A survey of black dot and other fungal tuber blemishing diseases in British potato crops at harvest

Black dot and other fungal blemishing diseases were assessed on tubers from crops in eastern England in 1987 and 1988, and in 1989 and 1990 from crops throughout Great Britain. Black dot was found on tubers in crops from all areas of the country, and was most common in those from eastern and southern England. The disease was scarce on most Scottish crops, but occasionally some were severely affected. In 1988 there was no consistent relationship between the amounts of disease on the seed and subsequent ware crop. On average, the disease was more prevalent in irrigated crops and where the interval between successive potato crops was short. In 1990 treating seed tubers with fungicide had no effect on subsequent levels of disease. Few crops were unaffected by silver scurf, and it was most common in crops from southern and eastern England. In the national survey common scab was the most prevalent disease, black scurf was less common and skin spot and powdery scab uncommon except in some Scottish crops.     

Stability of microbial communities in goat milk during a lactation year: molecular approaches

The microbial communities in milks from one herd were evaluated during 1-year of lactation, using molecular methods to evaluate their stability and the effect of breeding conditions on their composition. The diversity of microbial communities was measured using two approaches: molecular identification by 16S and 18S rDNA sequencing of isolates from counting media (two milks), and direct identification using 16S rDNA from clone libraries (six milks). The stability of these communities was evaluated by counting on selective media and by Single Strand Conformation Polymorphism (SSCP) analysis of variable region V3 of the 16S rRNA gene and variable region V4 of the 18S rRNA gene. One hundred and eighteen milk samples taken throughout the year were analyzed. Wide diversity among bacteria and yeasts in the milk was revealed. In addition to species commonly encountered in milk, such as Lactococcus lactis, Lactococcus garvieae, Enterococcus faecalis, Lactobacillus casei, Leuconostoc mesenteroides, Staphylococcus epidermidis, Staphylococcus simulans, Staphylococcus caprae, Staphylococcus equorum, Micrococcus sp., Kocuria sp., Pantoea agglomerans and Pseudomonas putida, sequences were affiliated to other species only described in cheeses, such as Corynebacterium variabile, Arthrobacter sp., Brachybacterium paraconglomeratum, Clostridium sp. and Rothia sp. Several halophilic species atypical in milk were found, belonging to Jeotgalicoccus psychrophilus, Salinicoccus sp., Dietza maris, Exiguobacterium, Ornithinicoccus sp. and Hahella chejuensis. The yeast community was composed of Debaryomyces hansenii, Kluyveromyces lactis, Trichosporon beigelii, Rhodotorula glutinis, Rhodotorula minuta, Candida pararugosa, Candida intermedia, Candida inconspicua, Cryptococcus curvatus and Cryptococcus magnus. The analyses of microbial counts and microbial SSCP profiles both distinguished four groups of milks corresponding to four periods defined by season and feeding regime. The microbial community was stable within each period. Milks from winter were characterized by Lactococcus and Pseudomonas, those from summer by P. agglomerans and Klebsiella and those from autumn by Chryseobacterium indologenes, Acinetobacter baumanii, Staphylococcus, Corynebacteria and yeasts. However, the composition of the community can vary according to factors other than feeding. This study opens new investigation fields in the field of raw milk microbial ecology.     

Biochemical indication of microbial mass changes using ATP and DNA measurement in biological treatment of thiocyanate

This study was designed to monitor changes in the levels of adenosine 5'-triphosphate (ATP) and deoxyribonucleic acid (DNA) per unit of microbial mass during the autotrophic biodegradation of thiocyanate (SCN(-)). An artificial medium containing trace minerals and 500 mg SCN(-)/L was used as a substrate for bacterial growth. An SCN(-)-degrading bioreactor with a working volume of 6 L, equipped with temperature, pH, and dissolved oxygen controls, was operated in batch mode. During the exponential phase of SCN(-) biodegradation, the ratios of ATP and DNA to microbial dry weight varied from 0.6 to 1.1 mug ATP/mg of volatile suspended solid (VSS), and from 3.5 to 8.8 mug DNA/mg of VSS, respectively. The ATP and DNA concentrations correlated linearly with microbial mass (r (2) > 0.9) within the exponential phase. The linear regression equations were as follows: (1) microbial mass concentration (mg/L) = 0.663 x ATP concentration (mug/L) + 11.1 and (2) microbial concentration (mg/L) = 0.081 x DNA concentration (mug/L) + 10.9. The applicable ranges were 6.8 to 47.4 mug/L for ATP concentration and 41.5 to 395 mug/L for DNA concentration, respectively.     

