Characterization of Glycosaminoglycan (GAG) Sulfatases from the Human Gut Symbiont Bacteroides thetaiotaomicron Reveals the First GAG-specific Bacterial Endosulfatase

Despite the importance of the microbiota in human physiology, the molecular bases that govern the interactions between these commensal bacteria and their host remain poorly understood. We recently reported that sulfatases play a key role in the adaptation of a major human commensal bacterium, Bacteroides thetaiotaomicron, to its host (Benjdia, A., Martens, E. C., Gordon, J. I., and Berteau, O. (2011) J. Biol. Chem. 286, 25973–25982). We hypothesized that sulfatases are instrumental for this bacterium, and related Bacteroides species, to metabolize highly sulfated glycans (i.e. mucins and glycosaminoglycans (GAGs)) and to colonize the intestinal mucosal layer. Based on our previous study, we investigated 10 sulfatase genes induced in the presence of host glycans. Biochemical characterization of these potential sulfatases allowed the identification of GAG-specific sulfatases selective for the type of saccharide residue and the attachment position of the sulfate group. Although some GAG-specific bacterial sulfatase activities have been described in the literature, we report here for the first time the identity and the biochemical characterization of four GAG-specific sulfatases. Furthermore, contrary to the current paradigm, we discovered that B. thetaiotaomicron possesses an authentic GAG endosulfatase that is active at the polymer level. This type of sulfatase is the first one to be identified in a bacterium. Our study thus demonstrates that bacteria have evolved more sophisticated and diverse GAG sulfatases than anticipated and establishes how B. thetaiotaomicron, and other major human commensal bacteria, can metabolize and potentially tailor complex host glycans.     

Human DIMT1 generates N26,6A-dimethylation–containing small RNAs

Dimethyladenosine transferase 1 (DIMT1) is an evolutionarily conserved RNA N^6,6-dimethyladenosine (m₂^6,6A) methyltransferase. DIMT1 plays an important role in ribosome biogenesis, and the catalytic activity of DIMT1 is indispensable for cell viability and protein synthesis. A few RNA-modifying enzymes can install the same modification in multiple RNA species. However, whether DIMT1 can work on RNA species other than 18S rRNA is unclear. Here, we describe that DIMT1 generates m₂^6,6A not only in 18S rRNA but also in small RNAs. In addition, m₂^6,6A in small RNAs were significantly decreased in cells expressing catalytically inactive DIMT1 variants (E85A or NLPY variants) compared with cells expressing wildtype DIMT1. Both E85A and NLPY DIMT1 variant cells present decreased protein synthesis and cell viability. Furthermore, we observed that DIMT1 is highly expressed in human cancers, including acute myeloid leukemia. Our data suggest that downregulation of DIMT1 in acute myeloid leukemia cells leads to a decreased m₂^6,6A level in small RNAs. Together, these data suggest that DIMT1 not only installs m₂^6,6A in 18S rRNA but also generates m₂^6,6A-containing small RNAs, both of which potentially contribute to the impact of DIMT1 on cell viability and gene expression.     

New aspects of the cereal storage protein synthesis and degradation including the role of thioredoxin, as well as its regulatory properties

In this review the thioredoxin (TR) contribution to the multiple oxidoreductive processes, such as the transporting of protein in the electron and proton transfer, are presented. Also its cooperation with NADP⁺/NADPH, ferredoxin (Fd), TR-reductase and protein disulfide isomerase (PDI) are discussed. The main aspect of the review concerns the participation of TR system in the final oxidation of cereal storage proteins in grain maturation, as well as in the reduction of those proteins during grain germination, preceding their proteolysis. Therefore the newer information on the structure of cereal storage proteins and some aspects of their biosynthesis, are also presented. During the study concerning the TR system the existence of the mechanisms of its regulatory action are also shown. The regulation of enzymes containing SH groups in the active site, as well as those containing such groups in other regions of the molecule belong to them, the change of oxidation degree (by TR) causes in the latter case the conformation conversion, which regulates the catalysis rate. To this latter group some enzymes of photosynthetic Calvin cycle or the pentose phosphate pathway, could be included. The contribution of TR to those or some other mechanisms is also presented.     

Masochistic Dreams: A Gender-Related Diathesis for Depression Revisited

Masochistic dreams, as defined by Beck (1967), are reportedly more prevalent among women and individuals with past or present depression. However, it is unclear whether these prevalence differences are a function of depressogenic personality traits or fluctuating mood symptoms. In the present study, 30 men and 30 women without histories of major depression slept two consecutive nights in a sleep laboratory and reported their dreams from each REM period on the second night. Dream content from this sample was compared to that of 60 depressed participants who were studied previously under the same protocol. Analyses did not support a heightened prevalence of masochistic dreams among women or depressed individuals. Interestingly, the masochistic dreams of the non-depressed sample were equally distributed across the night, whereas depressed individuals tend to report masochistic dreams closer to morning. This hypothesized pattern suggests that masochistic dreams may be pathognomic of depression in that their occurrence near the end of the night affects morning mood with negative dream residue.     

