Ecological and methodological factors affecting detectability and population estimation in elusive species

Although mark-recapture methods are among the most powerful tools for monitoring wildlife populations, the secretive nature of some species requires a comprehensive understanding of the factors that affect capture probability to maximize accuracy and precision of population parameter estimates (e.g., population size and survivorship). Here, we used aquatic snakes as a case study in applying rigorous mark-recapture methods to estimate population parameters for secretive species. Specifically, we used intensive field sampling and robust design mark-recapture analyses in Program MARK to test specific hypotheses about ecological and methodological factors influencing detectability of two species of secretive aquatic snakes, the banded watersnake (Nerodia fasciata), and the black swamp snake (Seminatrix pygaea). We constructed a candidate set of a priori mark-recapture models incorporating various combinations of time- and sex-varying capture and recapture probabilities, behavioral responses to traps (i.e., trap-happiness or trap-shyness), and temporary emigration, and we ranked models for each species using Akaike's Information Criterion. For both banded watersnakes and black swamp snakes we found strong support for time-varying capture and recapture probabilities and strong trap-happy responses, factors that can bias population estimation if not accommodated in the models. We also found evidence of sex-dependent temporary emigration in black swamp snakes. Our study is among the first comprehensive assessments of factors affecting detectability in snakes and provides a framework for studies aimed at monitoring populations of other secretive species. © 2010 The Wildlife Society.     

Analyzing the H19- and T65-epitopes in 38 kd phosphorylated protein of Marek’s disease viruses and comparing chicken immunological reactions to viruses point-mutated in the epitopes

DNA sequencing analysis in 38 kd phosphorylated protein (pp38) ORF of Marek’s disease viruses (MDV) indicated that all tested 10 virulent strains with different pathotypes had ‘A’ at base #320 and glutamine at aa#107 while reacted with monoclonal antibody (Mab) H19 in indirect fluorescence antibody test (IFA). However, vaccine strain CVI988 had ‘G’ at base#320 and arginine at aa#107 instead, when it was negative in IFA with Mab H19. Some strains were also reactive with Mab T65 in IFA while there was ‘G’ at base #326 and glycine at aa#109, but the other strains, which had ‘A’ at base #326 and glutamic acid at aa#109, did not react with Mab T65. By comparison of CVI988 to its point mutants CVI/rpp38(AG) and CVI/rpp38(AA) with 1 or 2 base(s) changes at bases #320 and /or #326 of pp38 gene for their reactivity with Mab H19 and T65, it was confirmed that the glutamine at aa#107 and glycine at aa#109 were critical to epitopes H19 and T65 respectively. Immuno-reactions to MDV were compared in SPF chickens inoculated with cloned CVI988 and its mutant CVI/rpp38(AG). It was found that antibody responses to MDV in chickens inoculated with CVI/rpp38(AG) were delayed and significantly lower than that in chickens inoculated with the native CVI988. By differential comparison of antibody titers to different antigens, a third epitope specific to CVI988 and dependent on arginine at aa#107 was suggested to be responsible for the big difference in antibody responses induced by native CVI988 and its mutant.     

Sequential study of antigen persistence and concomitant inflammatory reactions relative to side-effects and growth of Atlantic salmon (Salmo salar L.) following intraperitoneal injection with oil-adjuvanted vaccines

The persistence of antigens at the injection site (area around pyloric caeca and spleen), concomitant inflammatory reaction and granuloma development were monitored at 3, 6 and 12 months following intraperitoneal injection with multivalent, oil-adjuvanted vaccines in Atlantic salmon. Parallel assessment of side-effect profiles and growth rate were also performed. Antigen persistence was examined by use of a monoclonal antibody that recognises Aeromonas salmonicida lipopolysaccharide in an immunohistochemical method for in situ identification of bacteria or bacterial fragments. The inflammatory reaction was monitored using standard histological techniques. The amount of persistent antigens and size of inflammation/adhesions were estimated semi-quantitatively. A steady decrease in the quantity of antigens at the injection site was observed from 3 to 12 months. Antigens were consistently found in inflamed tissues located in the pancreatic region. The size of inflammation increased during the first 6 months but declined thereafter. These findings suggest that persistent antigens at the injection site may act as inflammatory stimulants that induce and perpetuate the inflammatory reaction, eventually leading to adverse side-effects.     

