Microbial tropicalization driven by a strengthening western ocean boundary current

Western boundary currents (WBCs) redistribute heat and oligotrophic seawater from the tropics to temperate latitudes, with several displaying substantial climate change‐driven intensification over the last century. Strengthening WBCs have been implicated in the poleward range expansion of marine macroflora and fauna, however, the impacts on the structure and function of temperate microbial communities are largely unknown. Here we show that the major subtropical WBC of the South Pacific Ocean, the East Australian Current (EAC), transports microbial assemblages that maintain tropical and oligotrophic (k‐strategist) signatures, to seasonally displace more copiotrophic (r‐strategist) temperate microbial populations within temperate latitudes of the Tasman Sea. We identified specific characteristics of EAC microbial assemblages compared with non‐EAC assemblages, including strain transitions within the SAR11 clade, enrichment of Prochlorococcus, predicted smaller genome sizes and shifts in the importance of several functional genes, including those associated with cyanobacterial photosynthesis, secondary metabolism and fatty acid and lipid transport. At a temperate time‐series site in the Tasman Sea, we observed significant reductions in standing stocks of total carbon and chlorophyll a, and a shift towards smaller phytoplankton and carnivorous copepods, associated with the seasonal impact of the EAC microbial assemblage. In light of the substantial shifts in microbial assemblage structure and function associated with the EAC, we conclude that climate‐driven expansions of WBCs will expand the range of tropical oligotrophic microbes, and potentially profoundly impact the trophic status of temperate waters.     

An interactive method to select a set of sustainable urban development indicators

The paper proposes a method for selecting a set of sustainable development indicators which can be used for various sustainability-related tasks, such as assessment of current condition, measure of progress toward specific goals of sustainable development, in general, and sustainable urban development, in particular. The method is based on variable clustering, selecting cluster representative, and multivariate linear regression in combination with experts and stakeholders’ input in an interactive process. The small set of indicators derived from the proposed method was able to account for a significant amount of information from the initial indicator set while effectively assisting stakeholders in making informed decision based on objective quantitative information and meeting their preference simultaneously.     

广东从化地区不同生境食蚊鱼种群的繁殖生物学特征

本文从繁殖群体的环境条件、形体特征、卵巢发育与繁殖力方面对广东从化地区溪流、池塘、农田3种不同生境的食蚊鱼(Gambusia affinis)种群展开比较研究。结果发现,无论流动水体溪流还是静水水体池塘和农田,食蚊鱼的繁殖期均在3~12月份,繁殖群体中雌鱼占比明显高于雄鱼(Chi-Square test,P0.01)。雌鱼周年平均体长及体重,池塘生境的显著大于农田和溪流生境。农田生境中雌鱼的个体怀卵量(24.1±12.1)粒,体重相对繁殖力(57.5±31.0)粒/g,二者均明显高于溪流生境[(16.6±11.6)粒,(40.8±15.5)粒/g]与池塘生境[(18.9±16.3)粒,(35.7±19.1)粒/g],但农田生境雌鱼成熟卵子的卵径显著小于溪流和池塘生境。结果表明,在环境稳定的池塘生境中,食蚊鱼的繁殖策略偏向k-对策特性;在人为干扰较大的农田生境中,食蚊鱼的繁殖策略偏向r-对策特性。不同类型生境中食蚊鱼的繁殖特性存在一定差异,主要与其栖息环境的稳定性和饵料生物的丰富度有关。     

慢性乙型肝炎患者肠道菌群与肝脏生化指标的相关性

乙型肝炎病毒感染引起的慢性乙型肝炎(Chronic hepatitis B,CHB)是一种全球性流行疾病,严重时可引起肝功能衰竭,甚至发展成肝硬化和肝癌.也已发现CHB的发生和发展与肠道菌群的组成和结构的变化密切相关.为进一步探究肠道菌群结构与肝脏生化指标之间的联系,文中随机纳入14名CHB患者和11名健康对照者(Co...     

Predictors of Species Sensitivity to Fragmentation

We reviewed empirical data and hypotheses derived from demographic, optimal foraging, life-history, community, and biogeographic theory for predicting the sensitivity of species to habitat fragmentation. We found 12 traits or trait groups that have been suggested as predictors of species sensitivity: population size; population fluctuation and storage effect; dispersal power; reproductive potential; annual survival; sociality; body size; trophic position; ecological specialisation, microhabitat and matrix use; disturbance and competition sensitive traits; rarity; and biogeographic position. For each trait we discuss the theoretical justification for its sensitivity to fragmentation and empirical evidence for and against the suitability of the trait as a predictor of fragmentation sensitivity. Where relevant, we also discuss experimental design problems for testing the underlying hypotheses. There is good empirical support for 6 of the 12 traits as sensitivity predictors: population size; population fluctuation and storage effects; traits associated with competitive ability and disturbance sensitivity in plants; microhabitat specialisation and matrix use; rarity in the form of low abundance within a habitat; and relative biogeographic position. Few clear patterns emerge for the remaining traits from empirical studies if examined in isolation. Consequently, interactions of species traits and environmental conditions must be considered if we want to be able to predict species sensitivity to fragmentation. We develop a classification of fragmentation sensitivity based on specific trait combinations and discuss the implications of the results for ecological theory.     

Does governance play a role in the distribution of invasive alien species?

