High-throughput enzyme screening platform for the IPP-bypass mevalonate pathway for isopentenol production

Isopentenol (or isoprenol, 3-methyl-3-buten-1-ol) is a drop-in biofuel and a precursor for commodity chemicals such as isoprene. Biological production of isopentenol via the mevalonate pathway has been optimized extensively in Escherichia coli, yielding 70% of its theoretical maximum. However, high ATP requirements and isopentenyl diphosphate (IPP) toxicity pose immediate challenges for engineering bacterial strains to overproduce commodities utilizing IPP as an intermediate. To overcome these limitations, we developed an “IPP-bypass” isopentenol pathway using the promiscuous activity of a mevalonate diphosphate decarboxylase (PMD) and demonstrated improved performance under aeration-limited conditions. However, relatively low activity of PMD toward the non-native substrate (mevalonate monophosphate, MVAP) was shown to limit flux through this new pathway. By inhibiting all IPP production from the endogenous non-mevalonate pathway, we developed a high-throughput screening platform that correlated promiscuous PMD activity toward MVAP with cellular growth. Successful identification of mutants that altered PMD activity demonstrated the sensitivity and specificity of the screening platform. Strains with evolved PMD mutants and the novel IPP-bypass pathway increased titers up to 2.4-fold. Further enzymatic characterization of the evolved PMD variants suggested that higher isopentenol titers could be achieved either by altering residues directly interacting with substrate and cofactor or by altering residues on nearby α-helices. These altered residues could facilitate the production of isopentenol by tuning either k_cat or K_i of PMD for the non-native substrate. The synergistic modification made on PMD for the IPP-bypass mevalonate pathway is expected to significantly facilitate the industrial scale production of isopentenol.     

Quantitative proteomic profiling identifies global protein network dynamics in murine embryonic heart development

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The rate of development of water deficits affects Saxifraga cernua leaf respiration

We allowed plant water deficits to develop at two different rates following the cessation of watering in order to investigate the effects of water stress on cytochrome pathway and alternative pathway respiration in the leaves of the arctic herb Saxifraga cernua. Plants were pretreated by growth in either a commercial organic (CO) mixture or a vermiculite-perlite (VP) mixture, which allowed the complete development of water deficits in 19 and 8 days, respectively. The rate of water potential reduction was approximately 0.11 MPa day⁻¹ in the leaves of CO plants, compared to a reduction of 0.21 MPa day⁻¹ in leaves of VP plants. Osmotic adjustment occurred to a greater extent in leaves of CO plants and corresponded with an increase in ethanol-soluble sugars. In leaves of CO plants, cytochrome pathway activity gradually declined from that of control rates until day 11, and then declined more rapidly. In contrast, cytochrome pathway activity significantly increased in response to water deficits in leaves of VP plants. In leaves of both CO and VP plants, alternative pathway activity declined as water stress progressed. Relatively severe water deficits reduced alternative pathway capacity in leaves of both CO and VP plants. We also investigated the effect of previous exposure to water deficits on leaf respiration. In plants that had previously experienced three cycles of water stress, the increase in cytochrome pathway activity during the fourth water stress cycle was small compared to the increase observed in leaves of plants experiencing water stress for the first time. These results suggest that cytochrome pathway activity is differentially sensitive to the rate of development of plant water deficits and that respiratory responses to acute water stress are not necessarily similar to the responses to chronic water stress.     

Cloning and Functional Analysis of an Allene Oxide Synthase in Physcomitrella patens

Jasmonic acid (JA) is a plant hormone that plays important roles in a large number of processes in stress adaptation and development in flowering plants. A search of genome database indicated the existence of allene oxide synthase (AOS), an enzyme of JA biosynthesis, in Physcomitrella patens, a model plant among mosses. In this study, the presence of JA was detected in P. patens. The recombinant AOS of P. patens, which was overexpressed in Escherichia coli, showed AOS activity. These data suggest that the octadecanoid pathway also exists in P. patens.