Answering biological questions: querying a systems biology database for nutrigenomics

The requirement of systems biology for connecting different levels of biological research leads directly to a need for integrating vast amounts of diverse information in general and of omics data in particular. The nutritional phenotype database addresses this challenge for nutrigenomics. A particularly urgent objective in coping with the data avalanche is making biologically meaningful information accessible to the researcher. This contribution describes how we intend to meet this objective with the nutritional phenotype database. We outline relevant parts of the system architecture, describe the kinds of data managed by it, and show how the system can support retrieval of biologically meaningful information by means of ontologies, full-text queries, and structured queries. Our contribution points out critical points, describes several technical hurdles. It demonstrates how pathway analysis can improve queries and comparisons for nutrition studies. Finally, three directions for future research are given.     

Ethnic intermarriage in Britain

Hebrewism, Globalized Israeliness and Mizrakhiut are examined as three major variants of Israeliness that struggle between them over dominance in the Israeli field of national culture. By discussing typical styles of literature and popular music associated with each variant, it is demonstrated how each is committed, albeit in a different way, to the belief in the idea of 'one nation - one culture', and to the construction of one, unique 'Israeli Culture'. Israel serves as a case to support a general argument about contemporary national cultures being a 'Bourdieusian' field in which invented tradition, global culture and sub-national / 'ethnic' culture are the major types of positions, struggling between them to define the dominant national cultural capital.     

Racializing teenage pregnancy: 'culture' and 'tradition' in the South African scientific literature

The signifiers, 'race', 'culture' or 'ethnicity' are utilized in the teenage pregnancy literature (1) to highlight 'differences' in adolescent sexual and reproductive behaviour and (2) as explanatory tools. When 'white' teenagers are the focus of research, psychological explanations are usually invoked, whereas for 'black' teenagers, explanations are socio-cultural in nature. In this article, we explore how, through a process of racialization, the psychomedical literature on teenage pregnancy in South Africa contributes to the entrenchment of 'race', 'culture' and 'ethnicity' as fixed, 'natural' signifiers. We utilize Derrida's notion of différance , together with Phoenix and Woollett's adaptation - 'normalized absence/pathologized presence' - to indicate how 'black' people are cast as the Other, the pathologized presence which relies on the normalized absent trace, 'whiteness', for definition. We analyse how the notions of 'tradition' and 'culture' are deployed to sanitize or disguise the underlying racializing project. 'Black' is exoticized and rendered strange and thus open to scrutiny, monitoring and intervention. 'Culture' and 'tradition' appeal to the myth of origin, thus providing pseudohistorical explanations which essentialize and naturalize racialized collectivities.     

Post-translational Modifications and Mass Spectrometry Detection

In this review, we provide a comprehensive bibliographic overview of the role of mass spectrometry and the recent technical developments in the detection of post-translational modifications (PTMs). We briefly describe the principles of mass spectrometry for detecting PTMs and the protein and peptide enrichment strategies for PTM analysis, including phosphorylation, acetylation and oxidation. This review presents a bibliographic overview of the scientific achievements and the recent technical development in the detection of PTMs is provided. In order to ascertain the state of the art in mass spectrometry and proteomics methodologies for the study of PTMs, we analyzed all the PTM data introduced in the Universal Protein Resource (UniProt) and the literature published in the last three years. The evolution of curated data in UniProt for proteins annotated as being post-translationally modified is also analyzed. Additionally, we have undertaken a careful analysis of the research articles published in the years 2010 to 2012 reporting the detection of PTMs in biological samples by mass spectrometry.     

基于微信公众平台的文献定制服务

文献学习是科研人员跟踪领域进展,思考课题发展的必要途径。为了解决移动端跟踪文献的繁琐问题,本文借助移动互联网即时性、便捷性、个性化等特性,开发了基于微信公众平台的文献定制服务。该服务通过解析用户输入,动态匹配自构建的期刊名表,索引Pub Med数据库,实现期刊个性化订阅、文献查询、影响因子查询等便捷功能。对于提高科研人员的文献学习效率,降低追踪文献的时间成本具有较大的价值。     

Factors affecting the levels reported for vanadium in human serum

Chemometric techniques may be applied to extract significant analytical information from a series of publications that present methods and results for determining trace elements in biological material. This approach was applied to the total of 28 papers published in 1971–1988 that reported determination of vanadium in normal human serum or plasma; the levels spanned four orders of magnitude. The most important factors affecting the analytical results were found to be the choice of analytical method and the experience of the laboratory in trace-element research. Results from the most experienced laboratories with the best analytical methods were found to be correlated with the precision of the data, indicating that the correct concentration of vanadium would be<1 mg/m³. This is in agreement with results subsequently obtained by radiochemical neutron activation analysis of eight samples of serum from Danish colleagues.     

