L’Art rupestre d’Alta,Norvège. Art et conscience

Located in northern Scandinavia, rock art sites from Alta are the silent witness of ancient people. Considering landscape, surfaces and engravings gives the opportunity to understand the relation of pictures to their context. Simultaneous understanding of both rock surface and picture offer to reach a graphical discourse. On the other hand mythology gives a new perspective to engravings and integrates them into a global values’ system. Power over representation and the rise of sacred feeling produce by those engravings create a special space closer to a higher reality. In that more than natural space respect to precise rules is of the first importance. By a metaphysic's knowledge, the shaman insures good fortune and well-being to the entire group. This paper offers to consider those different aspects and to shed light on their importance.     

TrioMDR: Detecting SNP interactions in trio families with model-based multifactor dimensionality reduction

Single nucleotide polymorphism (SNP) interactions can explain the missing heritability of common complex diseases. Many interaction detection methods have been proposed in genome-wide association studies, and they can be divided into two types: population-based and family-based. Compared with population-based methods, family-based methods are robust vs. population stratification. Several family-based methods have been proposed, among which Multifactor Dimensionality Reduction (MDR)-based methods are popular and powerful. However, current MDR-based methods suffer from heavy computational burden. Furthermore, they do not allow for main effect adjustment. In this work we develop a two-stage model-based MDR approach (TrioMDR) to detect multi-locus interaction in trio families (i.e., two parents and one affected child). TrioMDR combines the MDR framework with logistic regression models to check interactions, so TrioMDR can adjust main effects. In addition, unlike consuming permutation procedures used in traditional MDR-based methods, TrioMDR utilizes a simple semi-parameter P-values correction procedure to control type I error rate, this procedure only uses a few permutations to achieve the significance of a multi-locus model and significantly speeds up TrioMDR. We performed extensive experiments on simulated data to compare the type I error and power of TrioMDR under different scenarios. The results demonstrate that TrioMDR is fast and more powerful in general than some recently proposed methods for interaction detection in trios. The R codes of TrioMDR are available at: https://github.com/TrioMDR/TrioMDR.     

祁连山国家公园青海片区雪豹栖息地适宜性评价

雪豹是全球生物多样性保护的旗舰物种,精准评估雪豹栖息地质量可为其种群保护提供科学参考。本文选取地形、气候、植被类型和人为干扰等环境因子,采用景观连接度和MaxEnt模型两种方法,对祁连山国家公园青海片区雪豹栖息地质量进行评价。结果表明：高适宜栖息地主要分布在研究区的西部和中部,适宜面积占青海片区总面积的71.8%～77.5%,两种方法预测的适宜栖息地重叠区为8 979.1 km2,占青海片区总面积的56.7%;39.8%～43.3%的适宜栖息地分布在一般控制区,56.7%～60.2%的适宜栖息地分布在核心保护区;疏勒河源区适宜栖息地面积最多,石羊河源区适宜栖息地面积最少,黑河源区适宜栖息地面积占比最高,约为77.1%～91.8%。适宜栖息地面积整体呈现自东向西递增的趋势。一般控制区分布有较大面积的雪豹栖息地,人类活动将是一般控制区雪豹栖息地的潜在威胁。本研究对优化雪豹就地保护措施提供科学借鉴与参考。     

Vegetation responses to landscape structure at multiple scales across a Northern Wisconsin,USA, pine barrens landscape