In vitro rooting of juvenile and mature<Emphasis Type="Italic"> Acacia mangium</Emphasis> microcuttings with reference to leaf morphology as a phase change marker

Rooting capacity of microshoots derived from a mature clone of Acacia mangium Willd. and from its juvenile progeny was compared in different in vitro conditions and in relation to leaf morphology as a phase change marker. Rooting capacity of the mature clone appeared to depend a lot on rooting medium composition, in contrast to the juvenile plant material. On a SH/3 derived medium with 4 µM IAA, the rooting rates varied significantly according to microshoot morphology and light regime starting from day 14. Maintaining the microshoots for 3 weeks in total darkness prior to transfer to the standard 16-h photoperiod increased the rooting rates overall. Mature-like microshoots of juvenile origin rooted in much lower proportions than the juvenile-like ones under the 16-h photoperiod, whereas no difference in rooting rates between the two morphological types was observed after 3 weeks in total darkness. The results were totally opposite for the mature clone for which 3 weeks in darkness, in contrast to the 16-h photoperiod, induced morphology-related differences in rooting rates with higher scores for the juvenile type. This study shows that under certain conditions, A. mangium microshoots from mature origin but with juvenile morphology can root in vitro with similar success rates (70%) to microshoots from juvenile plant material. However, the inconsistencies observed between the two age classes of microshoots in relation to photoperiod refute the use of foliar morphology as a reliable marker of rooting ability in A. mangium, although these two traits are classically referred to as phase change indicators.     

The BOS loci of Arabidopsis are required for resistance to Botrytis cinerea infection

Three Botrytis-susceptible mutants bos2, bos3, and bos4 which define independent and novel genetic loci required for Arabidopsis resistance to Botrytis cinerea were isolated. The bos2 mutant is susceptible to B. cinerea but retains wild-type levels of resistance to other pathogens tested, indicative of a defect in a response pathway more specific to B. cinerea. The bos3 and bos4 mutants also show increased susceptibility to Alternaria brassicicola, another necrotrophic pathogen, suggesting a broader role for these loci in resistance. bos4 shows the broadest range of effects on resistance, being more susceptible to avirulent strain of Pseudomonas syringae pv. tomato. Interestingly, bos3 is more resistant than wild-type plants to virulent strains of the biotrophic pathogen Peronospora parasitica and the bacterial pathogen P. syringae pv. tomato. The Pathogenesis Related gene 1 (PR-1), a molecular marker of the salicylic acid (SA)-dependent resistance pathway, shows a wild-type pattern of expression in bos2, while in bos3 this gene was expressed at elevated levels, both constitutively and in response to pathogen challenge. In bos4 plants, PR-1 expression was reduced compared with wild type in response to B. cinerea and SA. In bos3, the mutant most susceptible to B. cinerea and with the highest expression of PR-1, removal of SA resulted in reduced PR-1 expression but no change to the B. cinerea response. Expression of the plant defensin gene PDF1-2 was generally lower in bos mutants compared with wild-type plants, with a particularly strong reduction in bos3. Production of the phytoalexin camalexin is another well-characterized plant defense response. The bos2 and bos4 mutants accumulate reduced levels of camalexin whereas bos3 accumulates significantly higher levels of camalexin than wild-type plants in response to B. cinerea. The BOS2, BOS3, and BOS4 loci may affect camalexin levels and responsiveness to ethylene and jasmonate. The three new mutants appear to mediate disease responses through mechanisms independent of the previously described BOS1 gene. Based on the differences in the phenotypes of the bos mutants, it appears that they affect different points in defense response pathways.     

Plant functional types and their ecological responses to salinization in saline grasslands, Northeastern China

Photosynthetic pathways (C₃, C₄, and CAM) and morphological functional types (e.g. shrubs, high perennial grasses, short perennial graminaceous plants, annual grasses, annual forbs, perennial forbs, halophytes, and hydrophytes) were identified for the species from salinity grasslands in Northeastern China, using the data from both stable carbon isotope ratios (¹³C) and from the references published between 1993 and 2002. 150 species, in 99 genera and 37 families, were found with C₃ photosynthesis, and most of these species are dominants [e.g. Leymus chinensis (Trin.) Tzvel., Calamagrostis epigeios (L.), Suaeda corniculata (C.A. Mey.) Bunge]. 40 species in 25 genera and 8 families were identified with C₄ photosynthesis [e.g. Chloris virgata Sw., Aeluropus littoralis (Gouan) Parlat] and 1 species with CAM photosynthesis. Gramineae is the leading family with C₄ photosynthesis (27 species), Chenopodiaceae ranks the second (5 species). The significant increase of C₄ proportions with intense salinity suggested this type plant is remarkable response to the grassland salinization in the region. 191 species were classified into eight morphological functional types and the changes of most of these types (e.g. PEF, HAL, and HPG) were consistent with habitats and vegetation dynamics in the saline grassland. My findings suggest that the photosynthetic pathways, combined with morphological functional types, are efficient means for studying the linkage between species and ecosystems in this type of saline grassland in Northeastern China.This revised version was published online in March 2005 with corrections to the page numbers.     

