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31.
Xiaolin Liao Dan Wang Xiaomu Yu Weitao Li Lei Cheng Jianwei Wang Jingou Tong 《Conservation Genetics》2007,8(4):1003-1007
Rare minnow (Gobiocypris rarus) is an endangered small fish endemic to upper reach of the Yangtze River. From a (GT)n enriched genomic library, 32 microsatellites were isolated and characterized. Nineteen of these loci were polymorphic in
a test population with alleles ranging from 2–7, and observed and expected heterozygosities from zero to 0.8438, and 0.2679
to 0.8264, respectively. In the cross-species amplifications, 13 out of 19 polymorphic loci were found to be also polymorphic
in at least one of the 7 closely related species of the subfamily Gobioninae. These polymorphic microsatellite loci should
provide sufficient level of genetic diversity to evaluate the fine-scale population structure in rare minnow and its closely
related species for the conservation purpose. 相似文献
32.
Kyung-Ho Ma Anupam Dixit Young-Chang Kim Dong-Yun Lee Tae-San Kim Eun-Gi Cho Yong-Jin Park 《Conservation Genetics》2007,8(6):1507-1509
Panax ginseng C.A. Meyer, commonly known as Korean or Asian ginseng, is a perennial herb native to Korea and China. Its roots are highly
prized for several medicinal properties. The present study describes development and characterization of twenty-two polymorphic
microsatellite markers for this species. A total of 99 alleles were detected with an average of 4.5 alleles per locus across
20 accessions. Values for observed (H
O
) and expected (H
E
) heterozygosities ranged from 0.05 to 1.00 and from 0.18 to 0.73, respectively. Eleven loci deviated from Hardy–Weinberg
equilibrium (P < 0.001). Significant (P < 0.05) heterozygote deficiency was observed at 13 loci. Exact test for linkage disequilibrium showed significant values
(P < 0.05) between 12 pairs of loci. These microsatellite markers provide powerful tools for understanding population and conservation
genetics of this species and also for genetic differentiation and authentication of different Panax species being used in commercial ginseng products. 相似文献
33.
Davide Perini Marilena Meloni Kirsten Wolff Giorgio Binelli 《Conservation Genetics》2007,8(5):1263-1266
The hexaploid herbaceous species Primula glaucescens Moretti and Primula spectabilis Tratt. (2n = 6x = 66) are two endemics of the Italian Pre-Alps protected by national and international laws. In order to plan conservation
strategies for natural populations and to study the influence of the latest glaciation on them we developed a set of microsatellites
markers for the endangered Primula species: ten primer pairs allowed analysis of polymorphic disomic loci in P. glaucescens samples and seven of them also amplified polymorphic disomic markers in P. spectabilis.
Kirsten Wolff and Giorgio Binelli contributed equally to the paper 相似文献
34.
Naohisa Kanda Mutsuo Goto Hidehiro Kato Megan V. McPhee Luis A. Pastene 《Conservation Genetics》2007,8(4):853-864
Bryde’s whales (Balaenoptera brydei) differ from other typical baleen whale species because they are restricted to tropical and warm temperate waters in major
oceans, and frequent trans-equatorial movement has been suggested for the species. We tested this hypothesis by analyzing
genetic variation at 17 microsatellite loci (N = 508) and 299 bp of mitochondrial DNA (mtDNA) control region sequences (N = 472) in individuals obtained from the western North Pacific, South Pacific, and eastern Indian Ocean. Combined use of microsatellite
and mtDNA markers allowed us to distinguish between contemporary gene flow and ancestral polymorphism and to describe sex-specific
philopatry. A high level of genetic diversity was found within the samples. Both nuclear and mtDNA markers displayed similar
population structure, indicating a lack of sex-specific philopatry. Spatial structuring was detected using both frequency-based
population parameters and individual-based Bayesian approaches. Whales in the samples from different oceanic regions came
from genetically distinct populations with evidence of limited gene flow. We observed low mtDNA sequence divergence among
populations and a lack of concordance between geographic and phylogenetic position of mtDNA haplotypes, suggesting recent
separation of populations rather than frequent trans-equatorial and inter-oceanic movement. We conclude that current gene
flow between Bryde’s whale populations is low and that effective management actions should treat them as separate entities
to ensure continued existence of the species. 相似文献
35.
Jon-Ivar Westgaard Tekle Tafese Mette Serine Wesmajervi Frank Nilsen Kjersti Turid Fjalestad Børge Damsgård Madjid Delghandi 《Conservation Genetics》2007,8(6):1503-1506
Ten polymorphic microsatellite markers were developed from approximately 1,300 expressed sequence tags (ESTs) of Atlantic
cod (Gadus morhua L.). Thirty two primer pairs were designed for EST sequences containing perfect di- tri- tetra- and pentanucleotide motifs
and characterised in 96 unrelated fish. Ten markers were successfully amplified with number of alleles from 2 to 13 per locus
and observed and expected heterozygosity ranging from 0.03 to 0.69 and 0.03 to 0.74, respectively. Loci Gmo-C131, C132 and C136 deviated from Hardy-Weinberg equilibrium. Genetic linkage disequilibrium analysis between all pairs of
the loci showed significant departure from the null hypothesis between loci Gmo-C131 and Gmo-C132 and C128 and Gmo-C133. The gene identity was determined at five of the loci, confirming the associated microsatellites as Type I markers.
