Integrated computational approaches to screen gene expression data to determine key genes and therapeutic targets for type-2 diabetes mellitus

There is a rapid rise in cases of Type-2-diabetes mellitus (T2DM) globally, irrespective of the geography, ethnicity or any other variable factors. The molecular mechanisms that could cause the condition of T2DM need to be more thoroughly analysed to understand the clinical manifestations and to derive better therapeutic regimes. Tools in bioinformatics are used to trace out key gene elements and to identify the key causative gene elements and their possible therapeutic agents. Microarray datasets were retrieved from the Gene expression omnibus database and studied using R to derive different expressed gene (DEG) elements. With the comparison of the expressed genes with disease specific genes in DisGeNET, the final annotated genes were taken for analysis. Gene Ontology studies, Protein–protein interaction (PPI), Co-expression analysis, Gene-drug interactions were performed to scale down the hub genes and to identify the novelty across the genes analysed so far. In vivo and invitro analysis of key genes and the trace of interaction pathway is crucial to better understand the unique outcomes from the novel genes, forming the basis to understand the pathway that ends up causing T2DM. Afterwards, docking was executed enabling recognition of interacting residues involved in inhibition. The complex CCL5-265 and CD8A-40585 thus docked showed best results as is evident from its PCA analysis and MMGBSA calculation. There is now scope for deriving candidate drugs that could possibly detect personalized therapies for T2DM.     

Purification and characterization of thermostable H<Subscript>2</Subscript>O<Subscript>2</Subscript>-forming NADH oxidase from 2-phenylethanol-assimilating <Emphasis Type="Italic">Brevibacterium</Emphasis> sp. KU1309

A cytoplasmic NADH oxidase (NOX) was purified from a soil bacteria, Brevibacterium sp. KU1309, which is able to grow in the medium containing 2-phenylethanol as the sole source of carbon under an aerobic condition. The enzyme catalyzed the oxidation of NADH to NAD+ involving two-electron reduction of O2 to H2O2. The molecular weight of the enzyme was estimated to be 102 kDa by gel filtration and 57 kDa by SDS-PAGE, which indicates that the NOX was a homodimer consisting of a single subunit. The enzyme was stable up to 70 degrees C at a broad range of pH from 7 to 11. The enzyme activity increased about ten-fold with the addition of ammonium salt, while it was inhibited by Zn2+ (39%), Cu2+ (41%), Hg2+ (72%) and Ag+ (37%). The enzyme acts on NADH, but not on NADPH. The regeneration of NAD+ utilizing this enzyme made selective oxidation of mandelic acid or L: -phenylalanine possible. This thermostable enzyme is expected to be applicable as a useful biocatalyst for NAD+ recycling.     

整合电路理论的生态廊道及其重要性识别

景观连接度被认为是影响诸多生态过程的一个重要因素.基于最小累积阻力模型的最小成本路径识别方法可以有效识别异质性景观中的功能连接,已被广泛应用到景观的功能连接评价与生态廊道模拟的研究中.基于电路理论的连接度模型用电阻代替了图论中的边、用电阻距离代替成本距离,来衡量异质性景观的功能连接.本文以SIMMAP 2.0软件生成的模拟景观为对象,借助于Linkage Mapper工具和Circuitscape软件,探讨如何将最小累积阻力模型与基于电路理论的连接度模型相结合来识别生态廊道及其景观要素的相对重要性.结果表明: 两种模型在应用中各有优势,互为补充.最小成本路径方法可以有效识别栖息地之间的最小成本廊道,基于电路理论的连接度模型通过电流密度的计算可以有效识别对景观连接性有重要影响的景观要素和“夹点”地区,并且“夹点”的位置不受廊道宽度的影响,在廊道重要性识别研究中具有明显优势.该方法可为区域生态保护规划和生态廊道设计提供科学依据.     