Food consumption by the larvae of Sericostoma vittatum (Trichoptera), an endemic species from the Iberian Peninsula

The caddisfly Sericostoma vittatum Rambur (Trichoptera: Sericostomatidae) is an endemic species of the Iberian Peninsula. Under laboratory conditions, larvae of S. vittatum had a higher activity and metabolism during the night. Besides consuming particulate allochthonous organic matter, young stages are also able to feed and grow on faecal pellets from adults. Daily growth rates varied from 0.02 mg (0.8–3.7 mg size class animals) to 0.31 mg dry mass (10.6–22.8 mg size class animals). Due to the high densities of this species (annual mean of 25 individuals m^–2; maximum of 96 individuals m^–2) and high consumption rates (0.47 mg leaf dry mass mg animal^–1 d^–1for small larvae), this species has a potential key role on the fragmentation of allochthonous organic matter of streams in central Portugal.     

群体大小对青幼鱼群体特征的影响

为考察群体大小对青幼鱼(Mylopharyngodon piceus)群体特征的影响,在(25±0.5)℃条件下对1、2、4和8尾青幼鱼组成的群体(N=12)进行视频拍摄和轨迹分析,得到游泳速度和空间分布特征数据,实验同时测定了不同群体大小对恐吓刺激的反应差异。结果显示:青幼鱼自发游泳速度多处于0—10 cm/s,不受群体大小的影响,但不同个体速度同步性随群体大小增加而显著下降;青幼鱼最近邻距离多数位于0—10 cm,且随着群体大小增加,最近邻距离和群体排列的极性均随群体数量上升而显著下降;青幼鱼群体中位置分布具有个体差异,且随着群体数量上升差异加剧;青幼鱼对恐吓刺激的反应率不受群体大小的影响,但群体内部不同个体对刺激的反应的一致性随群体大小上升有所下降。结果表明:青幼鱼具备集群性,在2—8个体范围内随群体大小上升凝聚力上升,协调性下降;群体特征的改变对恐吓刺激反应率没有显著影响,但协调性的下降导致反应一致性降低;青幼鱼群体中不同个体在集群活动中可能存在社会分工,且这种分工的作用在大群体大小上升表现更为明显。     

土壤胡敏素研究进展

土壤有机质是土壤的重要组成部分,在土壤肥力和生态环境等方面都具有重要作用.作为土壤有机质主体的腐殖物质的研究,一直受到各国学者的普遍重视.在土壤腐殖物质3组分中,以往的研究主要集中于可溶性的胡敏酸和富里酸,而对不溶性的胡敏素则较少涉及.从分离、结构和作用3个方面,综述了土壤胡敏素的研究现状和最新进展,并对今后的研究方向进行了展望,以促进胡敏素研究的继续深入开展.提出近期的研究重点主要包括:(1)比较不同分离方法获得的土壤胡敏素的差异,以达到方法上的可比性和统一性,同时提出更适宜的分离方法;(2)通过多种分析测试手段的相互补充验证,以获得对土壤胡敏素结构本质更加明确、清晰和深入的认识;(3)加强土壤胡敏素肥力和环境作用的研究,尤其应重视从分子水平上探明其构效关系,为生产实践和应用提供理论依据.     

Within species support for the expensive tissue hypothesis: a negative association between brain size and visceral fat storage in females of the Pacific seaweed pipefish

The brain is one of the most energetically expensive organs in the vertebrate body. Consequently, the high cost of brain development and maintenance is predicted to constrain adaptive brain size evolution (the expensive tissue hypothesis, ETH). Here, we test the ETH in a teleost fish with predominant female mating competition (reversed sex roles) and male pregnancy, the pacific seaweed pipefish Syngnathus schlegeli. The relative size of the brain and other energetically expensive organs (kidney, liver, heart, gut, visceral fat, and ovary/testis) was compared among three groups: pregnant males, nonpregnant males and egg producing females. Brood size in pregnant males was unrelated to brain size or the size of any other organ, whereas positive relationships were found between ovary size, kidney size, and liver size in females. Moreover, we found that the size of energetically expensive organs (brain, heart, gut, kidney, and liver) as well as the amount of visceral fat did not differ between pregnant and nonpregnant males. However, we found marked differences in relative size of the expensive organs between sexes. Females had larger liver and kidney than males, whereas males stored more visceral fat than females. Furthermore, in females we found a negative correlation between brain size and the amount of visceral fat, whereas in males, a positive trend between brain size and both liver and heart size was found. These results suggest that, while the majority of variation in the size of various expensive organs in this species likely reflects that individuals in good condition can afford to allocate resources to several organs, the cost of the expensive brain was visible in the visceral fat content of females, possibly due to the high costs associated with female egg production.     

钙调蛋白在植物发育中的功能

钙调蛋白(CaM)在植物生长和发育中有着多种功能,它参与了一系列的发育过程如细胞分裂、细胞代谢、胁迫、花药和雌蕊以及胚胎的发育等．对钙调蛋白功能的了解将有助于更深入研究钙/钙调蛋白介导的信号网络,为研究植物体内各类代谢的信号转导奠定基础．     

磷缓解水鳖镉毒害的生理研究

研究了Cd对水鳖生理生化过程的影响及Pi对Cd胁迫的缓解作用。结果显示,Cd能抑制水鳖的代谢和生长,使叶绿素含量与光合速率下降,呼吸速率与可溶性糖含量增加,POD活性增强;当加入0.6mmol/L Pi后,能相对减轻Cd造成的毒害,表现出Pi对Cd的拮抗和缓解作用。