Phylogenetic taxonomy of the marine mite genus Rhombognathides (Acari: Halacaridae: Rhombognathinae)

This study examined the impacts of the alien waterweed, water hyacinth, on the abundance and diversity of aquatic macroinvertebrates in the littoral areas of northern Lake Victoria in Uganda. The weed had undergone explosive growth on the lake causing serious disruption to people, the economy and the ecosystem. This study was confined to impact of the weed in the littoral zone, not to the large floating mats of vegetation which float across the lake and clog large areas of shoreline.The littoral area studied comprised of fringing mats of Eichhornia crassipes (Mart) Solms (water hyacinth) to the lakeward of Cyperus papyrus; water hyacinth mats undergoing colonisation by Vossia cuspidata (Roxb.) Griff.; and a typical Cyperus papyrus L shore with no outer floating mat of water hyacinth. Numerical abundance (Nos. m^–2) and diversity (No. of taxa) of macroinvertebrates recovered from pure Eichhornia crassipes and the Eichhornia-Vossia succession increased from the fringe of the Cyperus papyrus towards the open water. In the typical Cyperus papyrus fringe, in the absence of water hyacinth, abundance was highest at the papyrus/open water interface and dropped off sharply towards open water. The Shannon–Weaver diversity index (H) of macroinvertebrates decreased progressively from pure Eichhornia crassipes stands, to Vossia/Eichhornia beds and Cyperus papyrus stands (H=0.56, 0.54 and 0.34, respectively) but were not significantly different. Dissolved oxygen decreased from open water into vegetation where it approached anoxia. Water hyacinth appeared to enhance the abundance and diversity of aquatic macroinvertebrates at the interface with the open water. The impoverished abundance and diversity of the macroinvertebrates deeper into the vegetation mats suggested negative environmental impacts of the water hyacinth when the fringe is too wide. Further research is recommended to establish the optimum width of the fringe of stationery water hyacinth that promotes maximum abundance and diversity of aquatic macroinvertebrates and, possibly, of other aquatic life. Since this study in 1997, there has been a dramatic decrease in Eichhornia infestations and by June 2000 it appeared largely to exist only as fringing vegetation in bays and inlets.     

Estimation in independent observer line transect surveys for clustered populations

This paper introduces a framework for animal abundance estimation in independent observer line transect surveys of clustered populations. The framework generalizes an approach given in Chen (1999, Environmental and Ecological Statistics 6, in press) to accommodate heterogeneity in detection caused by cluster size and other covariates. Both parametric and nonparametric estimators for the local effective search widths, given the covariates, can be derived from the framework. A nonparametric estimator based on conditional kernel density estimation is proposed and studied owing to its flexibility in modeling the detection functions. A real data set on harbor porpoise in the North Sea is analyzed.     

Comparing expression level-dependent features in codon usage with protein abundance: an analysis of 'predictive proteomics'

Synonymous codon usage is a commonly used means for estimating gene expression levels of Escherichia coli genes and has also been used for predicting highly expressed genes for a number of prokaryotic genomes. By comparison of expression level-dependent features in codon usage with protein abundance data from two proteome studies of exponentially growing E. coli and Bacillus subtilis cells, we try to evaluate whether the implicit assumption of this approach can be confirmed with experimental data. Log-odds ratio scores are used to model differences in codon usage between highly expressed genes and genomic average. Using these, the strength and significance of expression level-dependent features in codon usage were determined for the genes of the Escherichia coli, Bacillus subtilis and Haemophilus influenzae genomes. The comparison of codon usage features with protein abundance data confirmed a relationship between these to be present, although exceptions to this, possibly related to functional context, were found. For species with expression level-dependent features in their codon usage, the applied methodology could be used to improve in silico simulations of the outcome of two-dimensional gel electrophoretic experiments.     

Effects of Eutrophication on Young-of-the-year Freshwater Fish Communities in Coastal Areas of the Baltic

Abundance, growth, habitat and food choice of young-of-the-year (Y-O-Y) freshwater fishes were investigated in a gradient of eutrophication in a Baltic inlet. Secchi-disc depth decreased from 3 to 0.5m along the gradient with an accompanying reduction in submerged vegetation coverage. There were positive trends in Y-O-Y abundance with increasing turbidity for cyprinids, pikeperch, ruffe and smelt, and a negative trend for perch, leading to a shift from a perch dominated community in the reference area to a cyprinid dominated in the eutrophic area. The species composition of adult fishes resembled the Y-O-Y species community, indicating that community structure was determined already during early juvenile interval. Perch and cyprinid Y-O-Y preferred areas with submerged macrophytes while pikeperch and smelt were found more frequently in open waters. Perch Y-O-Y growth was reduced in eutrophic areas compared to references, especially in the size range where they change from foraging on zooplankton to benthic organisms. The deterioration of visual conditions caused by high turbidity is suggested to be negative for feeding of perch especially in deeper water. There was no evident growth reduction for pikeperch, which may be explained by a visual physiology well adapted to turbid conditions. The combined effects of turbidity and competition for food resources on growth and survival in eutrophic waters are discussed.     

