Pattern analysis in Belgian limestone grasslands

Pattern analyses were made in several limestone grasslands of Belgium. Vegetation has been sampled in continuous transects. Monospecific patterns are defined by means of two non-parametric indices; multivariate analysis (reciprocal averaging) completed the analysis. The following kinds of pattern are described and explained: random, aggregate, clump, gap, stationary density variation, non-stationary density variation, gradient and many complex patterns. The multivariate analysis leads to a careful phytosociological study of the transects and to the definition of floristically homogeneous regions. Some particular points of pattern analysis, the problem of vegetation sampling and some perspectives are discussed.     

Brachiopod community paleoecology, paleobiogeography, and depositional topography of the Devonian Onondaga Limestone and correlative strata in eastern North America

The Emsian? through early Eifelian Onondaga Limestone of the Appalachian Basin was deposited in a topographic basin and on the carbonate platform which surrounded the basin on the west, north, and northeast. Onondaga strata thin from the platform into the basin. Two sedimentary cycles are present in the sub-Tioga Onondaga of eastern North America. The Edgecliff-Amherstburg represents an interval of transgression, in which epeiric seas spread over much of eastern North America. During the Nedrow-Lucas regression, the interior of the carbonate platform became restricted, resulting in the deposition of evaporites. The Moorehouse-Anderdon transgression continued through the deposition of the Tioga Bentonite, followed by the pre-Speeds-Dundee regression from the craton. Early Eifelian Appalachian Basin Onondaga brachiopod communities, arranged from nearshore to offshore, include the Atrypid-Megakozlowskiella, Atrypid-Levenea, Chonetid, Atlanticocoelia, Ambocoeliid, and Truncalosia Communities. The Onondaga-age Eastern Americas Realm is divided into the Appohimchi Province in the Appalachian Basin and the Michigan Basin-Hudson Bay Lowland Province in the Midwest. The provincial assignment of the James Bay region of Ontario is uncertain; the Eastern Townships of Quebec are near the boundaries both of the two provinces of the Eastern Americas Realm, and of the Eastern Americas Realm and the Old World Realm, the latter realm being probably in the Canadian Maritime Provinces.     

Development of species diversity in some mediterranean plant communities

Summary Plant communities in the Mediterranean region have been analyzed with the emphasis on community processes regulating diversity trends. We want to know how several mechanisms that contribute to the maintenance or to the modification of species diversity, act: (i) in different communities, during an ecological succession (from old fields to forests), and (ii) in forest communities throughout the year. Some of these mechanisms were investigated through difference in stratification, life-form, phenology, dispersal agent, and microenvironmental gradient.The paper censists of two parts. The first one deals with the relationship between structural and biological diversity in conjunction with succession stages leading to a Quereus pubescens forest. It is concluded that diversity, however it is measured, fluctuates during the succession: it increases initially (15 years after abandonment) and also in later stages when trees appear in the fields; it decreases after 20 years when Brachypodium phoenicoides dominates and in the latest stages of the succession studied. These trends may be interpreted in relation to the evolution of life form and dispersal agents spectra during the succession.The second part concerns community-structure and biological diversity in relation to the organization of two Quercus pubescens forests. It appears that the species richness in the understory of the forests, may be explained by: (i) the tendency of the modal height of species foliage distribution to oceupy different positions, (ii) the quasicomplete asynchronism in the major phenophases of the dominant species, (iii) different horizontal patterns of species distribution along a light gradient.These schemes are discussed in relation to ecological hypotheses on diversity in relation to succession, and to community organization.Nomenelature follows: P. Fournier (1961). Les quatre flores de France for the Gramineae and Liliaceae, Flora Europea for the other taxa.The support of the Délégation de la Recherche Scientifique et Technique through the grants N567, N633, N674 (Structure et dynamique des formations à Chène pubescent en zone bioclimatique méditerranéenne) is acknowledged. We thank J. Biondel, R. Bonhomme and M. Dueray for technical and scientific assistance. We are greatly indebted to Dr. E. van der Maarel for his helpful improvements of this text.     