The new microsatellites reported in this work can be used for conservation and enhancement of wild stocks for commercial harvesting.
Jon-Ivar Westgaard and Tekle Tafese have contributed equally to the work. 相似文献
36.
Echinops setifer is an endangered grassland plant species in Japan. We isolated and characterized nine microsatellite loci in this species.
The number of alleles ranged from 3 to 7 and expected heterozygosities from 0.108 to 0.761. These markers described here will
be useful for investigating the genetic diversity, genetic structure and gene flow, and planning for conservation of E. setifer. 相似文献
37.
S. Roques J. A. Galarza E. Macpherson G. F. Turner J. Carreras-Carbonell C. Rico 《Conservation Genetics》2007,8(5):1255-1257
We have developed eight new microsatellite markers for the saddled bream (Oblada melanura) from an enriched genome library protocol. All these loci are polymorphic, with mean allelic diversity of 14.75 (range 3–22),
and expected and observed heterozygosities from 0.233 to 0.918 and 0.212 to 0.913, respectively. Cross-species tests in two
close relatives of the genus Diplodus (D. sargus and D. vulgaris) revealed successful amplifications at 6 out of 8 loci, with means allele number of 6.67 (range 4–10) and 6.50 (range 4–10),
respectively. These results are consistent with the close phylogenetic relationships between the three species, indicating
this set of primers might proved useful for studying the levels of genetic diversity and population differentiation in these
three species and in other phylogenetically close species of the genus Diplodus and Sparus. 相似文献
38.
Kouichi Kawamura Masashi Kubota Miki Furukawa Yasushi Harada 《Conservation Genetics》2007,8(5):1163-1176
The amago salmon, Oncorhynchus masou ishikawae, is an endemic subspecies of O. masou in Japan. Owing to the extensive stocking of hatchery fish throughout Japan, indigenous populations of O. m. ishikawae are now on the verge of extinction. We examined the genetic effects of stocking hatchery fish on wild populations in the
River Koza, Japan, using microsatellite and mitochondrial DNA (mtDNA) markers. For mtDNA, haplotype mt1, which is common in
wild populations, was present exclusively in isolated wild populations assumed to be unaffected by previous stocking, while
it was never observed in hatchery fish. Genetic diversity was much higher in wild populations in the stocked area, which shared
many mtDNA haplotypes with hatchery fish, than in isolated wild populations with haplotype mt1. Pairwise F
ST estimates based on microsatellites showed significant differentiation among the isolated populations with many microsatellite
loci monomorphic. Significant deviation from Hardy–Weinberg equilibrium was observed in wild populations in the area subject
to stocking, where a Bayesian-based assignment test showed a high level of introgression with hatchery fish. These results
suggest that wild populations with haplotype mt1, which became isolated through anthropogenic environmental change in the
1950–1960s, represent indigenous populations of O. m. ishikawae in the River Koza. They have low genetic diversity, most likely caused by genetic bottlenecks following damming and environmental
deterioration, while stocking of hatchery fish over the past 30 years apparently had a large impact on the genetic structure
of wild populations in the main channel of the River Koza. 相似文献
39.
According to classical genetic studies, piebaldism in cattle is largely influenced by the allelic series at the spotting locus (S), which includes the SH (Hereford pattern), S+ (non‐spotted) and s (spotted) alleles. The S locus was mapped on bovine chromosome 6 in the region containing the KIT gene. We investigated the KIT gene, analysing its variability and haplotype distribution in cattle of three breeds (Angus, Hereford and Holstein) with different putative alleles (S+, SH and s respectively) at the S locus. Resequencing of a whole of 0.485 Mb revealed 111 polymorphisms. The global nucleotide diversity was 0.087%. Tajima’s D‐values were negative for all breeds, indicating putative directional selection. Of the 28 inferred haplotypes, only five were observed in the Hereford breed, in which one was the most frequent. Coalescent simulation showed that it is highly unlikely (P < 10E‐6) to obtain this low number of haplotypes conditionally on the observed number of segregating SNPs. Therefore, the neutral model could be rejected for the Hereford breed, suggesting that a selection sweep occurred at the KIT locus. Twelve haplotypes were inferred in Holstein and Angus. For these two breeds, the neutral model could not be rejected. High heterogeneity of the KIT gene was confirmed from a phylogenetic analysis. Our results suggest a role of the KIT gene in determining the SH allele(s) in the Hereford, but no evidence of selective sweep was obtained in Holstein, suggesting that complex mechanisms (or other genes) might be the cause of the spotted phenotype in this breed. 相似文献
40.
Genetic instability has long been hypothesized to be a cardinal feature of cancer. Recent work has strengthened the proposal that mutational alterations conferring instability occur early during tumour formation. The ensuing genetic instability drives tumour progression by generating mutations in oncogenes and tumour-suppressor genes. These mutant genes provide cancer cells with a selective growth advantage, thereby leading to the clonal outgrowth of a tumour. Here, we discuss the role of genetic instability in tumour formation and outline future work necessary to substantiate the genetic instability hypothesis. 相似文献