Multiple Modes of Protein–Protein Interactions Promote RNP Granule Assembly

Eukaryotic cells are known to contain a wide variety of RNA–protein assemblies, collectively referred to as RNP granules. RNP granules form from a combination of RNA–RNA, protein–RNA, and protein–protein interactions. In addition, RNP granules are enriched in proteins with intrinsically disordered regions (IDRs), which are frequently appended to a well-folded domain of the same protein. This structural organization of RNP granule components allows for a diverse set of protein–protein interactions including traditional structured interactions between well-folded domains, interactions of short linear motifs in IDRs with the surface of well-folded domains, interactions of short motifs within IDRs that weakly interact with related motifs, and weak interactions involving at most transient ordering of IDRs and folded domains with other components. In addition, both well-folded domains and IDRs in granule components frequently interact with RNA and thereby can contribute to RNP granule assembly. We discuss the contribution of these interactions to liquid–liquid phase separation and the possible role of phase separation in the assembly of RNP granules. We expect that these principles also apply to other non-membrane bound organelles and large assemblies in the cell.     

Effect of temperature and cold stratification on seed germination of the Mediterranean wild aromatic Clinopodium sandalioticum (Lamiaceae)

A germination study was carried out on seeds of Clinopodium sandalioticum (Bacch. & Brullo) Bacch. & Brullo ex Peruzzi & Conti (Lamiaceae), a wild aromatic plant endemic to Sardinia. Seeds were incubated at a range of constant (5–25°C) and an alternating temperatures regime (25/10°C), with 12 hours of irradiance per day. The results achieved at 10°C were also compared with those obtained after a period of cold stratification at 5°C for three months. Final seed germination ranged from ca. 28% (5°C) to ca. 72% (25/10°C). A base temperature for germination (T_b) of ca. 5°C and a thermal constant for 50% germination (S) of 89.3°Cd were identified and an optimal temperature for germination (T_o) was estimated to be comprised between 20 and 25°C. Cold stratification negatively affected seed viability and germination at 10°C. Although a typical “Mediterranean germination syndrome”, could not be detected for C. sandalioticum seeds, these results were coherent with those previously reported for other Mediterranean Lamiaceae species.     

Effects of feeding regime on growth rate in the Mediterranean Sea anemone Actinia equina (Linnaeus)

Polyps of Actinia equina are the most common sea anemones in the rocky intertidal zone of the Mediterranean coast of Israel, where they occur in one of the southernmost populations of this species in the northern hemisphere. We examined effects of feeding rate on polyp growth at ambient sea temperature for this population. Under laboratory conditions, polyps were left unfed, or were fed with brine shrimp (Artemia) once every 2 weeks, once a week, or twice a week. Of the four experimental treatments, only feeding twice a week resulted in polyp growth; under all other regimes, the sea anemones lost body mass. We conclude that a high rate of feeding is required at sea temperatures in the eastern Mediterranean, where these sea anemones may have high metabolic rates relative to more northern populations.     

The American brine shrimp as an exotic invasive species in the western Mediterranean

The hypersaline environments and salterns present in the western Mediterranean region (including Italy, southern France, the Iberian Peninsula and Morocco) contain autochthonous forms of the brine shrimp Artemia, with parthenogenetic diploid and tetraploid strains coexisting with the bisexual species A. salina. Introduced populations of the American brine shrimp A. franciscana have also been recorded in these Mediterranean environments since the 1980s. Based on brine shrimp cyst samples collected in these countries from 1980 until 2002, we were able to establish the present distribution of autochthonous brine shrimps and of A. franciscana, which is shown to be an expanding invasive species. The results obtained show that A. franciscana is now the dominant Artemia species in Portuguese salterns, along the French Mediterranean coast and in Cadiz bay (Spain). Co-occurrence of autochthonous (parthenogenetic) and American brine shrimp populations was observed in Morocco (Mar Chica) and France (Aigues Mortes), whereas A. franciscana was not found in Italian cyst samples. The results suggest these exotic A. franciscana populations originate as intentional or non-intentional inoculations through aquacultural (hatchery effluents) or pet market activities, and suggest that the native species can be rapidly replaced by the exotic species. This revised version was published online in July 2006 with corrections to the Cover Date.     