Fence effects on the behavioural responses of South American fur seals to tourist approaches

Animals that breed in coastal colonies, such as pinnipeds, usually attract tourism, which can negatively affect their resting and breeding behaviour if not managed properly. One strategy to reduce human disturbance is to set up fences, but little is known about their local effectiveness. Our purpose was to assess the behavioural responses of South American fur seals (Arctocephaalus australis) towards tourist approaches before and after the implementation of fences in Cabo Polonio colony (Uruguay). We found that human disturbance levels were similar between years and that the presence of a fence reduced (1) overall fur seal responses to tourists by 60%, (2) the most intense behavioural responses (threat, attack, leaving the colony) by more than half, (3) the responses to large tourist groups (>2 people), which were the most disturbing, (4) the responses to closer (<10 m) tourist approaches, and (5) the responses involving more intrusive tourist behaviours (running, shouting, hand waving). Overall, we showed that after the erection of the fence not only human–wildlife interactions were reduced but also the most stressful fur seal behavioural responses. Although further studies are necessary, our results suggest that the implementation of fences can be a simple and affordable means of minimising human disturbance effects on pinnipeds at local levels (e.g., within colonies), particularly if combined with other strategies (e.g., changes in tourist attitudes).     

Response properties of auditory activated cells in the occipital cortex of the blind mole rat: an electrophysiological study

Previous studies have demonstrated that despite its blindness, the subterranean blind mole rat (Spalax ehrenbergi) possesses a noticeable lateral geniculate nucleus and a typical cyto-architectural occipital cortex that are reciprocally connected. These two areas, as revealed by the metabolic tracer 2-deoxyglucose, are activated by auditory stimuli. Using single unit recordings, we show that about 57% of 325 cells located within the occipital cortex of anesthetized mole rats responded to at least one of the following auditory stimuli — white noise, pure tones, clicks, and amplitude modulated tones — with the latter two being the most effective. About 85% of cells driven by either contralateral or ipsilateral stimulation also responded to binaural stimulation; about 13% responded only to binaural stimulation; and 2% were driven exclusively by contralateral stimulation. Comparing responsiveness and response strength to these three modes of stimulation revealed a contralateral predominance. Mean latency (±SD) of ipsilateral and contralateral responses were 48.5±32.6 ms and 33.5±9.4 ms, respectively. Characteristic frequencies could be divided into two distinct subgroups ranging between 80 and 125 Hz and between 2,500 and 4,400 Hz, corresponding to the most intensive spectral components of the vibratory intraspecific communication signals and airborne vocalizations.Abbreviations BMF best modulation frequency - CF characteristic frequency - 2-DG 2-deoxyglucose - dLGN dorsal lateral geniculate nucleus - IC inferior colliculus - LGN lateral geniculate nucleus - OC occipital cortex - MTF modulation transfer function - SAM sinusoidally amplitude modulation - SC superior colliculus     

Characterization of sulfate transport in the hepatic endoplasmic reticulum

The transport of sulfate ion across the endoplasmic reticulum membrane was investigated using rapid filtration and light scattering assays. We found a protein-mediated, bi-directional, low-affinity, and high-capacity, facilitative sulfate transport in rat liver microsomes, which could be inhibited by the prototypical anion transport inhibitor, 4,4'-diisothiocyanatostilbene-2,2'-disulfonic acid. It was resistant to various phosphate transport inhibitors and was not influenced by high concentration of phosphate or pyrophosphate, which is contradictory to involvement of phosphate transporters. It was sensitive to S3483 that has been reported to inhibit the glucose 6-phosphate transporter (G6PT), but the weak competition between sulfate and glucose 6-phosphate did not confirm the participation of this transporter. Moreover, the comparison of the activity and S3483 sensitivity of sulfate transport in microsomes prepared from G6PT-overexpressing or wild type COS-7 cells did not show any significant difference. Our results indicate that sulfate fluxes in the endoplasmic reticulum are mediated by a novel, S3483-sensitive transport pathway(s).