Assessing California's bar-built estuaries using the California Rapid Assessment Method

Bar-built estuaries are generally found at the mouths of smaller watersheds with seasonal precipitation, episodic streamflow and seasonal swell dynamics. Low streamflows and constructive wave forces form a sand bar at the mouth isolating the stream from the ocean, creating a ponded lagoon, and inundating the surrounding marsh plain. Bar-built estuaries are wide spread in California comprising over 50 percent of California's more than 500 estuaries. By connecting terrestrial, freshwater, and marine realms bar-built estuaries are complex and dynamic providing great habitat and ecosystem services. California has suffered some of the highest losses of wetland habitats, and the wetland habitats of bar-built estuaries continue to be threatened by further development, pollution, and climate related changes including diminished streamflows and sea level rise. Given this loss and threat we developed a California Rapid Assessment Method (CRAM) to assess the condition of California's bar-built estuaries. CRAM uses visual indicators to accurately reflect current wetland condition with regards to buffer habitat, hydrology, physical complexity, plant diversity and structure, and landscape influences. Here we validate this method by comparing results of CRAM for bar-built estuaries to other accepted measures of wetland condition that we simultaneously collected with CRAM including vegetative surveys, water nutrient levels, and GIS landscape scale measures of stress for 32 sites throughout California. CRAM correlated well with each of these three independent methods of assessing condition. Notably, the Environmental Monitoring and Assessment Program (EMAP) number of natives metric significantly correlated with CRAM Index and all Attribute scores. The strong correlations of CRAM to nutrient levels is particularly important considering the documentation of the negative impact of nutrients on fish populations, the use of bar-built estuaries by juveniles of commercially important species, and the nursery role of bar-built estuaries for maintaining imperiled populations of species such as steelhead. GIS measured percent impervious, percent agriculture, and percent dams all correlated well with expected CRAM Attribute scores at appropriate watershed scales relative to the area of inference for each CRAM metric. Further, CRAM for bar-built estuaries works well throughout California's diversity of environmental conditions and regardless of geography, timing, or whether the bar was open or closed during the survey. We hope that the availability of CRAM combined with available data repositories will enable local, state, and federal decision makers to better manage, restore, and conserve valuable bar-built estuaries in the face of continual threats like development, drought, and sea level rise.     

Impacts of forest cover change on ecosystem services in high Andean mountains

Land conversion affects the delivery of ecosystem goods and services. In this study, we used a 50 years time series of land cover maps to assess the potential impacts of forest cover changes on ecosystem services. A multi-source data integration strategy was followed to reduce inconsistencies in land cover change detection that result from the comparison of historical aerial photographs and satellite images. Our forest cover change analysis highlighted a shift from net deforestation to net reforestation in the early 1990s, consistent with the forest transition theory. When taking the nature of forest cover changes into account, our data show that the areal increase of the forested area was not associated with an improvement in ecological conditions. The overall capacity of the landscape to deliver ecosystem services dropped steadily by 16% over the 50 years’ study period. Conversion of native forests to agricultural land was associated with the strongest decline in ecosystem services. Conversion of natural grasslands into pine plantations mostly led to negative and probably irreversible impacts on the delivery of ecosystem services. Conversion of degraded agricultural lands into pine plantations led to an improvement in ecological conditions. An effective spatial targeting of forestation programs has the potential to maximize the environmental benefits that forest plantations may offer while minimizing their environmental harm.     

Characterizing coal and mineral mines as a regional source of stress to stream fish assemblages

Mining impacts on stream systems have historically been studied over small spatial scales, yet investigations over large areas may be useful for characterizing mining as a regional source of stress to stream fishes. The associations between co-occurring stream fish assemblages and densities of various “classes” of mining occurring in the same catchments were tested using threshold analysis. Threshold analysis identifies the point at which fish assemblages change substantially from best available habitat conditions with increasing disturbance. As this occurred over large regions, species comprising fish assemblages were represented by various functional traits as well as other measures of interest to management (characterizing reproductive ecology and life history, habitat preferences, trophic ecology, assemblage diversity and evenness, tolerance to anthropogenic disturbance and state-recognized game species). We used two threshold detection methods: change-point analysis with indicator analysis and piecewise linear regression. We accepted only those thresholds that were highly statistically significant (p ≤ 0.01) for both techniques and overlapped within ≤5% error. We found consistent, wedge-shaped declines in multiple fish metrics with increasing levels of mining in catchments, suggesting mines are a regional source of disturbance. Threshold responses were consistent across the three ecoregions occurring at low mine densities. For 47.2% of the significant thresholds, a density of only ≤0.01 mines/km² caused a threshold response. In fact, at least 25% of streams in each of our three study ecoregions have mine densities in their catchments with the potential to affect fish assemblages. Compared to other anthropogenic impacts assessed over large areas (agriculture, impervious surface or urban land use), mining had a more pronounced and consistent impact on fish assemblages.     