脑发育性静脉畸形9例临床影像特征分析及文献复习

目的:研究脑发育性静脉畸形(Cerebral Developmental Venous Anomalies,CDVA)临床及影像学特征及复习CDVA文献。方法:回顾性收集了自2011年11月至2014年3月我科确诊的9例CDVA的病人,对其临床特征、影像学检查方法包括电子计算机断层扫描(Computed Tomography,CT)、核磁共振成像(Magnetic Resonance Imaging,MRI)、数字减影血管造影(Digital Subtraction Angiography,DSA)及特征进行分析并对相关文献进行复习。结果:(1)临床症状:9例病人的临床症状包括头晕4例(4/9)、头痛4例(4/9)、恶心不适2例(2/9)、站立不稳1例((1/9)、小脑出血史1例(1/9)、眼部症状行眼科检查偶然发现小脑CDVA1例(1/9);(2)病变部位:病变位于幕上4例(4/9);幕下5例(5/9);(3)影像学检查:9例病人中,6例行CT平扫或增强扫描(3例平扫,3例平扫+增强);4例行MRI(1例平扫,3例平扫+增强);3例行DSA检查;(4)影像学特点:CT增强及重建、MRI的T1WI增强、SWI、MRA及DSA静脉期像均可显示出髓静脉及其形成的特征性"海蛇头"征象和其引流静脉。结论:CT、MRI、DSA影像学方法均可用于CDVA的诊断,在临床实践中需根据需要优化选择联合应用。     

对我国公立医院集团相关研究的文献分析

目的:对我国公立医院集团的相关研究进行文献分析,找出特点与重要结论进行归纳。方法:通过适宜的文献检索策略,在相关数据库获取合适的文献,根据文献研究的要求,对其进行分析汇总。结果:筛选确定18篇实证研究文献、3篇理论研究文献,并根据之前确定的文献分析方法分析其研究内容与结论,通过计量的方式总结目前实证研究的重点,同时通过归纳,总结目前理论研究的成果。结论:医疗机构外部环境、内部环境与合作条件是研究我国公立医院集团的几个最常见的因素。     

基于文献可视化分析的近30年肠道菌群研究趋势及展望

目的 全面分析近30年国内外肠道菌群相关研究的发展现状、研究热点及前沿动态,为本领域研究方向提供可视化分析数据.方法 以中国知网、Web of Science为来源数据库,检索肠道菌群相关文献,应用CiteSpace(5.5.R2)软件对作者、机构、关键词和被引文献进行共现分析、聚类分析和可视化表达,并对关键词进行突显...     

Bibliography of the living coelacanth Latimeria chalumnae,with comments on publication trends

Synopsis A list of published references on the coelacanth Latimeria chalumnae is provided. All known publications in the scientific literature are included as well as popular articles and press reports that are considered to provide new information or interpretations. Marked trends are noticeable in the literature as different disciplines have been applied to research on the coelacanth over the past five decades. The bibliography lists a total of 823 publications including 490 papers in journals, 37 books, 3 theses, 45 chapters in books, 166 popular articles, 22 reports and 60 newspaper articles. Studies on taxonomy and morphology initially dominated the literature followed by reports on research in the fields of physiology, behaviour, breeding biology, ecology and conservation as frozen and eventually live specimens became available for study. The literature on the living coelacanth is predominantly in English, French, Japanese and German but references in 12 other languages were also traced. The dominant authors in the first decades of coelacanth research were the French scientists J. Millot and J. Anthony and the South African describer of the first and second coelacanths, J.L.B. Smith. In subsequent years French, British, American, South African, Japanese, Canadian and German authors, among others, have made significant contributions.