John Salter and the Ediacara Fauna of the Longmyndian Supergroup

John W. Salter's papers of 1856 and 1857 reported trace and body fossils from rocks of the Longmyndian Supergroup, Shropshire, that conventional wisdom had deemed literally “Azoic.” The significance of this work is reflected by its mention in On the Origin of Species, where it is cited as evidence for the existence of life prior to the Cambrian radiation. This study of Salter's historic specimens combined with recent field studies confirms that these structures likely represent microbial rather than metazoan markings. Nevertheless, this review confirms Salter as the unheralded founder of Precambrian palaeontology, many years before the existence of a Precambrian fossil record was widely known. This study also gives credit to a highly skilled palaeontologist, who appears to have struggled with psychological problems throughout his life. Salter had once been Adam Sedgwick's “youthful and cheerful companion” in the field, prior to embarking on an initially successful Geological Survey career. He was a widely renowned expert on Palaeozoic palaeontology, especially trilobites, but eventually fell into serious depression, which culminated in his suicide in 1869. Study and reinterpretation of his original materials reaffirms the importance of Salter's discoveries, and the Longmynd for our understanding of late Ediacaran palaeobiology.     

A test of the mechanisms behind avian generalized individuals–area relationships

Aim Questions related to abundances of organisms are central to ecological research. A priori, a scale independent estimation of abundances would be expected. However, we find estimates of numbers of bird individuals from all over the world to increase less than proportionately with increasing plot size. At the whole assemblage level, the pattern holds across biogeographical regions and habitats. The slope of the interspecific and, for the majority of species, the intraspecific individuals–area relationship is also significantly shallower than 1. The question arises as to which mechanisms cause these patterns. Location Global. Methods At the assemblage, interspecific and intraspecific levels, we tested three mechanisms that could be responsible for these patterns by comparing the slope of the individuals–plot area relationship for subsets of a database compiled from the literature. Spatial autocorrelation was controlled for. Results There was no evidence for an influence of plot area choice in order to sample a constant number of individuals. Evidence for higher survey efficiency was available only with increasing number of visits at the intraspecific level. Evidence for influences of habitat heterogeneity was present at the assemblage, interspecific and intraspecific levels. This mechanism can work only if small plots are delimited non‐randomly in homogeneous habitat. Main conclusions Avian population size estimates without indication of the area over which they were obtained are of substantially less value than those coupled with that information. Ecologists planning to compare avian abundances between plots varying in some other factor of interest should minimize variations in their areas and/or account for them in data analyses. Population viability analyses, regional and global population size estimates, site prioritization and the scaling of ecosystem and species energy utilization need to address the plot area effect on assemblage and individual species abundances.     

Effects of Dietary Non-Digestible Oligosaccharides on Microbial Characteristics of Ileal Chyme and Faeces in Weaner Pigs

Fructooligosaccharides (FOS) and transgalactooligosaccharides (TOS), which are non-digestible oligosaccharides (NDO), were included at 10 and 40g/kg in an NDO-free control diet at the expense of purified cellulose. Each of the 5 diets was fed to 4 weaner pigs and microbial characteristics of their ileal chyme and faeces were assessed. The NDO-pigs had lower ileal pH than the control pigs. Dietary NDO did not affect the ileal volatile fatty acid concentration, though FOS-pigs had a higher concentration of lactic acid and relatively more iso-valeric acid and less acetic acid than TOS-pigs. The NDO-pigs had lower ileal aerobic bacterial counts than the control pigs, whilst the FOS-pigs had a larger ileal anaerobic bacterial counts than the TOS-pigs. The NDO-pigs had an higher faecal pH and their faecal volatile fatty acid pool contained relatively more iso-butyric acid and iso-valeric acid than the control pigs. The TOS-pigs tended to have higher faecal anaerobic bacterial counts and had a smaller concentration of faecal volatile fatty acid than the FOS-pigs. We concluded that whilst effects at the faecal level may have been partly due to a reduced intake of cellulose, dietary NDO can exert precaecal prebiotic effects in weaner pigs.     