Increasing awareness of the importance of scale and landscape structure to landscape processes and concern about loss of biodiversity has resulted in efforts to understand patterns of biodiversity across multiple scales. We examined plant species distributions and their relationships to landscape structure at varying spatial scales across a pine barrens landscape in northern Wisconsin, U.S.A. We recorded plant species cover in 1×1 m plots every 5 m along a 3575 m transect, along with variables describing macro- and micro-landscape structure. A total of 139 understory plant species were recorded. The distributions of many species appeared to be strongly associated with landscape structural features, such as distinct management patches and roads. TWINSPAN and detrended correspondence analysis (DCA) identified three groups of species that overlapped extensively in the ordination, possibly reflecting the relatively homogeneous nature of disturbance in the pine barrens landscape. Distribution of understory plants did not reflect all of the patch types we identified along the transect; plot ordination and classification resulted in three to five plot groups that differed in niche breadth. Wavelet transforms showed varying relationships between landscape features and plant diversity indices (Shannon–Weiner, Simpson's Dominance) at different resolutions. Wavelet variances indicated that patterns of Shannon diversity were dominated by coarse resolutions ranging from 900–1500 m, which may have been related to topography. Patterns of Simpson's Dominance were dominated by 700 m resolution, possibly associated with canopy cover. However, a strong correspondence between overstory patch type and diversity was found for several patch types at ranges of scales that varied by patch type. Effects of linear features such as roads were apparent in the wavelet transforms at resolutions of about 5–1000 m, suggesting roads may have an important impact on plant diversity at landscape scales. At broad scales, landscape context appeared more important to diversity than individual patches, suggesting that changes in structure at fine resolutions could alter overall diversity characteristics of the landscape. Therefore, a hierarchical perspective is necessary to recognize potential large-scale change resulting from small-scale activities.     

Mapping the spatial distribution of plant diversity indices in a tropical forest using multi-spectral satellite image classification and field measurements

The relationships among alpha and beta diversity indices, computed from 141 randomly sampled quadrats, and the vegetation classes obtained by multi-spectral satellite image classification, were used as a strategy for mapping plant diversity in a tropical landscape mosaic. A relatively high accuracy of the land cover map was revealed by the overall accuracy assessment and the Cohen's Kappa statistic. Species accumulation models were used to evaluate how representative the sample size was the different vegetation types. A standard one-way, between-subjects ANOVA confirmed a significant reduction of the within-class variance of plant diversity with respect to their total variance across the landscape. Computed uniformity indices, to assess the internal uniformity of vegetation classes on the diversity indices, confirmed the goodness of the mapped classes in stratifying variability of plant diversity. This allowed for the use of the mapped classes as spatial interpolators of plant diversity values for estimation and up-scaling purposes. Finally, it was revealed that the plant diversity of the landscape depends, to a large extent, on the diversity contained in the most mature forest class, which is also the most diverse community in the studied area. High and moderate beta diversity values between mature forests and both the secondary associations and the first stages of succession, respectively, indicated that there is a significant contribution to the diversity of the landscape by those vegetation classes.     

Host density influences parasitism of the armyworm Pseudaletia unipuncta in agricultural landscapes

Several studies have shown positive responses of parasitism to either host density or landscape complexity. However, no experiments have manipulated host density in landscapes of differing complexity. Here we report the results of a field experiment conducted to determine how host density and agricultural landscape structure jointly affect parasitism and parasitoid diversity of Pseudaletia unipuncta (Haworth) (Lepidoptera: Noctuidae). Parasitism was assessed by experimentally adding P. unipuncta sentinel larvae at low (1 larvae/plant) and high (3 larvae/plant) densities to detect parasitism in commercial cornfields located in a complex and a simple agricultural landscape. The braconid wasps Glyptapanteles militaris (Walsh) and Meteorus spp. accounted for 98.4% of the observed parasitism. Landscape structure did not influence parasitism (80.2% on average) and contrary to expectations, showed a trend towards increased parasitoid richness and diversity in the simple landscape. Increasing host density revealed a trend of increasing parasitoid richness and diversity, and differentially affected parasitism at the parasitoid specific level. G. militaris parasitized a significantly greater proportion of hosts at low host density, while the opposite occurred for Meteorus spp. (primarily M. communis). These offsetting responses of parasitoids resulted in the lack of an overall host density effect on parasitism. The differential response of these parasitoids to host density is discussed in relation to differences in morphological and life history characteristics. Our results suggest that the specific composition of parasitoid assemblages could significantly alter parasitism at different host densities independently of landscape structural complexity.

