A parallel study of different array-CGH platforms in a set of Spanish patients with developmental delay and intellectual disability

Developmental delay and intellectual disability, which occur in 1–3% of the population, account for a large number of the cases regularly seen in genetic units. Chromosomal microarray analysis has been shown to be a valuable clinical diagnostic assay and it should be the first-tier clinical diagnostic test for individuals with these conditions. However and due to several difficulties such as the platform resolution, the cost, and the inexperience with genomic data bases, the implementation of this test in many cytogenetic laboratories has been delayed. In an attempt to provide more insights of the benefits derived by using the chromosomal microarray analysis, this study presents the experience of two clinical centers using three different microarray platforms. The results obtained using a custom microarray (KaryoArray®) and two different commercial medium- and high-resolution whole-genome oligonucleotide microarrays have been compared. An overall diagnostic yield of around 15% has been obtained. However, the custom microarray platform has been shown to be more convenient for a clinical setting, since it allows the detection of more pathogenic copy number variants and less common variants.     

A Tight-binding Molecular Dynamics Study of the Dissociation of Boron Clusters in c-Si

Boron clusters with silicon self-interstitials have been implicated in the phenomenon of transient enhanced diffusion (TED) following ion implantation of boron and subsequent annealing steps. This paper explores possible dissolution mechanisms for boron-interstitial clusters during the simulation of a typical annealing process. Using tight-binding molecular dynamics (TBMD) and employing a Goodwin-Skinner-Pettifor sp-based TB model, we have been able to observe the complete dissolution of a B 4 I 4 cluster into the surrounding crystalline silicon matrix. Many unsuccessful attempts to observe dissolution are also presented, highlighting the effect of cluster stability, temperature and the role of vacancies in cluster dissolution. Though we can make no unambiguous statements on the definitive dissolution mechanism of boron-defect clusters based on one successful dissolution event, we can hint at key events that appear to be important, such as the diffusion of self-interstitials (presciently predicted by Pelaz et al. ), the "stranding" of boron atoms in their wake, and the importance of mobile boron-self-interstitial (B-I) pairs. The intrinsic diffusivity of boron in a c-Si lattice and its retardation of the diffusivity of Si self-interstitials is also discussed.     

A conserved asparagine residue in transmembrane segment 1 (TM1) of serotonin transporter dictates chloride-coupled neurotransmitter transport

Na(+)- and Cl(-)-dependent uptake of neurotransmitters via transporters of the SLC6 family, including the human serotonin transporter (SLC6A4), is critical for efficient synaptic transmission. Although residues in the human serotonin transporter involved in direct Cl(-) coordination of human serotonin transport have been identified, the role of Cl(-) in the transport mechanism remains unclear. Through a combination of mutagenesis, chemical modification, substrate and charge flux measurements, and molecular modeling studies, we reveal an unexpected role for the highly conserved transmembrane segment 1 residue Asn-101 in coupling Cl(-) binding to concentrative neurotransmitter uptake.     

Litter size at birth in purebred dogs--a retrospective study of 224 breeds

Despite the long history of purebred dogs and the large number of existing breeds, few studies of canine litter size based upon a large number of breeds exist. Previous studies are either old or include only one or a few selected breeds. The aim of this large-scale retrospective study was to estimate the mean litter size in a large population of purebred dogs and to describe some factors that might influence the litter size. A total of 10,810 litters of 224 breeds registered in the Norwegian Kennel Club from 2006 to 2007 were included in the study. The overall mean litter size at birth was 5.4 (± 0.025). A generalized linear mixed model with a random intercept for breed revealed that the litter size was significantly influenced by the size of the breed, the method of mating and the age of the bitch. A significant interaction between breed size and age was detected, in that the expected number of puppies born decreased more for older bitches of large breeds. Mean litter size increased with breed size, from 3.5 (± 0.04) puppies in miniature breeds to 7.1 (± 0.13) puppies in giant breeds. No effect on litter size was found for the season of birth or the parity of the bitch. The large number of breeds and the detail of the registered information on the litters in this study are unique. In conclusion, the size of the breed, the age of the bitch and the method of mating were found to influence litter size in purebred dogs when controlling for breed, with the size of the breed as the strongest determinant.     

