Versatile biosensor vectors for detection and quantification of mercury

Three different whole cell biosensor constructs were made by fusing the mercury inducible promoter, P(mer), and its regulatory gene, merR, from transposon Tn21 with reporter genes luxCDABE, lacZYA, or gfp. In Escherichia coli these biosensor constructs responded to low levels of mercury by producing light, beta-galactosidase or green fluorescent protein, respectively. Since the responses were quantitative, the constructs were used to quantify bioavailable mercury in different environments. The constructs were cloned into mini-Tn5 delivery vectors, thus enabling the transfer of the mer-lux, mer-lac or mer-gfp cassettes to a variety of Gram-negative bacteria. The mer-lux cassette was transferred to a Pseudomonas putida strain, which was used to quantify water-extractable mercury in contaminated soil.     

An application of nuclear magnetic resonance imaging to study migration rates of oil-related residues in estuarine sediments

Organisations such as the Marine Control Pollution Unit of the Department of Transport are at present testing the suitability of burial and landfarming of oily residues in sandy coastal environments as an alternative to landfill sites. The tendency for oil related compounds to sorb to sediments has been extensively investigated, but this has not permitted the 'observation' or measurement of advection/diffusion processes or the breakdown of these compounds within sediments.MRI, which is a multidimensional technique allowing the position of nuclei (most commonly protons) to be charted within a volume, provides a means of monitoring advection and diffusion of oil within sediments, thus offering a method of assessing the harming potential of oils in near-shore environments. A three dimensional MRI analysis of the movement of oil in an organic substrate and in three related estuarine sediments show that, using appropriate parameters, movement of the oil can be both observed and quantified. The results presented in terms of the % change of oil distribution within each sediment sample, show the great potential of MRI in studying protonated contaminants in these materials.     

An overview of viral and viral-like agents in cell culture systems

The first recognition of seriously contaminated biological products occurred almost 100 years ago. More recently, in the second half of this century, the potential for contamination by viral and viral-like agents became obvious when the SV-40 virus was identified as an endogenous agent in the cell cultures used to produce polio vaccines. The history of major contamination incidents is reviewed, and current issues are discussed. This revised version was published online in August 2006 with corrections to the Cover Date.     

Metal binding to the tetrathiolate motif of desulforedoxin and related polypeptides

 Desulforedoxin and the N-terminus of desulfoferrodoxin share a 36 amino acid domain containing a (Cys-S)₄ metal binding site. Recombinant forms of desulforedoxin, an N-terminal fragment of desulfoferrodoxin, and two desulforedoxin mutant proteins were reconstituted with Fe³⁺, Cd²⁺, and Zn²⁺ and relative metal ion affinities assessed by proton titrations. Protons compete with metal for protein ligands, a process that can be followed by monitoring the optical spectrum of the metal-protein complex as a function of pH. For all polypeptides, Fe³⁺ bound with the highest affinity, whereas the affinity of Zn²⁺ was greater than Cd²⁺ in desulforedoxin and the N-terminal fragment of desulfoferrodoxin, but this order was reversed in desulforedoxin mutant proteins. Metal binding in both mutants was significantly impaired. Furthermore, the Fe³⁺ complex of both mutants underwent a time-dependent bleaching process which coincided with increased reactivity of cysteine residues to Ellman's reagent and concomitant metal dissociation. It is hypothesized that this results from an autoredox reaction in which Fe³⁺ is reduced to Fe²⁺ with attendant oxidation of ligand thiols. Received: 17 June 1998 / Accepted: 3 September 1998     

用膨胀床金属亲和层析从淡菜匀浆液中分离纯化纤维素酶

研究了一种新的膨胀床金属亲和层析技术,即将金属亲和层析结合膨胀床层析,直接从淡菜(Blue mussel)匀浆液中纯化纤维素酶。研究了金属亲和配基种类、pH、离子强度及流速对酶吸附和解吸的影响,确定了酶洗脱条件和介质再生条件。一步可纯化纤维素酶194倍,酶收率达82%。本方法不需要预先去除细胞碎片,而且处理速率比传统层析技术高3～4倍。     

Fish fauna as an indicator of environmental quality in an urbanised region of the Amazon estuary

This study describes the biological importance of Guajará Bay (Belém, Pará, Brazil) for fish fauna and presents a diagnosis of water quality in the main channel and creeks, using the icthyofauna as an ecological indicator. A total of 567 individuals from 40 species were identified. About 58% of these use Guajará Bay as a nursery ground, 49 and 81% use the bay as a breeding and feeding ground, respectively. There were no significant differences between environments as measured by the diversity index; however, fish relative abundance (catch per unit of effort) was greater in the creeks than in the main channel. A significant difference was detected in the fish fauna inhabiting the main channel compared with the creeks. In the main channel, icthyofauna significantly differed during December relative to other months.     