Extrapolation of random forest models shows scale adaptation in egret colony site selection against landscape complexity

Availability of certain habitats or landscape configurations can cause differential habitat selection in animal species. Landscape complexity can affect foraging scales, home ranges and movement, but its effect on habitat selection is not well documented. We aimed to examine differences in colony site selection of herons and egrets in different regions. We studied whether landscape complexities could affect their scale of selection and habitat preferences. We used colony distribution data and land-use maps for two neighboring regions, Ibaraki and Chiba prefectures in Japan, to create random forest models for analyzing habitat preferences and important scales of selection. We did cross-validation of the models, adjusted for its respective region's land-use maps with changing scales. The scales that best explained colony distribution were 1-, 4-, 10- and 15-km in the Ibaraki region, and 1- and 10-km in the Chiba region. Evergreen forest was the most important variable for Ibaraki at 4-km and for the Chiba at 1-km. The importance of other variables differed for other models. Cross-validation showed that herons and egrets had the same habitat preferences at a 4-km scale in Ibaraki and at a 1-km scale in Chiba. The scale of selection was reduced in Chiba, where the main foraging resources for herons and egrets was more complex. Differences in landscape complexities did not affect habitat preferences but resulted in differences in the scale of selection. Habitat selection models created at the landscape level can be useful to study behavioral aspects difficult to describe with direct observation in detail.     

低盐度围隔调控环境浮游纤毛虫群落结构与动态

为了解施肥与水质调控对养殖水体中原生动物的影响,2008年6-10月,对低盐度围隔调控环境中浮游纤毛虫种群结构及动态变化进行了研究.通过活体观察和标本固定染色法共检测到浮游纤毛虫48种,分属于3纲11目37属,其中寡毛目纤毛虫种类8种;缘毛目7种,腹毛目和盾纤目均为6种;优势种多为富营养化水体中或耐污性种类,如圆筒状拟铃壳虫(Tintinnopsis cylindrata)、球形急游虫(Stranbidium globosaneum)、海洋帆口虫(Pleuronema marinum)、蚤状中缢虫(Mesodinium pulex)、毛板壳虫(Coleps hirtus)、瓜形膜袋虫(Cyclidium citrullus)等.围隔不同施肥处理,对纤毛虫的群落组成与动态变化影响显著,试验期间,围隔中纤毛虫种类平均值最高为9种,最低为4种;密度平均值最高为112.30cells·ml-1,最低为19.50 cells·ml-1;10个围隔中纤毛虫种类平均分别为6～7种,密度平均为52.56 cells·ml-1;施有机肥培藻的围隔,优势种始终是嗜污性较强的纤毛虫.纤毛虫动态与浮游藻类动态变化密切相关,二者的密度变化特点为前期和后期低,中期较高;但多样性的变化规律相反,纤毛虫的多样性表现为前期和后期低,中期较高,藻类的多样性表现为前期和后期高,中期较低.     

泽陆蛙(Fejervarya limnocharis)两性异形的个体发育和雌体繁殖

2010年3月下旬-7月上旬于浙江富阳市农田采集680只泽陆蛙(Fejervarya limnocharis),研究了泽陆蛙成体和幼体的个体大小和局部形态特征的两性异形;通过解剖雌体获得窝卵数、测量抱对个体获得形态数据,研究了雌体大小与生育力关系以及抱对两性个体体形大小的相关性.结果表明:捕获个体中,雌性和雄性成体的最小体长分别为33mm和30 mm;雄性成体个体数显著超过雌性成体,两性幼体个体数无显著差异;两性成体头部大小、四肢长随体长呈同速增长,眼径和体重随体长呈异速增长,两性幼体所有被检形态特征均随体长呈同速增长;雌性成体平均体长显著大干雄性成体,去除体长差异的影响后发现,除眼径无显著的两性差异外,其余被检形态特征均为雌性大于雄性;幼体除雌性体重大于雄性外,其余被检形态特征均无两性差异;窝卵数与雌体大小(体长和体重)呈显著的正相关;两性抱对个体的体长无显著相关性;泽陆蛙雄性成体体形小于雌性成体的个体大小两性异形模式可能决定于驱使雄性向较大体形发展的进化驱动力相对较弱,雌性增大体形可增加繁殖输出,故向较大体形发展的进化驱动力相对较强;除体重外,其余被检形态特征的两性异形均形成于性成熟之后.     