Measuring the number of co-dominants in ecological communities

We suggest a concept that allows the objective determination of the number of co-dominants in a community. We define co-dominants as a subset of species that are more abundant and more uniformly distributed than other species in a given sample. We compare the sample with a model community and use Simpsons diversity index to estimate the apparent number of co-dominants. Dominant species determined in this way are responsible for 70–90% of the total measure of abundance in the sample. The statistical significance of the apparent number of co-dominants may be assessed by a randomization test.     

First Field Studies of an Endangered South African seahorse, Hippocampus capensis

South Africa's endemic Knysna seahorse, Hippocampus capensis Boulenger 1900, is a rare example of a marine fish listed as Endangered by the IUCN because of its limited range and habitat vulnerability. It is restricted to four estuaries on the southern coast of South Africa. This study reports on its biology in the Knysna and Swartvlei estuaries, both of which are experiencing heavy coastal development. We found that H. capensis was distributed heterogeneously throughout the Knysna Estuary, with a mean density of 0.0089m^–2 and an estimated total population of 89000 seahorses (95% confidence interval: 30000–148000). H. capensis was found most frequently in low density vegetation stands (20% cover) and grasping Zostera capensis. Seahorse density was not otherwise correlated with habitat type or depth. The size of the area in which any particular seahorse was resighted did not differ between males and females. Adult sex ratios were skewed in most transects, with more males than females, but were even on a 10 by 10m focal study grid. Only three juveniles were sighted during the study. Both sexes were reproductively active but no greeting or courtship behaviours were observed. Males on the focal study grid were longer than females, and had shorter heads and longer tails, but were similar in colouration and skin filamentation. The level of threat to H. capensis and our limited knowledge of its biology mean that further scientific study is urgently needed to assist in developing sound management practices.     

Organic matter transformations and soil fertility in a treed pasture in semiarid NE Brazil

Planted silvo-pastoral systems are formed by sparing selected native trees when land is cleared for pasture establishment, or by planting selected species – often known agroforestry species – into the establishing pasture. Isolated trees within pastures and savannas are often associated with `resource islands', characterized by higher fertility and organic matter levels under the tree canopies. We here examine the processes underlying the differences in fertility and organic matter in a buffel grass (Cenchrus ciliaris L.) pasture that contained two tree species (Ziziphus joazeiro Mart., Spondias tuberosa Arruda Cam.) preserved from the native thorn forest and a planted agroforestry species (Prospois juliflora Swartz D.C). The objective is to distinguish effects of soil variability from those induced by the presence of trees or the planting of pasture. The ¹³C signatures of the original (largely C3) vegetation, the preserved and planted trees, and the planted C4 grass were used to distinguish the provenance of organic matter in the top soil (0–15 cm). This allowed the conclusion that all trees maintained C3 derived C at the original thorn forest level, while lower levels under pasture were due to mineralisation of organic matter. The net rates of forest-derived C loss under pasture varied with soil type amounting to between 25 and 50% in 13 years after pasture establishment. Only on Alfisol, C inputs from the pasture compensated for the C3-C losses. Analysis of organic and inorganic P fractions indicated Z. joazeiro and P. juliflora enriched the soil under their canopy with P, whereas S. tuberosa had no positive effect on fertility. A combination of ANOVA and spatial analysis and mapping was used to show vegetation effects.     

How fruit abundance affects the chimpanzee party size: a comparison between four study sites

We examined the relationship between fruit abundance and chimpanzee (Pan troglodytes) party size by comparing data from four study sites: the Kalinzu Forest Reserve, Uganda, the Djinji Camp and Guga Camp in the Ndoki Forest, Congo, and Kahuzi-Biega National Park, Democratic Republic of Congo. Although the difference in the fruit abundance between the sites was responsible for the difference in the party size between the sites, the seasonal changes in fruit abundance did not explain the changes in the party size in each study site. Across the four study sites, there were significant correlations of the mean and minimum of monthly party size with the mean of monthly fruiting-tree density, and a significant correlation of the maximum of monthly party sizes with the minimum of monthly fruiting-tree density. We proposed a hypothesis that (1) the monthly fruit abundance affects the monthly party size in the sites where the fruit availability is as low as to limit the party size during a major part of a year, while (2) the party size does not increase with the increase in the monthly fruit abundance, but is affected by other social factors, in the sites where the minimum of monthly fruit abundance is high enough for chimpanzees to form parties of an adequate size. Electronic Publication