Reproductive significance of feeding on saprobic and arbuscular mycorrhizal fungi by the collembolan, Folsomia candida

1. Collembolans have often been credited with negatively affecting arbuscular mycorrhizal (AM) symbioses, mainly by grazing and severing the associated external fungal network from host roots. However, most previous experiments were performed using relatively 'clean' systems where other, non-mycorrhizal, fungi were largely excluded. Yet, plant rhizospheres harbour a wide variety of highly palatable non-AM fungi, most of which have saprobic lifestyles.
2. In this study we isolated and cultured several rhizosphere fungi, and the collembolan , Folsomia candida , from the Long-Term Mycorrhiza Research Site, University of Guelph, Canada, to test the hypothesis that, given a choice, collembolans would prefer to feed on saprobic fungi and that such a choice is of adaptive significance to the animals.
3. A laboratory food preference experiment revealed that F. candida favours common saprobic fungi over a variety of AM fungi. Coincidentally, fecundity levels across two Folsomia generations were higher when animals fed exclusively on the preferred fungus, Alternaria alternata . When fed less palatable fungi, fecundity was greatly reduced; in fact animals from the F1 generation were unable to produce any eggs when placed on an exclusive diet of one of the following three AM fungi, Acaulospora spinosa, Scutellospora calospora and Gigaspora gigantea .
4. These results indicate that a strict diet of AM fungi by collembolans has reproductive consequences. Therefore, we propose that under natural conditions these animals spend more time feeding on common saprobic fungi rather than their AM counterparts. This suggests that previous 'clean' studies that investigated the interactions between collembolans and AM fungi may have reported exaggerated effects of animal grazing. The influence of collembolans on the functioning of AM symbioses, under more natural conditions, remains not well understood.     

Theories for ecological restoration in changing environment: Toward ‘futuristic’ restoration

Ecological restoration is one of the fastest growing fields in applied ecology providing new ideas and opportunities for biological conservation and natural resource management. Despite countless attempts in the past, large portions of restoration projects have been considered unsuccessful mainly due to: unrealistic goals; inadequate restoration plans based on an ad-hoc approach; lack of explicit and quantified evaluation criteria for restoration success; lack of ecological understanding; social, economic, and political constraints; or combinations of these factors. Existing ecological theories, particularly succession theories, may provide a conceptual framework for a restoration trajectory. However, projecting a desirable trajectory and outcome is often challenged by the unpredictability of ecological communities in the changing environment. Particularly, the sustainability of reconstructed historic ecosystems appears to be an unlikely goal in the ever-changing and unpredictable future environment. This paper calls for a shift in the restoration paradigm from historic to futuristic. A futuristic restoration is: (i) to set realistic and dynamic (instead of static) goals for future, instead of past, environment; (ii) to assume multiple trajectories acknowledging the unpredictable nature of ecological communities and ecosystems; (iii) to take an ecosystem or landscape approach, instead of ad-hoc gardening, for both function and structure; (iv) to evaluate the restoration progress with explicit criteria, based on quantitative inference; and (v) to maintain long-term monitoring of restoration outcomes. A theoretical framework for futuristic restoration, in terms of goals, trajectories, evaluation criteria, and monitoring, along with a historical perspective is presented in this paper.     

基于"经筋理论"针刀治疗对早中期膝骨关节炎患者骨代谢指标和血清TIMP-1、MMP-3、MMP-13的影响

摘要 目的：探讨基于"经筋理论"针刀治疗对早中期膝骨关节炎（KOA）患者骨代谢指标和血清金属蛋白酶抑制物-1（TIMP-1）、基质金属蛋白酶（MMP）-3、MMP-13的影响。方法：根据随机数字表法,将2021年1月至2023年1月期间就诊于新疆医科大学附属第一医院的120例早中期KOA患者分为对照组（n=60,常规治疗）和研究组（n=60,对照组的基础上接受"经筋理论"针刀治疗）。对比两组疗效、量表评分[疼痛视觉模拟评分（VAS）、西安大略和麦克马斯特大学骨关节炎调查表（WOMAC）]、骨代谢指标[抗酒石酸盐酸性磷酸酶异构体（TRACP-5b）、骨特异性碱性磷酸酶（BALP）、骨钙素（BGP）]和血清TIMP-1、MMP-3、MMP-13。结果：与对照组相比,研究组的临床总有效率更高（P<0.05）。与对照组相比,研究组治疗后WOMAC、VAS评分和血清MMP-3、MMP-13、TRACP-5b水平更低,TIMP-1、BALP、BGP水平更高（P<0.05）。结论：基于"经筋理论"针刀治疗早中期KOA患者,可有效减轻疼痛症状,提高临床治疗效果,可能与改善骨代谢指标和血清TIMP-1、MMP-3、MMP-13水平有关。     