防治荒漠化的“三圈”生态-生产范式机理及其功能

防治荒漠化的“三圈”生态-生产范式,是干旱生态系统优化与重建的新结构。根据在鄂尔多斯和新疆等地的研究和实践,从干旱生态系统结构、过程和功能来讨论荒漠化防治的“三圈”范式。地理圈层结构（地理地带性）是“三圈”范式的自然地理背景。从宏观尺度和功能方面划分,“三圈”范式在空间尺度上有大“三圈”和小“三圈”之分,大“三圈”控制洲际范围的荒漠化扩展及沙尘暴蔓延,小“三圈”则以控制区域性风沙活动、沙尘暴和就地起沙的危害。防治荒漠化工程是复杂的多元组合和多功能的系统,我国西北地区受荒漠化影响严重,宏观的大“三圈”与多区域的小“三圈”有机结合,形成圈圈相护、层层设防的严密防护与生产系统,有效地控制大范围风沙危害、改善地方气候与小气候,并对发展经济,提高人民生活发挥重要作用。因此,“三圈”范式的概念与结构既是以自然地理地带性为基础,又是人类对自然、环境与生态系统格局的规律认识,更是科学的人类恢复、重建干旱区生态环境与可持续发展的生态设计范式。     

Human disturbance and environmental factors as drivers of long‐term post‐fire regeneration patterns in Mediterranean forests

Question: What are the main forces driving natural regeneration in burned mature Mediterranean forests in the medium‐long term and what are the likely successional trajectories of unmanaged vegetation? Location: Valencia Region, eastern Spain. Methods: A wildfire burned 33 000 ha of Pinus halepensis and P. pinaster forest in 1979, and subsequent smaller wildfires took place between 1984 and 1996. The study was designed to sample the range of environmental and disturbance (fire recurrence and land use) conditions. The territory was classified into 17 different geomorphological and fire‐recurrence units. Vegetation cover and floristic composition were measured on a total of 113 plots (1000 m² each) randomly selected within these units. Results: The results show that 23 years after the fire the regenerated vegetation consists of successional shrublands, and that forest ecosystem resilience can be very low. The vegetation presents a strong correlation with most of the environmental variables, but fire (one or two fires), soil type and land use (in that order) are the main drivers of vegetation composition. Quercus coccifera shrublands persist on limestone soils while diverse types of other shrublands (dominated by seeder species) are found on marl soils. Conclusions: The results of this study indicate that disturbance factors strongly coupled to human activities, such as land use and fire, play a critical role in the current state of vegetation. Fire creates vegetation patches in different successional states while land use and soil type define the different types of shrubland in terms of their specific composition.     

西欧地中海地区中新世以来的植被演化和现代地中海植被的形成

从距今2500万年的中新世初到更新世,欧洲地中海沿岸地区的植被是从东亚型的热带——亚热带常绿阔叶林逐渐过渡为旱生性的蒿——藜草原。古热带和亚洲、北美成份从晚中新世起逐渐消失,少数一直延续到中更新世。孢粉分析表明,地中海成分从中上新世起有明显增加,地中海常绿硬叶林的发展与北极冰盖的形成密切相关。     

The tropical history and future of the Mediterranean biota and the West African enigma

Aim Since the opening of the Suez Canal in 1869, many tropical taxa from the Indo‐West Pacific (IWP) realm have entered the Mediterranean Sea, which is experiencing rising temperatures. My aims are: (1) to compare biogeographically this tropical transformation of the Mediterranean biota with the tropical faunas of the Mediterranean and adjacent southern European and West African seas during the Late Oligocene to Pliocene interval; (2) to infer the relative contributions of the tropical eastern Atlantic and IWP to the tropical component of the marine biota in southern Europe; and (3) to understand why West Africa is not now a major source of warm‐water species. Location Southern Europe, including the Mediterranean Sea, and the coast of tropical West Africa. Methods I surveyed the literature on fossil and living shell‐bearing molluscs to infer the sources and fates of tropical subgenus‐level taxa living in southern Europe and West Africa during the Late Oligocene to Pliocene interval. Results Ninety‐four taxa disappeared from the tropical eastern Atlantic (including the Mediterranean) but persisted elsewhere in the tropics, mainly in the IWP (81 taxa, 86%) and to a lesser extent in tropical America (36 taxa, 38%). Nine taxa inferred to have arrived in the tropical eastern Atlantic from the west after the Pliocene did not enter the Mediterranean. The modern West African fauna is today isolated from that of other parts of the marine tropics. Main conclusions Taxa now entering the Mediterranean through the Suez Canal are re‐establishing a link with the IWP that last existed 16 million years ago. This IWP element, which evolved under oligotrophic conditions and under a regime of intense anti‐predatory selection, will continue to expand in the increasingly warm and increasingly oligotrophic Mediterranean. The IWP source fauna contrasts with the tropical West African biota, which evolved under productive conditions and in a regime of less anti‐predatory specialization. Until now, the post‐Pliocene West African source area has been isolated from the Mediterranean by cold upwelling. If further warming should reduce this barrier, as occurred during the productive and warm Early Pliocene, the Mediterranean could become a meeting place for two tropical faunas of contrasting source conditions.