Binding mode of a cationic porphyrin to parallel and antiparallel thrombin binding aptamer G-quadruplex

Abstract

The spectral properties of meso-tetrakis (N-methylpyridinium-4-yl)porphyrin (TMPyP) in the presence of parallel and antiparallel G-quadruplexes formed from a thrombin-binding aptamer G-quadruplex (5′-G₃T₂G₃TGTG₃T₂G₃) were investigated in this study. Red shift and hypochromism in the Soret absorption band of TMPyP were observed after binding to both parallel and antiparallel G-quadruplexes. The extent of changes in the absorption spectra were similar for both conformers. No circular dichroism spectrum was induced in the Soret region for both parallel and antiparallel G-quadruplexes. This is suggest that there is no or very weak interaction between electric transitions of nucleobases and porphyrin molecule. The accessibility of the neutral quencher I₂ to the G-quadruplex-bound TMPyP was similar for both parallel and antiparallel G-quadruplexes. All these observations suggest that TMPyP was bound at the outside of the quadruplexes, and conceivably interacted with the phosphate group via a weak electrostatic interaction.

Communicated by Ramaswamy H. Sarma     

Controlled Atomic Solubility in Mn‐Rich Composite Material to Achieve Superior Electrochemical Performance for Li‐Ion Batteries

The quest for high energy density and high power density electrode materials for lithium‐ion batteries has been intensified to meet strongly growing demand for powering electric vehicles. Conventional layered oxides such as Co‐rich LiCoO₂ and Ni‐rich Li(Ni_xMn_yCo_z)O₂ that rely on only transition metal redox reaction have been faced with growing constraints due to soaring price on cobalt. Therefore, Mn‐rich electrode materials excluding cobalt would be desirable with respect to available resources and low cost. Here, the strategy of achieving both high energy density and high power density in Mn‐rich electrode materials by controlling the solubility of atoms between phases in a composite is reported. The resulting Mn‐rich material that is composed of defective spinel phase and partially cation‐disordered layered phase can achieve the highest energy density, ≈1100 W h kg^?1 with superior power capability up to 10C rate (3 A g^?1) among other reported Mn‐rich materials. This approach provides new opportunities to design Mn‐rich electrode materials that can achieve high energy density and high power density for Li‐ion batteries.     

Li2O:Li–Mn–O Disordered Rock‐Salt Nanocomposites as Cathode Prelithiation Additives for High‐Energy Density Li‐Ion Batteries

The irreversible loss of lithium from the cathode material during the first cycles of rechargeable Li‐ion batteries notably reduces the overall cell capacity. Here, a new family of sacrificial cathode additives based on Li₂O:Li_2/3Mn_1/3O_5/6 composites synthesized by mechanochemical alloying is reported. These nanocomposites display record (but irreversible) capacities within the Li–Mn–O systems studied, of up to 1157 mAh g^?1, which represents an increase of over 300% of the originally reported capacity in Li_2/3Mn_1/3O_5/6 disordered rock salts. Such a high irreversible capacity is achieved by the reaction between Li₂O and Li_2/3Mn_1/3O_5/6 during the first charge, where electrochemically active Li₂O acts as a Li⁺ donor. A 13% increase of the LiFePO₄ and LiCoO₂ first charge gravimetric capacities is demonstrated by the addition of only 2 wt% of the nanosized composite in the cathode mixture. This result shows the great potential of these newly discovered sacrificial additives to counteract initial losses of Li⁺ ions and improve battery performance.     

Mn(III) meso-tetrakis-(N-ethylpyridinium-2-yl) porphyrin mitigates total body irradiation-induced long-term bone marrow suppression

Our recent studies showed that total body irradiation (TBI) induces long-term bone marrow (BM) suppression in part by induction of hematopoietic stem cell (HSC) senescence through reactive oxygen species (ROS). In this study, we examined if Mn(III) meso-tetrakis-(N-ethylpyridinium-2-yl) porphyrin (MnTE), a superoxide dismutase mimetic and potent antioxidant, can mitigate TBI-induced long-term BM injury in a mouse model. Our results showed that post-TBI treatment with MnTE significantly inhibited the increases in ROS production and DNA damage in HSCs and the reduction in HSC frequency and clonogenic function induced by TBI. In fact, the clonogenic function of HSCs from irradiated mice after MnTE treatment was comparable to that of HSCs from normal controls on a per-HSC basis, suggesting that MnTE treatment inhibited the induction of HSC senescence by TBI. This suggestion is supported by the finding that MnTE treatment also reduced the expression of p16^Ink4a (p16) mRNA in HSCs induced by TBI and improved the long-term and multilineage engraftment of irradiated HSCs after transplantation. Therefore, the results from this study demonstrate that MnTE has the potential to be used as a therapeutic agent to mitigate TBI-induced long-term BM suppression by inhibiting ionizing radiation-induced HSC senescence through the ROS-p16 pathway.     

