黄病毒基因组非编码区的结构与功能研究进展

黄病毒科黄病毒属是由一组含单股正链RNA基因组的囊膜病毒组成,包括登革病毒、流行性乙型脑炎病毒、寨卡病毒、西尼罗病毒、黄热病病毒等,经由虫媒传播,可引起人类和动物的严重虫媒病毒病。黄病毒基因组由1个开放阅读框、5′非编码区和3′非编码区三部分组成。5′和3′非编码区含有病毒基因组复制所必需的启动元件;高度结构化的3′非编码区负责黄病毒亚基因组RNA的产生,从而有助于病毒逃避宿主免疫反应;此外3′非编码区还可作为疫苗研究的靶标。鉴于非编码区在黄病毒的蛋白翻译、基因组复制和免疫调节中发挥的重要作用,本文就黄病毒基因组非编码区的结构与功能最新研究进展作一简要综述。     

黄土高原林区生态系统服务价值与景观生态风险时空变化及其关联性——以子午岭区为例

当前,人们对自然景观提供的生态系统服务保护意识正在加强,但将生态系统服务价值纳入生态风险管控的研究和实践相对较少。本研究以子午岭区为例,基于2.5 km×2.5 km的评价小区,开展了1980、1990、2000、2010和2017年黄土高原林区——子午岭区景观格局类型格网化和重采样,定量评价了生态系统服务价值和景观生态风险,揭示了二者时空变化及其关联性。结果表明: 1980—2017年,子午岭区生态系统服务价值从其中心地带向外缘递减,总量由123.45亿元增长为126.33亿元;子午岭区景观生态风险从其中心地带向外缘递增,子午岭区的景观生态风险有所降低,生态状况总体好转。子午岭区生态系统服务价值与景观生态风险之间存在显著的负相关关系及明显的负向空间关联性;高价值-低风险区主要为子午岭林区,未来其生态系统服务价值可能会保持不变。     

云南高黎贡山地区蝴蝶群落多样性

位于滇西北的高黎贡山是全球生物多样性研究和保护的热点地区之一, 然而该地区昆虫多样性缺乏系统调查和总结。本研究聚焦蝴蝶类群, 考虑该区域高山峡谷特点, 结合海拔梯度、生境类型和季节变化, 采用样线法调查、分析蝴蝶物种多样性及群落结构变化。结果显示: 共观测记录到蝴蝶2,055只, 隶属于5科85属151种, 在历史记录上新增27种, 使该地区已知蝴蝶种类达488种; 其中蛱蝶科物种多样性最高, 灰蝶科次之, 凤蝶科最低。蝴蝶群落多样性分析结果表明: 中海拔1,000-2,000 m区域种类丰富、多样性指数最高; 低海拔区蝴蝶分布明显聚集, 并且与高海拔地区空间上分离, 少有重叠。该地区不同生境中蝴蝶的种类及数量差异也较大, 物种数及多样性指数在自然保护区最高、边缘交错带居中及农业种植区最低。此外, 蝴蝶的种类和数量也存在季节差异, 春季调查到的个体数少, 夏季观察到的物种数少, 两年秋季调查到的物种丰富度、多样性均高, 但存在季节内变化。总之, 高黎贡山地区不同海拔、生境、季节间和季节内蝴蝶群落组成有自身特点, 共存物种有限, 蝴蝶群落相似性低。综合评估分布于该地区的蝴蝶保护种类, 包括易危种17种、近危种50种, 有国家二级保护蝴蝶3种。本研究弄清了高黎贡山地区蝴蝶的物种本底, 并调查获得其多样性随海拔、生境和季节变化的模式, 为加强区域物种多样性监测、保护生物多样性提供了科学依据。     