Change from pre‐settlement to present‐day forest composition reconstructed from early land survey records in eastern Québec,Canada

Questions: What was the tree species composition of forests prior to European settlement at the northern hardwood range limit in eastern Québec, Canada? What role did human activities play in the changes in forest composition in this region? Location: Northern range limit of northern hardwoods in the Lower St. Lawrence region of eastern Québec, Canada. Methods: We used early land survey records (1846–1949) of public lands to reconstruct pre‐settlement forest composition. The data consist of ranked tree species enumerations at points or for segments along surveyed lines, with enumerations of forest cover types and notes concerning disturbances. An original procedure was developed to weigh and combine these differing data types (line versus point observations; taxa versus cover enumerations). Change to present‐day forest composition was evaluated by comparing survey records with forest decadal surveys conducted by the government of Québec over the last 30 years (1980–2009). Results: Pre‐settlement dominance of conifers was strong and uniform across the study area, whereas dominance of maple and birches was patchy. Cedar and spruce were less likely to dominate with increasing altitude, whereas maple displayed the reverse trend. Frequency of disturbances, especially logging and fire, increased greatly after 1900. Comparison of survey records and modern plots showed general increases for maple (mentioned frequency increased by 39%), poplar (36%) and paper birch (31%). Considering only taxa ranked first by surveyors, cedar displayed the largest decrease (19%), whereas poplar (15%) and maple (9%) increased significantly. Conclusions: These changes in forest composition can be principally attributed to clear‐cutting and colonization fire disturbances throughout the 20th century, and mostly reflected the propensity of taxa to expand (maples/aspen) or decline (cedar/spruce) with increased disturbance frequency. Québec's land survey archives provide an additional data source to reconstruct and validate our knowledge of North America's pre‐settlement temperate and sub‐boreal forests.     

Data standards, sense and stability: Scratchpads, the ICZN and ZooBank

The International Commission of Zoological Nomenclature has used the Scratchpads platform (currently being developed and maintained by ViBRANT) as the foundation for its redesigned website and as a platform for engaging with its users. The existing Scratchpad tools, with extensions to provide additional functions, have allowed for a major transformation in presentation of linked nomenclatural tools. Continued development of the new website will act as a springboard for the ICZN to participate more fully in the wider community of biodiversity informatics.     

Does landscape composition alter the spatiotemporal distribution of the pine processionary moth in a pine plantation forest?

Landscape composition and physiognomy affect community structure and species distribution across space and time. The pine processionary moth (PPM) (Thaumetopoea pityocampa Den. & Schiff., Lepidoptera, Notodontidae) is a common pine defoliator throughout southern Europe and Mediterranean countries. We surveyed the spatiotemporal distribution of the PPM in a pine plantation forest in southwestern France and used the density of the winter nests as a proxy for population density. The study spanned 4 years (2005–2008) and showed a high temporal variability in nest density. We found a strong edge effect with nest densities at stand edges more than twice as large as within-stand densities. At the landscape scale, the spatial distribution of the moth exhibited a significant spatial autocorrelation in 3 out of 4 years of our study. The spatial scales of the autocorrelation ranged from ca. 2 km to more than 22 km. We found a positive correlation between spatial distributions corresponding to certain sampling years, but the relationship was not systematic. Landscape configuration appeared to be an important driver of the PPM spatial pattern. Bivariate Moran’s I correlograms showed that patch richness density as well as the percentage of local landscape covered by various land uses were correlated with population density. The study showed that accounting for landscape characteristics may be important in order to understand forest insect pest distribution, even in cases where the host species is abundant and homogeneously distributed throughout the study area, e.g., pure plantation forests.     

Road impacts a tipping point for wildlife populations in threatened landscapes

The conservation of wildlife populations living adjacent to roads is gaining international recognition as a worldwide concern. Populations living in road-impacted environments are influenced by spatial parameters including the amount and arrangement of suitable habitat. Similarly, heterogeneity in threatening processes can act at a variety of spatial scales and be crucial in affecting population persistence. Common wombats (Vombatus ursinus) are considered both widespread and abundant throughout their eastern Australian continental distribution. They nevertheless face many threats, primarily human induced. As well as impacts from disease and predation by introduced species, high roadside fatality rates on many rural roads are frequently reported. We parameterized a model for common wombat population viability analysis within a 750-km² area of the northwestern corner of Kosciuszko National Park in New South Wales, Australia, and tested its sensitivity to changes in the values of basic parameters. We then assessed the relative efficiency of various mitigation measures by examining the combined impact from roads, disease and predation on wombat subpopulation persistence in the area. We constructed a stage-structured and spatially explicit model incorporating estimates of survival and fecundity parameters for each of the identified subpopulations using RAMAS GIS. Estimates of current threatening processes suggest mitigating road-kill is the most effective management solution. Results highlight the importance of recognizing the interplay between various threats and how their combination has the capacity to drive local depletion events.