Glyphosate affects micro-organisms in rhizospheres of glyphosate-resistant soybeans

Aims: Glyphosate‐resistant (GR) soybean production increases each year because of the efficacy of glyphosate for weed management. A new or ‘second’ generation of GR soybean (GR2) is now commercially available for farmers that is being promoted as higher yielding relative to the previous, ‘first generation’ (GR1) cultivars. Recent reports show that glyphosate affects the biology and ecology of rhizosphere micro‐organisms in GR soybean that affect yield. The objective of this research was to evaluate the microbiological interactions in the rhizospheres of GR2 and GR1 soybean and the performance of the cultivars with different rates of glyphosate applied at different growth stages. Methods and Results: A greenhouse study was conducted using GR1 and GR2 soybean cultivars grown in a silt loam soil. Glyphosate was applied at V2, V4 and V6 growth stages at three rates. Plants harvested at R1 growth stage had high root colonization by Fusarium spp.; reduced rhizosphere fluorescent pseudomonads, Mn‐reducing bacteria, and indoleacetic acid–producing rhizobacteria; and reduced shoot and root biomass. Conclusions: Glyphosate applied to GR soybean, regardless of cultivar, negatively impacts the complex interactions of microbial groups, biochemical activity and root growth that can have subsequent detrimental effects on plant growth and productivity. Significance and Impact of the Study: The information presented here will be crucial in developing strategies to overcome the potential detrimental effects of glyphosate in GR cropping systems.     

锰作用下PC12细胞的氧化应激机制研究

目的:以鼠嗜铬神经瘤细胞(PC12)为模型,筛选锰对神经细胞增殖抑制作用的时间及剂量,观察锰作用下PC12细胞的氧化应激反应与细胞形态学、生化指标改变和丝裂原活化蛋白激酶pp38(p38MAPKs)的活化表达。方法:用200,400,600,800μmol/LMnCl2的培养液,分别作用对数生长期PC12细胞1,2,3,4d后,用MTT筛选锰的细胞毒性剂量;测定200-600μmol/L MnCl2作用4d后,PC12细胞还原型谷胱甘肽和丙二醛含量;透射电镜观察细胞形态学变化;琼脂糖凝胶电泳检测MnCl2对PC12细胞基因组DNA的影响。western-blot法检测p-p38。结果:MTT实验显示200~800μmol/LMnCl2作用1,2,3,4d对PC12有显著的抑制作用,呈剂量和时间依赖趋势,600μmol/LMnCl2作用4d对PC12的抑制率可达50%以上。200-600μmol/LMnCl2作用于细胞4d后,随着浓度的升高,还原型GSH逐渐降低,MDA的含量逐渐升高;600μmol/LMnCl2作用4d电镜可见细胞凋亡,同样条件下细胞DNA碎片化。Western-blot实验显示600μmol/LMnCl2作用1,2,3,4dp-p38逐渐升高,3d时较对照组增加6.6倍(n=3,p<0.05),200,400,600μmol/L MnCl2作用4d时,磷酸化蛋白38(p-p38)也逐渐升高,400μmol/L MnCl2作用4d时较对照组升高了4.7倍(n=3,p<0.05)。结论:PC12细胞在锰作用下发生氧化应激反应,上调p-p38,诱导细胞凋亡,细胞增殖抑制。     

A preliminary study of anaerobic thiosulfate‐oxidizing bacteria as denitrifiers in the Arabian Sea

Bacteria which oxidize thiosulfate and reduce nitrate (TONRB) and bacteria which oxidize thiosulfate and denitrify (TODB) sampled at 5‐, 100‐, 200‐ and 300‐m depths were enumerated in agar shake cultures by colony counting and by applying MPN technique, respectively. Lithotrophic denitrification was generally high at the surface but did not vary much with the distance from shore as indicated by the number of TODB. The number of TONRB shows that nitrate‐reduction was much higher at near‐shore stations. The low TODBITONRB ratios at intermediate depths and at 100 m show in particular that the relative abundance of these organisms could be one of the possible reasons for higher nitrite concentrations sometimes reported at these depths. Thiosulfate‐oxidizing and simultaneous nitrate‐reducing abilities of the isolates indicated that the strains isolated from near shore and surface waters were more active nitrate reducers than their counterparts in offshore or deeper waters. The growth yield values of these organisms ranged from 1.1 to 17.9 mg protein mmol^‐1 thiosulfate and from 11.7 to 36.3 mg protein mmol^‐1 sulfide and suggest that they could contribute to chemosynthetic production.     