Polysaccharases for microbial exopolysaccharides

Microbial exopolysaccharides (EPS) are the substrates for a wide range of enzymes most of which are highly specific. The enzymes are either endoglycanases or polysaccharide lyases and their specificity is determined by carbohydrate structure with uronic acids often playing a major role. The presence of various acyl substituents frequently has little effect on the action of many of the polysaccharases but markedly inhibits some of the polysaccharide lyases including alginate and gellan lyases. The commonest sources of such enzymes can be either microorganisms or bacteriophages. These specific polysaccharide-degrading enzymes can yield oligosaccharide fragments, which are amenable to NMR and other analytical techniques. They have thus proved to be extremely useful in providing information about microbial polysaccharide structures and were routinely used in many such studies. Complex systems containing various mixtures of enzymes may also be effective in the absence of single enzymes but may be difficult to obtain with reproducible activities. Such preparations may also cause extensive degradation of the polysaccharide structure and thus prove less useful in providing information. Commercially available enzyme preparations have seldom proved capable of degrading microbial heteropolysaccharides, although some are active against bacterial alginates and homopolysaccharides including bacterial cellulose and curdlan.     

模型动物中的肠道菌群分析及微生物组研究

正肠道菌群与多种疾病密切相关,从消化道疾病(如炎症性肠病)、心脑血管疾病(如动脉粥样硬化)到代谢类疾病(如II型糖尿病)和许多免疫性疾病(如风湿性关节炎),肠道菌群研究为诸多疾病研究和防治开辟了新的方向[1-3]。在肠道菌群研究领域,模型动物应用和实验结果的动物实验验证非常重要,本刊2016年第7期刊登的姬玉娇、孔祥峰等的论文"高、低营养水平饲粮对环江香猪结肠菌群结构及代谢物的影响"[4],通过对高、     

Perception of livestock ecosystem services in grazing areas

This study investigates how the ecosystem services (ES) linked to livestock grazing are perceived across countries. A total of 82 case studies collected from 42 countries via survey (53.7% cases from Europe and 46.3% from outside of Europe) have been analysed through a multivariate approach. In all, 18 non-provisioning ES were considered. Overall, the reported impacts of livestock grazing on the different ES were much more positive than negative. Notably, a large proportion of respondents reported either positive or very positive impacts for some cultural ES, namely cultural, historic and natural heritage (84%), knowledge systems and educational values (77%), landscape values (74%), and for some supporting and regulating ES, namely habitat provision (66%), nutrient cycling (65%), and bush encroachment/fire control (66%). Based on multiple regression analysis, geographic origin, stakeholder type and species category, as well as protection status of the grazing area, had significant effects on the perception of the impacts. Respondents reported those impacts as more positive in Europe, in protected areas and where several species were present in the grazing area. A significantly larger proportion of respondents reported recognition of ES provided by the grazing livestock population in European countries (40.9%) compared with non-European countries (23.7%). Based on the survey responses it appears that in non-European countries absence of formal recognition, especially by policy makers, is a major challenge for the continued provision of ES in grazing systems. In Europe, where such recognition is already often included in legislation, the long-term sustainability of related policies and incentives to provide such services is viewed as a major issue by the respondents.     

Is racism the new sectarianism? Negativity towards immigrants and ethnic minorities in Northern Ireland from 2004 to 2015

Negativity towards ethnic minorities is a serious problem in Northern Ireland. Its history of the Troubles around religious identities makes Northern Ireland a special case in Europe. This paper examines negativity towards Muslims, Eastern Europeans and immigrants in Northern Ireland using data from the Northern Ireland Life and Times Survey and the British Social Attitudes Survey. The results from regressions show that anti-immigrant negativity is no more prevalent in Northern Ireland than elsewhere in the UK. However, levels of negativity towards Muslims and Eastern Europeans are significantly higher than in Great Britain and have increased in recent years, particularly among young adults aged 18–24 years, although older cohorts are more intolerant on average. Our regression analyses found strong positive relationships between anti-immigrant negativity, sectarianism and perceived neighbourhood segregation. Higher education, contacts with minority members and (religiously) mixed schooling are negatively related to negativity towards immigrants.