基于PCR技术的DNA分析测试关键要素

大多数国家对转基因生物研究与产业化日趋积极,把发展生物技术作为支撑发展、引领未来的战略选择,力求抢占新一轮经济和科技革命的先机与制高点。随之而来的是公众对转基因产品安全性的关注。转基因生物成分分析作为安全性评价的重要内容,发挥着举足轻重的作用,而基于PCR技术的转基因产品核酸成分分析是最经典、最广泛使用的方法。虽然此方法已普遍应用,但国内外鲜有较为全面的阐述此类分析测试要素的报道。为此,本综述对国内外相关方法的文献资料进行了梳理、比对和研究,结合已有的分析测试实验室的经验,提出了PCR测试体系的关键要素主要是标准和指南、方法的确认、标准物质及能力验证等四个方面,且在文中简明扼要的论述了各个部分的要点,供转基因核酸成分分析及相关领域工作者参考。     

Simulation and investigation of quantum dot effects as internal heat-generator source in breast tumor site

The Pennes bio-heat transfer equation, which introduces the exchange magnitude of heat transfer between tissue and blood, is often used to solve the temperature distribution for thermal imaging and sensing. Near-infrared light has the ability to be used as a non-invasive means of diagnostic imaging within the woman's breast. Due to the diffusive nature of light in different tissue, computational model-based methods are required for functional imaging within the breast. In this article, the time-dependent bio-heat transfer is solved by a numerical method. In our model, the heat generation source (intrinsic and extrinsic) involves laser, metabolism, and quantum dot that the metabolism and heat generated by QDs are considered as intrinsic. We supposed the injected quantum dots would target the tumor site by a passive targeting process and then by interaction of laser radiation and quantum dot, the photoluminescence of quantum dot is converted to heat in the tumor site. The extra generated heat can impact on the extracted heat profile. One of the important applications of this research has led to a sensitivity improvement of the imaging system, which is potentially useful in the diagnosis and detection of breast cancer.     

样品预处理对有机碳同位素分析结果的影响

文中主要阐述样品预处理方法不同对于有机碳同位素分析结果将产生重要影响,并直接关系到由此而得出研究结论的可靠性。分析样品采自扬子地台震旦纪蓝田组剖面,并对相同岩石样品采取两种不同的预处理方法。分析结果显示,得到的两套数据之间存在明显的差值。这种分析差主要是来源于分析样品中残存的碳酸盐。因此,在对全岩分析样品实施有机碳同位素测定之前,务必将分析样品中无机碳除尽。此外,针对目前应用于有机碳同位素分析的样品预处理方法可能存在的问题提出看法。     

Optimized intermolecular potential for nitriles based on Anisotropic United Atoms model

An extension of the anisotropic united atoms intermolecular potential model is proposed for nitriles. The electrostatic part of the intermolecular potential is calculated using atomic charges obtained by a simple Mulliken population analysis. The repulsion-dispersion interaction parameters for methyl and methylene groups are taken from transferable AUA4 literature parameters [Ungerer et al., J. Chem. Phys., 2000, 112, 5499]. Non-bonding Lennard-Jones intermolecular potential parameters are regressed for the carbon and nitrogen atoms of the nitrile group (–C≡N) from experimental vapor-liquid equilibrium data of acetonitrile. Gibbs Ensemble Monte Carlo simulations and experimental data agreement is very good for acetonitrile, and better than previous molecular potential proposed by Hloucha et al. [J. Chem. Phys., 2000, 113, 5401]. The transferability of the resulting potential is then successfully tested, without any further readjustment, to predict vapor-liquid phase equilibrium of propionitrile and n-butyronitrile. Figure Saturated vapour pressure of nitriles calculated in this work by molecular simulation compared to experimental data: a) for acetonitrile and b) for both propionitrile and butyronitrile     

生态系统健康评价方法初探

生态系统是维持人类环境的最基本单元,生态系统功能主要体现在两个方面：一是生态服务功能（service);二是价值功能（goods)这两种功能是人类生态和发展的基础,生态系统健康是保证生态系统功能正常发挥的前提,结构和功能的完整性,具有抵抗干扰和恢复能力（resilience)、稳定和可持续性是生态系统健康的特征,生态系统健康评价需要基于生态系统的结构、功能过程来确定指标,包括生态系统的完整性,适应性和效率,生态系统健康评价主要有两种方法：一是指示物种评价,二是结构功能指标评价,结构功能指标评价包括单指标评价,复合指标评价和指标体系评价,指标体系评价中又包括自然指标体系评价,社会－经济－自然复合生态系统指标体系评价,本文针对生态系统健康的不同评价方法进行了对比研究,同时,针对不同的生态系统类型应选择其健康评价方法方面进行了简要的阐述。     

超声调制生物介质中光子自相关性质研究

本文首次用Monte Carlo方法研究了超声调制生物介质中散射光子的时间自相关性质,讨论了超声参数、介质的散射系数和吸收系数对自相关函数的影响。正常生物组织和病变生物组织的自相关函数有明显的判别,超声调制自相关函数为光学医学诊断提供了一种新参考。