Zusammenfassung

Verschiedene Untersuchungen haben gezeigt, dass Parasitismus entweder auf die Wirtsdichte oder die Landschaftskomplexität positiv reagiert. Dennoch haben keine Experimente die Wirtsdichte in Landschaften unterschiedlicher Komplexität manipuliert. Hier berichten wir von den Ergebnissen eines Freilandexperiments, das unternommen wurde, um zu bestimmen, wie die Wirtsdichte und die Struktur der Agrarlandschaft gemeinschaftlich die Parasitierung und die Parasitoidendiversität bei Pseudaletia unipuncta (Haworth) (Lepidoptera: Noctuidae) beeinflussen. Die Parasitierung wurde gemessen indem experimentell P. unipuncta Larven in geringen (1 Larve/Pflanze) und hohen (3 Larven/Pflanze) Dichten hinzugefügt wurden, um die Parasitierung in kommerziellen Kornfeldern zu erfassen, die in komplexen und einfachen Agrarlandschaften lagen. 98.4% der Parasitierung entfiel auf die braconiden Wespen Glyptapanteles militaris (Walsh) und Meteorus spp. Die Struktur der Landschaft beeinflusste die Parasitierung nicht (durchschnittlich 80.2%) und zeigte entgegen den Erwartungen einen Trend zu einer erhöhter Parasitoidenartenzahl und -diversität in der einfachen Landschaft. Eine zunehmende Wirtsdichte ließ einen Trend zu einer erhöhten Parasitoidenartenzahl und -diversität erkennen, und sie beeinflusste die Parasitierung auf dem Artenlevel der Parasitoide unterschiedlich. G. militaris parasitierte einen signifikant höheren Anteil der Wirte bei geringen Wirtsdichten, während für Meteorus spp. (vor allem M. communis) das Gegenteil zutraf. Diese sich ausgleichenden Reaktionen der Parasitoide führten zum Fehlen eines Gesamteffekts der Wirtsdichte auf die Parasitierung. Die unterschiedlichen Reaktionen dieser Parasitoide auf die Wirtsdichte werden in Zusammenhang mit Unterschieden in der Morphologie und Lebensweise diskutiert. Unsere Ergebnisse weisen darauf hin, dass die spezifische Zusammensetzung von Ansammlungen von Parasitoiden die Parasitierung bei unterschiedlichen Wirtsdichten unabhängig von der Komplexität der Landschaftsstruktur signifikant verändern könnte.     

Genetic mapping of QTLs affecting productivity and plant architecture in a full-sib cross from non-inbred parents in Cassava (<Emphasis Type="Italic">Manihot esculenta</Emphasis> Crantz)

An attempt was made to identify quantitative trait loci (QTLs) for several productivity and plant architecture traits in a full-sib progeny of 144 individuals from two non-inbred parents in cassava. A molecular linkage map of this cross constructed previously with over 250 markers was the source of molecular markers. The progeny were grown under field conditions at two locations (Palmira and Quilichao) in Colombia and evaluated in 2 years (1998 and 1999) for architecture and productivity traits. Architecture traits evaluated were plant height (PH), branching height (BH), branching levels (BL), branching index (BI), stem portion with leaves (SPL) and leaf area index (LAI). Productivity traits were those related to total dry matter production and distribution, namely fresh root yield (FRY), fresh shoot yield (FSY), harvest index (HI) and the number of storage roots (NR). Phenotypic evaluation of the traits in this population revealed continuous variation for all traits. Broad-sense heritability estimates, ranged from 36% (for NR) to 94% (for BH). Several significant phenotypic correlations were observed between architecture and productivity traits. Primary QTLs, using the single-QTL model, and secondary QTLs, by a primary QTL interaction model, were detected by interval mapping. A total of 30 primary QTLs and 84 secondary QTLs were detected. We identified 35% of detected QTLs in two or more trials, the other QTLs were environment-specific. These results underscore the significant genotype × environment interactions found for most of the traits. Several genomic segments affecting multiple traits were identified and were in agreement with correlation among traits. All QTLs identified for FRY were found associated with either component traits of productivity or architecture traits. This study suggests that QTLs for plant architecture can be used to improve productivity. However an exhaustive search and analysis of QTLs controlling architecture is required before marker-assisted selection (MAS) for increasing productivity can be initiated.Communicated by H. C. Becker     

