Multiple interactions between nuclear proteins of Zea mays and the promoter of the Shrunken gene

Summary Nuclear proteins were extracted from isolated nuclei of immature maize kernels. The promoter region (1.5 kb) of the Shrunken gene, which is highly transcribed in the developing endosperm of the kernel, was scanned for protein-DNA interactions. Several promoter fragments showed protein-DNA complex formation in gel retardation experiments. Two different nucleo-protein complexes (MNP1 and MNP2) have been distinguished in competition and DNase I footprinting experiments. Both nuclear DNA-binding activities are able to recognize multiple sites distributed over a 1.5 kb upstream region of the Shrunken gene. Some of the binding sites established in the in vitro reconstitution experiments are located near to DNase I hypersensitive sites found in the promoter of the Shrunken gene (Frommer and Starlinger 1988).     

Identification of Multiple Phosphorylation Sites on Maize Endosperm Starch Branching Enzyme IIb,a Key Enzyme in Amylopectin Biosynthesis

Starch branching enzyme IIb (SBEIIb) plays a crucial role in amylopectin biosynthesis in maize endosperm by defining the structural and functional properties of storage starch and is regulated by protein phosphorylation. Native and recombinant maize SBEIIb were used as substrates for amyloplast protein kinases to identify phosphorylation sites on the protein. A multidisciplinary approach involving bioinformatics, site-directed mutagenesis, and mass spectrometry identified three phosphorylation sites at Ser residues: Ser⁶⁴⁹, Ser²⁸⁶, and Ser²⁹⁷. Two Ca²⁺-dependent protein kinase activities were partially purified from amyloplasts, termed K1, responsible for Ser⁶⁴⁹ and Ser²⁸⁶ phosphorylation, and K2, responsible for Ser⁶⁴⁹ and Ser²⁹⁷ phosphorylation. The Ser²⁸⁶ and Ser²⁹⁷ phosphorylation sites are conserved in all plant branching enzymes and are located at opposite openings of the 8-stranded parallel β-barrel of the active site, which is involved with substrate binding and catalysis. Molecular dynamics simulation analysis indicates that phospho-Ser²⁹⁷ forms a stable salt bridge with Arg⁶⁶⁵, part of a conserved Cys-containing domain in plant branching enzymes. Ser⁶⁴⁹ conservation appears confined to the enzyme in cereals and is not universal, and is presumably associated with functions specific to seed storage. The implications of SBEIIb phosphorylation are considered in terms of the role of the enzyme and the importance of starch biosynthesis for yield and biotechnological application.     

New orientations of in vitro models: why? how?

From the beginning of cell cultures, the aim of all researchers has been to perform culture of a pure population of a particular cell type. However, the monolayer culture (of one type of cell) rapidly showed its limits concerning growth capacity and especially maintenance of the differentiated functions. These findings led to the design of increasingly complex in vitro models. Among them we can distinguish culture onto cellular matrices and into cellular matrices, or tridimensional cell culture. Cocultures in two-compartment dishes or one-compartment dishes, heteroculture, and tissue slices in vitro are other approaches deserving mention. Several examples were reported. Finally, immortalized and transfected cell lines exhibit a different state of complexity.     

Influence of growth form of Arena fatua L. on the growth and yield of Triticum aestivum L.

In a field experiment, all components of winter wheat grain yield, except grain number per ear, were reduced by wild-oat competition, and more so by a prostrate form of wild-oat than by an upright form. The prostrate form, ‘Churston’, shaded the crop at anthesis. Although there were no significant differences in photosynthetic activity in the flag leaves of wheat at saturating light intensities during the later stages of grain filling, it is likely that differences in growth form, height, weight and area of these two forms of wild-oat, competing principally for light, accounted for their different effects on wheat grain yield.     

Growth factors and gangliosides: A possible new perspective in neuronal growth control

For many permanent cell lines the transition from a growing (P) to a resting (R) state is reversibly controlled by growth factors present in serum. This P-to-R transition was studied in a neuronal cell line (B 104) with respect to the action of serum, dibutyryl cyclic AMP (DBcAMP), gangliosides, and a glioma cell-produced growth factor GGF. In this cell system gangliosides seem to act as differentiation and survival factors. The kinetics of uptake of radioactively labeled gangliosides and survival experiments both support the idea of the stable incorporation of exogenously added gangliosides into the cells. Based on the experimental evidence a new model of cell development is proposed. Thus in addition to the R or G₀ state, which in this cell system is rather unstable and probably regulated by cyclic nucleotides, we postulate a differentiated D state, which is controlled by gangliosides and which is characterized by its stability (survival time). This D compartment seems to be closer to the in vivo differentiated neuron than does the R or P state. The possible mechanisms for the action of gangliosides are discussed.     

A new genetic variation of the malate dehydrogenase-like enzyme (MDL-1) in inbred rats and its possible linkage

A new polymorphism in the mitochondrial fraction of kidney homogenates was found by using discontinuous polyacrylamide gel electrophoresis. The polymorphism is tentatively designated MDL-1, since the enzyme was visualized with the staining solution for NADP-malate dehydrogenase (MOD) but differs from MOD. MDL-1 expresses three phenotypes: MDL-1A (fast), MDL-1 AB (intermediate), and MDL-1B (slow). Progeny testing from genetic crosses indicates that its expression is determined by two codominant alleles, Mdl-1a and Mdl-1b, which segregate in a simple Mendelian fashion. Preliminary linkage data suggest that the locus for MDL-1 is probably linked to the nonagouti-agouti locus in rat linkage group IV.This investigation was supported in part by Grant 537028 from the Ministry of Education, Science and Culture, Japan.     

Ctdnep1 and Eps8L2 regulate dorsal actin cables for nuclear positioning during cell migration

1. Download : Download high-res image (181KB)
2. Download : Download full-size image

     

Wild Mice As Bountiful Resources of Novel Genetic Variants for Quantitative Traits

Most traits of biological importance, including traits for human complex diseases (e.g., obesity and diabetes), are continuously distributed. These complex or quantitative traits are controlled by multiple genetic loci called QTLs (quantitative trait loci), environments and their interactions. The laboratory mouse has long been used as a pilot animal model for understanding the genetic architecture of quantitative traits. Next-generation sequencing analyses and genome-wide SNP (single nucleotide polymorphism) analyses of mouse genomes have revealed that classical inbred strains commonly used throughout the world are derived from a few fancy mice with limited and non-randomly distributed genetic diversity that occurs in nature and also indicated that their genomes are predominantly Mus musculus domesticus in origin. Many QTLs for a huge variety of traits have so far been discovered from a very limited gene pool of classical inbred strains. However, wild M. musculus mice consisting of five subspecies widely inhabit areas all over the world, and hence a number of novel QTLs may still lie undiscovered in gene pools of the wild mice. Some of the QTLs are expected to improve our understanding of human complex diseases. Using wild M. musculus subspecies in Asia as examples, this review illustrates that wild mice are untapped natural resources for valuable QTL discovery.