Contrasting Effects of Farmyard Manure (FYM) and Compost for Remediation of Metal Contaminated Soil

We investigated effect of farm yard manure (FYM) and compost applied to metal contaminated soil at rate of 1% (FYM-1, compost-1), 2% (FYM-2, compost-2), and 3% (FYM-3, compost-3). FYM significantly (P < 0.001) increased dry weights of shoots and roots while compost increased root dry weight compared to control. Amendments significantly increased nickel (Ni) in shoots and roots of maize except compost applied at 1%. FYM-3 and -1 caused maximum Ni in shoots (11.42 mg kg^?1) and roots (80.92 mg kg^?1), respectively while compost-2 caused maximum Ni (14.08 mg kg^?1) and (163.87 mg kg^?1) in shoots and roots, respectively. Plants grown in pots amended with FYM-2 and compost-1 contained minimum Cu (30.12 and 30.11 mg kg^?1) in shoots, respectively. FYM-2 and compost-2 caused minimum zinc (Zn) (59.08 and 66.0 mg kg^?1) in maize shoots, respectively. FYM-2 caused minimum Mn in maize shoots while compost increased Mn in shoots and roots compared to control. FYM and compost increased the ammonium bicarbonate diethylene triamine penta acetic acid (AB-DTPA) extractable Ni and Mn in the soil and decreased Cu and Zn. Lower remediation factors for all metals with compost indicated that compost was effective to stabilize the metals in soil compared to FYM.     

The EDTA Amendment in Phytoextraction of 134Cs From Soil by Indian Mustard (Brassica juncea)

Soil contamination with radiocaesium is a significant problem at any countries when a nuclear accident occurred. Recently, phytoextraction technique is developed to remediate the contaminated environment. However, the application is limited by the availability of the contaminant for root uptake. Therefore, a green house trial experiment of soil amendment with ethylene diamine tetraacetic acid (EDTA) has been conducted to examine ¹³⁴Cs availability for root uptake. Two groups of Indian mustard (Brassica juncea) were cultivated in ¹³⁴Cs contaminated soil. The soil in the first group was treated with EDTA amendment, while the other was not. Plant growth was observed gravimetrically and the ¹³⁴Cs concentration in soil as well as plants were determined using gamma spectrometry. The plant uptake capacity was determined as transfer factor (F_v), and the F_v values of 0.22 ± 0.0786 and 0.12 ± 0.039 were obtained for the soil treated with and without EDTA amendment, respectively. The phytoextraction efficiency of the plant cultivated in ¹³⁴Cs contaminated soil both with and without EDTA amendment was low. The EDTA amendment to the soil seems to enhance the ¹³⁴Cs availability for root uptake of Indian mustard and can still be considered to assist the field phytoremediation of contaminated soil.     

Using Contaminated Plants Involved in Phytoremediation for Anaerobic Digestion

This study investigated the anaerobic digestion capability of five plants and the effects of copper (Cu) and S,S’-ethylenediaminedisuccinic acid (EDDS, a chelator widely used in chelant-assisted phytoremediation) on biogas production to determine a feasible disposal method for plants used in remediation. The results showed that in addition to Phytolacca americana L., plants such as Zea mays L., Brassica napus L., Elsholtzia splendens Nakai ex F. Maekawa, and Oenothera biennis L. performed well in biogas production. Among these, O. biennis required the shortest period to finish anaerobic digestion. Compared to normal plants with low Cu content, the plants used in remediation with increased Cu levels (100 mg kg^?1) not only promoted anaerobic digestion and required a shorter anaerobic digestion time, but also increased the methane content in biogas. When the Cu content in plants increased to 500, 1000, and 5000 mg kg^?1, the cumulative biogas production decreased by 12.3%, 14.6%, and 41.2%, respectively. Studies also found that EDDS conspicuously restrained biogas production from anaerobic digestion. The results suggest that anaerobic digestion has great potential for the disposal of contaminated plants and may provide a solution for the resource utilization of plants used in remediation.     

Accumulation of Hydrocarbons by Maize (Zea mays L.) in Remediation of Soils Contaminated with Crude Oil

This study has investigated the use of screened maize for remediation of soil contaminated with crude oil. Pots experiment was carried out for 60 days by transplanting maize seedlings into spiked soils. The results showed that certain amount of crude oil in soil (≤2 147 mg·kg^?1) could enhance the production of shoot biomass of maize. Higher concentration (6 373 mg·kg^?1) did not significantly inhibit the growth of plant maize (including shoot and root). Analysis of plant shoot by GC-MS showed that low molecular weight polycyclic aromatic hydrocarbons (PAHs) were detected in maize tissues, but PAHs concentration in the plant did not increase with higher concentration of crude oil in soil. The reduction of total petroleum hydrocarbon in planted soil was up to 52.21–72.84%, while that of the corresponding controls was only 25.85–34.22% in two months. In addition, data from physiological and biochemical indexes demonstrated a favorable adaptability of maize to crude oil pollution stress. This study suggested that the use of maize (Zea mays L.) was a good choice for remediation of soil contaminated with petroleum within a certain range of concentrations.