Pigment architecture of the human telencephalic cortex

Summary Cortical lamination and parcellation of the retrosplenial region in the human brain is evaluated with the aid of frontal serial sections stained for nerve cells (15 m), myelin sheaths (100 m), and lipofuscin granules (800 m).For the most part, the retrosplenial region is buried in the depth of the sulcus corporis callosi covering the posterior parts of the cingulate gyrus. It lies between the supracallosal derivatives of the allocortex (fascia dentata, cornu ammonis, subiculum) and the mature parietal isocortex.The region can be subdivided into five areas. The transitory periallocortical Area ectosplenialis is followed by a richly differentiated proisocortical core displaying extremely externopyramidal, externoteniate, and astriate to unitostriate characteristics. The parvocellular core is averagely poor in pigment (Typus clarus) and rich in myelinated fibres (Typus dives). Minor structural differences allow for its subdivision into a lateral, an intermediate, and a medial retrosplenial field. The accompanying Area parasplenialis is adjacent to the equoteniate parietal isocortex. It is only weakly externopyramidal, externoteniate, and propebistriate. The already homotypical field shows an average pigmentation and myelin content. These structural features permit its classification as a belt area of the retrosplenial core.Supported by grants from the Deutsche Forschungsgemeinschaft     

Construction of an M13 histidine-transducing phage: a single-stranded cloning vehicle with one EcoRI site.

In order to create a ready source of single-stranded DNA for DNA sequence determination by the dideoxy chain-termination method, the promoter-proximal part of the histidine operon, the hisOGD region of Salmonella typhimurium, was cloned onto the single-stranded phage M13. Both orientations of the his DNA were cloned to supply DNA template for sequencing of each strand. Insertion was achieved at an HaeIII site in the intergenic region (IR) of M13, and a single EcoRI site was purposely regenerated at one boundary of the his DNA insert. Infected colonies, not plaques, were selected using the hisD gene as a selective marker. The single RI site and the hisD marker for auxotrophic selection represent improvements on the wild type M13 as a single-stranded vector for cloning other DNA.     

Correlation between the compact regions predicted by the Average Distance Map (ADM) and the biologically active sites in atrial natriuretic peptide

The prediction of the short-range compact regions of human atrial natriuretic peptide (a-hANP), one of the biologically active peptides, has been made by means of the Average Distance Map(ADM). We found out that the location of the predicted short-range compact regions is consistent with the structural units determined by the NMR analysis (Kobayashiet al., 1988). Furthermore, the short-range compact regions correspond well to the biologically active areas of atriopeptin (103–125)-amide (which is homologous peptide toa-hANP), detected by the glycine substitution technique (Konishiet al., 1987). The results suggest that a predicted short-range compact region can be regarded as a possible active site in a biologically active peptide.     

Repetitive DNA in and around translocation breakpoints of the Philadelphia chromosome

This paper describes systematic sequence studies of repetitive DNA in and around translocation breakpoints on chromosomes 9 and 22, which are involved in the formation of the Philadelphia chromosome in acute leukemias. In addition to Alu repeats described in previous studies, the breakpoint regions appear to contain many other repetitive elements, including a member of a new repetitive family (MER34) reported in this paper. Identification of these repeats broadens current studies on the possible involvement of repetitive DNA in this intensely studied chromosomal translocation.     

Distinct functions of maternal and somatic Pat1 protein paralogs

We previously identified Xenopus Pat1a (P100) as a member of the maternal CPEB RNP complex, whose components resemble those of P-(rocessing) bodies, and which is implicated in translational control in Xenopus oocytes. Database searches have identified Pat1a proteins in other vertebrates, as well as paralogous Pat1b proteins. Here we characterize Pat1 proteins, which have no readily discernable sequence features, in Xenopus oocytes, eggs, and early embryos and in human tissue culture cells. xPat1a and 1b have essentially mutually exclusive expression patterns in oogenesis and embryogenesis. xPat1a is degraded during meiotic maturation, via PEST-like regions, while xPat1b mRNA is translationally activated at GVBD by cytoplasmic polyadenylation. Pat1 proteins bind RNA in vitro, via a central domain, with a preference for G-rich sequences, including the NRAS 5′ UTR G-quadruplex-forming sequence. When tethered to reporter mRNA, both Pat proteins repress translation in oocytes. Indeed, both epitope-tagged proteins interact with the same components of the CPEB RNP complex, including CPEB, Xp54, eIF4E1b, Rap55B, and ePAB. However, examining endogenous protein interactions, we find that in oocytes only xPat1a is a bona fide component of the CPEB RNP, and that xPat1b resides in a separate large complex. In tissue culture cells, hPat1b localizes to P-bodies, while mPat1a-GFP is either found weakly in P-bodies or disperses P-bodies in a dominant-negative fashion. Altogether we conclude that Pat1a and Pat1b proteins have distinct functions, mediated in separate complexes. Pat1a is a translational repressor in oocytes in a CPEB-containing complex, and Pat1b is a component of P-bodies in somatic cells.