stable transgenic line, indicates that the plasmid used for re-transformation inserts at or near the chromosomal location of the related plasmid used to obtain the original transgenic line. The resulting structure may be subject to gene silencing.