Invasive alien species (IAS) constitute a major threat to global biological diversity. In order to control their spread, a detailed understanding of the factors influencing their distribution is essential. Although international trade is regarded as a major force structuring spatial patterns of IAS, the role of other social factors remains unclear. Despite studies highlighting the importance of strong governance in slowing drivers of biodiversity loss such as logging, deforestation, and agricultural intensification, no study has yet analyzed its contribution to the issue of IAS. Using estimates of governance quality and comprehensive spatiotemporal IAS data, we performed multiple linear regressions to investigate the effect of governance quality upon the distribution of species listed under “100 of the worst” IAS in 38 Eurasian countries as defined by DASIE. Our model suggested that for countries with higher GDP, stronger governance was associated with a greater number of the worst IAS; in contrast, for the lowest GDP countries under analysis, stronger governance was associated with fewer of these IAS. We elucidate how the quality of governance within a country has implications for trade, tourism, transport, legislation, and economic development, all of which influence the spread of IAS. While our findings support the common assumption that strengthening governance benefits conservation interventions in countries of smaller economy, we find that this effect is not universal. Stronger governance alone cannot adequately address the problem of IAS, and targeted action is required in relatively high‐GDP countries in order to stem the influx of IAS associated with high volumes of trade.     

Characterisation of aerobically grown non-spore-forming bacteria from paper mill pulps containing recycled fibres

A total of 179 non-spore-forming bacteria aerobically growing on Nutrient Agar, Plate Count Agar or in specific enrichment conditions for salmonella, campylobacteria, listeria, yersinia or staphylococci, were isolated from 16 untreated paper mill pulps. After phenotypical screening the isolates were characterised by automated ribotyping and partial sequencing of the 16S rRNA gene. They could be divided into seven taxonomical classes representing 63 taxa (species): actinobacteria (11 species), bacilli (7), flavobacteria (3) alphaproteobacteria (10), betaproteobacteria (5), gammaproteobacteria (25) and sphingobacteria (2). Most of the gammaproteobacteria were enterobacteria, mainly species of the genera Enterobacter (7 species, 7 samples/3 mills) and Klebsiella (5 species, 6 samples/3 mills). Other commonly occurring bacteria were most closely related to Microbacterium barkeri (7 samples/3 mills), Cloacibacterium normanense (6 samples/2 mills), Pseudoxanthomonas taiwanensis (5 samples/2 mills) and Sphingobacterium composti (5 samples/1 mill). Sporadic isolates of Listeria innocua, L. monocytogenes, Enterococcus casseliflavus and Staphylococcus warneri were detected, from which only L. monocytogenes is considered to be a food pathogen. No isolates of the genera Campylobacter, Salmonella or Yersinia were detected. The detected bacteria may be harmful in process control, but the load of food pathogens with recycled fibres to paper machines is insignificant. Faecal contamination of the pulp samples was not indicated.     

Chemical and biological indicators of soil quality in organic and conventional farming systems in Central Italy

In the past decade, there has been increased scientific interest in the so-called organic farming, especially in comparison with conventional agriculture. Many recent studies compare these two fundamentally different systems for soil properties, in different regions of the world. In this study, two adjacent fields in Central Italy, one managed according to organic, and the other according to conventional farming methods, were studied to determine the effects of these two agricultural systems on soil quality indicators at the farm level. Chemical and microbiological properties were chosen as indicators of soil quality and were measured at soil depth intervals of 5–20 and 20–35 cm, after 7 years of organic certified and conventional management methods. The field under organic management showed significantly better soil nutritional and microbiological conditions; with increased level of total nitrogen, nitrate and available phosphorus, and an increased microbial biomass content, and enzymatic activities (acid phosphatase, protease and dehydrogenase). No consistent increase in total organic carbon was observed. Results of the study suggest that, over the period of 7 year, organic management method strongly affects soil quality indicators. Large differences between the two soils were found in terms of microbiological properties, which are sensitive soil indicators of changes occurred under the different farming systems.     

Effects of Restoration on Plant Species Richness and Composition in Scandinavian Semi-Natural Grasslands

Plant species richness in rural landscapes of northern Europe has been positively influenced by traditional management for millennia. Owing to abandonment of these practices, the number of species‐rich semi‐natural grasslands has decreased, and remaining habitats suffer from deterioration, fragmentation, and plant species decline. To prevent further extinctions, restoration efforts have increased during the last decades, by reintroducing grazing in former semi‐natural grasslands. To assess the ecological factors that might influence the outcome of such restorations, we made a survey of semi‐natural grasslands in Sweden that have been restored during the last decade. We investigated how plant species richness, species density, species composition, and abundance of 10 species that are indicators of grazing are affected by (1) the size of the restored site, (2) the time between abandonment of grazing and restoration, (3) the time elapsed since restoration, and (4) the abundance of trees and shrubs at the restored site. Only two factors, abundance of trees and shrubs and time since restoration, were positively associated with total species richness and species density per meter square at restored sites. Variation in species composition among restored sites was not related to any of the investigated factors. Species composition was relatively similar among sites, except in mesic/wet grasslands. The investigated factors had small effects on the abundance of the grazing‐indicator species. Only Campanula rotundifolia responded to restoration with increasing abundance and may thus be a suitable indicator of improved habitat quality. In conclusion, positive effects on species richness may appear relatively soon after restoration, but rare, short‐lived species are still absent. Therefore, remnant populations in surrounding areas may be important in fully recreating former species richness and composition.