黄河上游甘蒙柽柳生长对极端旱涝的响应

青藏高原黄河上游河岸带是典型的生态脆弱区, 然而近年来气候变暖加剧了该地极端旱涝事件的频繁发生, 高原河岸带生态脆弱区植被是否能够应对极端旱涝事件的干扰成为流域生态环境管理工作所关注的重点问题。为了研究黄河上游河岸林中主要树种对极端旱涝的响应, 该研究选取青海省同德县和兴海县3处河岸林中的47株甘蒙柽柳(Tamarix austromongolica), 分别从树干面向邻近山体一侧及与之垂直的一侧分别获取1根树轮样本, 分析其历史生长。通过对比两个方向上的生长速率判断甘蒙柽柳是否受到地质灾害影响从而将其划分为受伤组和对照组, 分析两组甘蒙柽柳在过去63年中径流极值年的抵抗力状况及两个方向的生长差异。研究发现, 甘蒙柽柳对干旱和洪涝均有着很强的抵抗力, 河岸带多样化的水分来源有助于甘蒙柽柳在极端干旱环境中较好地生长; 但洪涝伴随泥石流等地质灾害的频发使甘蒙柽柳面向山体侧面受到严重的生长抑制, 表现出显著的方向性差异, 从而影响甘蒙柽柳的形态。较长的创伤恢复期带来的遗留效应可能造成甘蒙柽柳对外界干扰的较高敏感性。研究黄河上游甘蒙柽柳生长对极端旱涝的响应, 将有助于评估生态脆弱区生态弹性过程, 同时为高原河岸带生态建设和恢复提供科学依据。     

Understanding the key characteristics and challenges of pine barrens restoration: insights from a Delphi survey of forest land managers and researchers

Pine barrens are open‐canopy ecological communities once prevalent on sandy soils across the northern Great Lakes Region of the United States and Canada, though fire suppression and plantation forestry have now reduced them to a few isolated areas. Efforts to restore pine barrens are underway on some public lands, but lack of knowledge on the social and ecological issues and challenges that affect these projects impedes fuller progress. As a precursor to designing a public preference survey for pine barrens restoration, we sought input from those with expert knowledge about pine barrens. Using a three‐round modified Delphi survey, forest land managers and researchers identified the key characteristics of pine barrens and important current and future management challenges. Key characteristics were related to fire, landscape structure, plant and animal species, soils, and social themes. Current and future challenges were related to landscape, invasive species, social, economic, climate change, and science themes. Four social issues (education, fire acceptance, fire risk, aesthetics) were rated among the top current challenges but none of them maintained prominence as future challenges. Potential explanations for this shift are that the experts felt these social concerns would be resolved in time or that other issues, such as development pressures and budgets for carrying out restoration, would become greater future challenges. Our approach can be used by managers and researchers to better understand the ecosystems they seek to restore and to communicate with public stakeholders about restoration efforts.     

Virological surveillance,molecular phylogeny,and evolutionary dynamics of hepatitis C virus subtypes 1a and 4a isolates in patients from Saudi Arabia

Hepatitis C virus (HCV) subtypes are pre-requisite to predict endemicity, epidemiology, clinical pathogenesis, diagnosis, and treatment of chronic hepatitis C infection. HCV genotypes 4 and 1 are the most prevalent in Saudi Arabia, however; less consensus data exist on circulating HCV subtypes in infected individuals. This study was aimed to demonstrate the virological surveillance, phylogenetic analysis, and evolutionary relationship of HCV genotypes 4 and 1 subtypes in the Saudi population with the rest of the world. Fifty-five clinical specimens from different parts of the country were analyzed based on 5′ untranslated region (5′ UTR) amplification, direct sequencing, and for molecular evolutionary genetic analysis. Pair-wise comparison and multiple sequence alignment were performed to determine the nucleotide conservation, nucleotide variation, and positional mutations within the sequenced isolates. The evolutionary relationship of sequenced HCV isolates with referenced HCV strains from the rest of the world was established by computing pairwise genetic distances and generating phylogenetic trees. Twelve new sequences were submitted to GenBank, NCBI database. The results revealed that HCV subtype 4a is more prevalent preceded by 1a in the Saudi population. Molecular phylogeny predicts the descendants’ relationship of subtype 4a isolates very close to Egyptian prototype HCV strains, while 1a isolates were homogeneous and clustering to the European and North American genetic lineages. The implications of this study highlight the importance of HCV subtyping as an indispensable tool to monitor the distribution of viral strains, to determine the risk factors of infection prevalence, and to investigate clinical differences of treatment outcomes among intergenotypic and intragenotypic isolates in the treated population.     