The effect of ruthenium on the performance of porphyrin dye and porphyrin–fullerene dyad solar cells predicted by DFT and TD-DFT calculations

The effect of ruthenium on the performance of porphyrin dye and porphyrin–fullerene (PF) dyad solar cells is investigated by using density functional theory and time-dependant density functional theory calculations. The results reveal that ruthenium facilitates rapid electron injection from porphyrin to fullerene, narrows the band gaps of porphyrin dye and PF dyad and alters the density of states near the corresponding Fermi levels. The HOMOs are localised on the donor moieties and the LUMOs on the acceptor moieties. The donor and acceptor dyads form good donor–acceptor pairs for photo-to-current conversion under the effect of ruthenium. HOMOs of porphyrin and ruthenium metalloporphyrin dyes fall within the (TiO₂)₆₀ and Ti₃₈O₇₆ gaps, and support the issue of typical interfacial electron transfer reaction. The calculated transition energies of porphyrin are almost insensitive to ethanol solvent effects. The introduction of ruthenium to the porphyrin ring leads to more active nonlinear optical performance, stronger response to the external electric field and induces higher photo-to-current conversion efficiency. Moreover, ruthenium shifts the absorption bands of porphyrin and makes it a potential candidate for harvesting light for photovoltaic applications.     

Cytotoxic effects of Mn(III) N-alkylpyridylporphyrins in the presence of cellular reductant,ascorbate

Abstract

Due to the ability to easily accept and donate electrons Mn(III)N-alkylpyridylporphyrins (MnPs) can dismute O₂ ^·?, reduce peroxynitrite, but also generate reactive species and behave as pro-oxidants if conditions favour such action. Herein two ortho isomers, MnTE-2-PyP⁵⁺, MnTnHex-2-PyP⁵⁺, and a meta isomer MnTnHex-3-PyP⁵⁺, which differ greatly with regard to their metal-centered reduction potential, E_1/2 (Mn^IIIP/Mn^IIP) and lipophilicity, were explored. Employing Mn^IIIP/Mn^IIP redox system for coupling with ascorbate, these MnPs catalyze ascorbate oxidation and thus peroxide production. Consequently, cancer oxidative burden may be enhanced, which in turn would suppress its growth. Cytotoxic effects on Caco-2, Hela, 4T1, HCT116 and SUM149 were studied. When combined with ascorbate, MnPs killed cancer cells via peroxide produced outside of the cell. MnTE-2-PyP⁵⁺ was the most efficacious catalyst for peroxide production, while MnTnHex-3-PyP⁵⁺ is most prone to oxidative degradation with H₂ , and thus the least efficacious. A 4T1 breast cancer mouse study of limited scope and success was conducted. The tumour oxidative stress was enhanced and its microvessel density reduced when mice were treated either with ascorbate or MnP/ascorbate; the trend towards tumour growth suppression was detected.     

Comparative study of the interaction of meso-tetrakis (N-para-trimethyl-anilium) porphyrin (TMAP) in its free base and Fe derivative form with oligo(dA.dT)15 and oligo(dG.dC)15

Interaction between a cationic porphyrin and its ferric derivative with oligo(dA.dT)₁₅ and oligo(dG.dC)₁₅ was studied by UV–vis spectroscopy, resonance light scattering (RLS), and circular dichroism (CD) at different ionic strengths; molecular docking and molecular dynamics simulation were also used for completion. Followings are the observed changes in the spectral properties of meso-tetrakis (N-para-trimethyl-anilium) porphyrin (TMAP), as a free-base porphyrin with no axial ligand, and its Fe derivative (FeTMAP) upon interaction with oligo(dA.dT)₁₅ and oligo(dG.dC)₁₅: (1) the substantial red shift and hypochromicity at the Soret maximum in the UV–vis spectra; (2) the increased RLS intensity by increasing the ionic strength; and (3) an intense bisignate excitonic CD signal. All of them are the reasons for TMAP and FeTMAP binding to oligo(dA.dT)₁₅ and oligo(dG.dC)₁₅ with the outside binding mode, accompanied by the self-stacking of the ligands along the oligonucleotide helix. The CD results demonstrated a drastic change from excitonic in monomeric behavior at higher ionic strengths, which indicates the groove binding of the ligands with oligonucleotides. Molecular docking also confirmed the groove binding mode of the ligands and estimated the binding constants and energies of the interactions. Their interaction trend was further confirmed by molecular dynamics technique and structure parameters obtained from simulation. It showed that TMAP reduced the number of intermolecular hydrogen bonds and increased the solvent accessible surface area in the oligonucleotide. The self-aggregation of ligands at lower concentrations was also confirmed.