Metapopulation theory for fragmented landscapes

We review recent developments in spatially realistic metapopulation theory, which leads to quantitative models of the dynamics of species inhabiting highly fragmented landscapes. Our emphasis is in stochastic patch occupancy models, which describe the presence or absence of the focal species in habitat patches. We discuss a number of ecologically important quantities that can be derived from the full stochastic models and their deterministic approximations, with a particular aim of characterizing the respective roles of the structure of the landscape and the properties of the species. These quantities include the threshold condition for persistence, the contributions that individual habitat patches make to metapopulation dynamics and persistence, the time to metapopulation extinction, and the effective size of a metapopulation living in a heterogeneous patch network.     

Spatial distribution of soil seed banks of three African savanna woody species at two contrasting sites

In southern African savannas, bush encroachment is a major problem for range managers. However, little is understood of the actual regeneration processes leading to it, and in particular the role of soil seed banks. The horizontal (between microsites) and vertical (with depth in litter and soil) distribution of soil seed banks of the microphyllous woody species, Acacia tortilis, A. nilotica and Dichrostachys cinerea (all legumes of the Mimosoideae), were quantified in an area with low intensity grazing (reserve), and a bordering cattle farm with high intensity grazing (farm). Species differed in seed bank densities between microsites and sites. Seed densities for all species were highest below parent tree canopies and decreased with distance beyond the canopy, and with soil depth. D. cinerea had the smallest seed bank associated with parent trees, particularly on the farm (8 vs. 1643 seeds/tree on the reserve), A. tortilis had the largest (6357, 31910), with A. nilotica intermediate (1789, 1906). The proportion of current (recently fallen) versus old (1 year old) seeds differed between species and sites. These species form at least short-term persistent seed banks with the old seeds largely representing the persistent seed bank. Seed densities in the open (inter-canopy) and those dispersed under either of the other two (non-parental) study species were much lower than those associated with parent trees. The latter were mostly found under the acacias (single-stemmed) rather than D. cinerea (multistemmed). Total seed store per parent plant increased with plant size (best fits were mostly power curves of canopy area). A large proportion of intact seeds were viable, namely 81–84% for A. tortilis, 68–77% for A. nilotica and 63–78% for D. cinerea, with no differences between sites. Viability tended to increase with depth of burial, except for A. nilotica seeds at the 3–5 cm depths on the farm. At the landscape scale there were 1.5 million and 140000 A. tortilis seeds/ha on the reserve and farm respectively, with corresponding values of 2000 and 31000 for D. cinerea, and 23000 and 86000 for A. nilotica.     

Advantages of using different data sources in assessment of landscape change and its effect on visual scale

This paper presents a data-flexible indicator framework for analysis of visual landscape character; the VisuLands framework. The theory-based framework encompasses currently used indicators for visual assessment based on four different data sources: land cover data, aerial photographs, landscape photographs and field observations. This paper presents a study applying the VisuLands framework in analysis of landscape change and its effect on visual scale in a landscape in Southeast Sweden. The paper provides a critical assessment of the pros and cons of the approach. It identifies the advantages and disadvantages of using different data sources as well as the applicability and sensitivity of existing indicators in detecting visible landscape change. The results show that while some of the VisuLands indicators are relatively easily applied, others are more complex and demanding in terms of interpretation. The flexibility of the VisuLands framework makes it applicable and user-friendly as it helps meet the requirements and restrictions of the users. The assessment has shown that the different data sources complement each other and that applying indicators using various data sources, when available, will enhance the comprehensiveness of visual landscape assessment. The experience of this study is that the VisuLands framework is a useful tool in landscape analysis, monitoring and planning, which provides a repeatable, systematic and transparent approach with strong links to landscape theory.