丙型肝炎病毒受体SR-BⅠ的研究进展

丙型肝炎病毒（HCV）是经血液传播而引起急、慢性肝炎的主要致病因子之一,是导致肝硬化、肝细胞癌等终末期肝病的主要原因。位于HCV包膜E2蛋白N端的第1高变区（HVR1）,是介导E2蛋白与B族I型清道夫受体（SR-BⅠ）结合及HCV感染细胞的关键肽段。研究表明,HCV可能利用了SR-BⅠ受体的某些生理功能入侵细胞,进行细胞-细胞间传播。因此,HVR1与SR-BⅠ相互作用的研究除了能深入了解HCV吸附和入侵细胞机制,同时也为治疗和预防HCV感染提供了新的靶点。     

Stochastic modelling of wall stresses in abdominal aortic aneurysms treated by a gene therapy

A stochastic mechanical model using the membrane theory was used to simulate the in vivo mechanical behaviour of abdominal aortic aneurysms (AAAs) in order to compute the wall stresses after stabilisation by gene therapy. For that, both length and diameter of AAAs rats were measured during their expansion. Four groups of animals, control and treated by an endovascular gene therapy during 3 or 28 days were included. The mechanical problem was solved analytically using the geometric parameters and assuming the shape of aneurysms by a ‘parabolic–exponential curve’. When compared to controls, stress variations in the wall of AAAs for treated arteries during 28 days decreased, while they were nearly constant at day 3. The measured geometric parameters of AAAs were then investigated using probability density functions (pdf) attributed to every random variable. Different trials were useful to define a reliable confidence region in which the probability to have a realisation is equal to 99%. The results demonstrated that the error in the estimation of the stresses can be greater than 28% when parameters uncertainties are not considered in the modelling. The relevance of the proposed approach for the study of AAA growth may be studied further and extended to other treatments aimed at stabilisation AAAs, using biotherapies and pharmacological approaches.     

Forest vascular plants as indicators of plant species richness: A data analysis of a flora atlas from northwestern Germany

Abstract

Our study had the objective to examine whether the number of forest vascular plants in a forest-poor region may be indicative of total plant species richness and of the number of threatened plant species. We also related forest plant species richness to geological and soil variables. The analysis was based on a regional flora atlas from the Weser-Elbe region in northwestern Germany including incidence data of species in a total of 1109 grid cells (each ca. 2.8 × 2.8 km²). All taxa were classified either as forest or non-forest species. Total species richness in the grid cells ranged from 65 to 597, with a mean value of 308. The number of forest species varied between 20 and 309 (mean 176). Grid cells with or without particular geological units differed in total and forest species richness, with those containing peatland and marshland being particularly species-poor. Indicator value analysis showed that both total and forest species richness in the grid cells were related to soil acidity and nitrogen in a hump-backed manner, with the highest number of species found at moderately low values for nitrogen and at intermediate values of pH. Forest species richness was highly positively correlated with the number of non-forest species and threatened non-forest species. Indicators for high species richness were primarily those species that are confined to closed semi-natural forests with a varied topography and relatively base- and nutrient-rich soils. Grid cells including historically ancient forest exhibited a higher species richness than grid cells lacking ancient forest, indicating the importance of a long habitat continuity for a high phytodiversity. The “habitat coincidence” of high species richness is best explained by similar responses of forest species and species of other habitats to the main environmental gradients. It is suggested that the regional patterns found for the Weser-Elbe region can be transferred also to other forest-poor regions in Central Europe.