高压氧联合高频rTMS对重型颅脑损伤后意识障碍患者促醒作用、神经电生理和脑损伤标志物的影响

摘要 目的：探讨高压氧联合高频重复经颅磁刺激（rTMS）对重型颅脑损伤后意识障碍（DOC）患者促醒作用、神经电生理和脑损伤标志物的影响。方法：选取2021年6月~2023年6月期间安徽中医药大学附属六安医院收治的的80例重型颅脑损伤后DOC患者。根据随机数字表法分为对照组（n=40,高压氧治疗）和观察组（n=40,高压氧联合高频rTMS治疗）。对比两组疗效、促醒作用、神经电生理和脑损伤标志物水平变化情况。结果：观察组的临床总有效率高于对照组（P<0.05）。两组治疗4周后修订的昏迷恢复量表（CRS-R）、格拉斯哥昏迷量表（GCS）评分升高,观察组高于对照组（P<0.05）。两组治疗4周后脑干听觉诱发电位（BAFP）、四肢体感诱发电位（SEP）、脑电图（EEG）分级有所改善,观察组改善效果优于对照组（P<0.05）。两组治疗4周后髓鞘碱蛋白（MBP）、神经元特异性烯醇化酶（NSE）、S100β蛋白下降,观察组低于对照组（P<0.05）。结论：高压氧联合高频rTMS治疗可有效促醒重型颅脑损伤后DOC患者,还可改善神经电生理活动,减轻脑损伤程度。     

1-Deoxy-d-galactonojirimycins with dansyl capped N-substituents as β-galactosidase inhibitors and potential probes for GM1 gangliosidosis affected cell lines

Two simple and reliably accessible intermediates, N-carboxypentyl- and N-aminohexyl-1-deoxy-d-galactonojirimycin were employed for the synthesis of a set of terminally N-dansyl substituted derivatives. Reaction of the terminal carboxylic acid of N-carboxypentyl-1-deoxy-d-galactonojirimycin with N-dansyl-1,6-diaminohexane provided the chain-extended fluorescent derivative. Employing bis(6-dansylaminohexyl)amine, the corresponding branched di-N-dansyl compound was obtained. Partially protected N-aminohexyl-1-deoxy-d-galactonojirimycin served as intermediate for two additional chain-extended fluorescent 1-deoxy-d-galactonojirimycin (1-DGJ) derivatives featuring terminal dansyl groups in the N-alkyl substituent. These new compounds are strong inhibitors of d-galactosidases and may serve as leads en route to pharmacological chaperones for GM1-gangliosidosis.     

Factors associated with maternal depressive symptoms among low-income,African American smokers enrolled in a secondhand smoke reduction programme

Introduction Maternal depressive symptoms increase the risk of poor maternal and child health outcomes, and are a primary barrier to health behaviour change. Social cognitive theory can guide our understanding of risk factors that may have an impact on maternal depressive symptoms. The aim of this paper was to understand the correlates of maternal depressive symptoms among low-income African American smokers completing a 16-week intervention trial to reduce young children''s second-hand smoke exposure (SHSe).Methods This study presents a secondary analysis of depression symptoms among 227 maternal smokers completing the SHSe-reduction trial. The end-of-treatment Center of Epidemiologic Studies Depression Scale (CES-D) score was used to assess depressive symptoms (dichotomised as 0 = score of < 16 and 1 = score of ≥ 16). Multivariate logistic regression analysis was used to test the one-way hypothesis that odds of significant depressive symptoms would be associated with greater total number of household smokers, greater number of paediatric sick visits, greater daily exposure of child to cigarette smoke by their mother, greater life-event stress, and lower social support, marital status, employment status and level of educational attainment.Results Number of household smokers (OR = 1.57, P = 0.049), social support (OR = 0.88, P < 0.001) and life-event stress (OR = 1.04, P = 0.001) predicted significant maternal depressive symptoms; all other variables were not significant predictors in the model.Conclusion Number of household smokers is a novel risk factor for understanding significant maternal depressive symptoms in the context of a childhood SHSe-reduction trial. Improving our understanding of the household-level social milieu in the context of SHSe-reduction interventions will assist in reducing the risk of maternal depressive symptoms.