Integrating GIS and expert judgment in a multi-criteria analysis to map and develop a habitat suitability index: A case study of large mammals on the Malayan Peninsula

Many habitat patches in tropical landscapes have become less suitable for wildlife due to an increase in anthropogenic disturbances. An index of habitat suitability based on the ecological factors that collectively determine the suitability of an organism's habitat is important for conservation planning. However, a widely accepted and comprehensive multi-criteria habitat suitability index for umbrella species is still lacking, particularly in areas where information related to the biology and ecology of the species of interest is not available. Therefore we develop preliminary habitat maps and measure the degree of habitat suitability for large mammals, focusing on four umbrella species in the State of Selangor, Peninsular Malaysia: Panthera tigris jacksoni (Malayan tiger), Tapirus indicus (Malayan tapir), Helarctos malayanus malayanus (Malayan sun bear), and Rusa unicolor cambojensis (sambar deer). The former two are endangered and the latter two are vulnerable according to the IUCN Red List. The suitability of habitat patches for each species was measured across the entire study area as well as in nine wildlife protected areas by integrating GIS data and expert opinion. Expert opinions were used as the source of information regarding the stresses faced by the species because there was insufficient information available from ground surveys.We developed an index and maps of habitat suitability for each species, which were then integrated to represent a combined index (ranging from 0 to 27) and spatially explicit maps of the area's habitat suitability for large mammals. The average large mammal habitat suitability index value of the State of Selangor (9) indicates that many habitat patches have become unsuitable for such species. Of the nine wildlife protected areas, Fraser's Hill (22), Sungai Dusun (22), and Bukit Kutu (21) are very suitable; Klang Gate (20) and Templers Park (17) are suitable; and the remaining four are unsuitable for large mammals. We assume that this preliminary habitat suitability index and mapping are useful for conservation planning of wildlife habitats at both landscape and regional scales, as well as providing an initial foundation for revision by future research with significant new information.     

Evaluating the performance of multiple remote sensing indices to predict the spatial variability of ecosystem structure and functioning in Patagonian steppes

Assessing the spatial variability of ecosystem structure and functioning is an important step towards developing monitoring systems to detect changes in ecosystem attributes that could be linked to desertification processes in drylands. Methods based on ground-collected soil and plant indicators are being increasingly used for this aim, but they have limitations regarding the extent of the area that can be measured using them. Approaches based on remote sensing data can successfully assess large areas, but it is largely unknown how the different indices that can be derived from such data relate to ground-based indicators of ecosystem health. We tested whether we can predict ecosystem structure and functioning, as measured with a field methodology based on indicators of ecosystem functioning (the landscape function analysis, LFA), over a large area using spectral vegetation indices (VIs), and evaluated which VIs are the best predictors of these ecosystem attributes. For doing this, we assessed the relationship between vegetation attributes (cover and species richness), LFA indices (stability, infiltration and nutrient cycling) and nine VIs obtained from satellite images of the MODIS sensor in 194 sites located across the Patagonian steppe. We found that NDVI was the VI best predictor of ecosystem attributes. This VI showed a significant positive linear relationship with both vegetation basal cover (R² = 0.39) and plant species richness (R² = 0.31). NDVI was also significantly and linearly related to the infiltration and nutrient cycling indices (R² = 0.36 and 0.49, respectively), but the relationship with the stability index was weak (R² = 0.13). Our results indicate that VIs obtained from MODIS, and NDVI in particular, are a suitable tool for estimate the spatial variability of functional and structural ecosystem attributes in the Patagonian steppe at the regional scale.     

Comparative analysis of inner cavities and ligand migration in non-symbiotic AHb1 and AHb2

This study reports a comparative analysis of the topological properties of inner cavities and the intrinsic dynamics of non-symbiotic hemoglobins AHb1 and AHb2 from Arabidopsis thaliana. The two proteins belong to the 3/3 globin fold and have a sequence identity of about 60%. However, it is widely assumed that they have distinct physiological roles. In order to investigate the structure–function relationships in these proteins, we have examined the bis-histidyl and ligand-bound hexacoordinated states by atomistic simulations using in silico structural models. The results allow us to identify two main pathways to the distal cavity in the bis-histidyl hexacoordinated proteins. Nevertheless, a larger accessibility to small gaseous molecules is found in AHb2. This effect can be attributed to three factors: the mutation Leu35(AHb1) → Phe32(AHb2), the enhanced flexibility of helix B, and the more favorable energetic profile for ligand migration to the distal cavity. The net effect of these factors would be to facilitate the access of ligands, thus compensating the preference for the fully hexacoordination of AHb2, in contrast to the equilibrium between hexa- and pentacoordinated species in AHb1. On the other hand, binding of the exogenous ligand introduces distinct structural changes in the two proteins. A well-defined tunnel is formed in AHb1, which might be relevant to accomplish the proposed NO detoxification reaction. In contrast, no similar tunnel is found in AHb2, which can be ascribed to the reduced flexibility of helix E imposed by the larger number of salt bridges compared to AHb1. This feature would thus support the storage and transport functions proposed for AHb2. This article is part of a Special Issue entitled: Oxygen Binding and Sensing Proteins.     

An improved neutral landscape model for recreating real landscapes and generating landscape series for spatial ecological simulations

Many studies have assessed the effect of landscape patterns on spatial ecological processes by simulating these processes in computer‐generated landscapes with varying composition and configuration. To generate such landscapes, various neutral landscape models have been developed. However, the limited set of landscape‐level pattern variables included in these models is often inadequate to generate landscapes that reflect real landscapes. In order to achieve more flexibility and variability in the generated landscapes patterns, a more complete set of class‐ and patch‐level pattern variables should be implemented in these models. These enhancements have been implemented in Landscape Generator (LG), which is a software that uses optimization algorithms to generate landscapes that match user‐defined target values. Developed for participatory spatial planning at small scale, we enhanced the usability of LG and demonstrated how it can be used for larger scale ecological studies. First, we used LG to recreate landscape patterns from a real landscape (i.e., a mountainous region in Switzerland). Second, we generated landscape series with incrementally changing pattern variables, which could be used in ecological simulation studies. We found that LG was able to recreate landscape patterns that approximate those of real landscapes. Furthermore, we successfully generated landscape series that would not have been possible with traditional neutral landscape models. LG is a promising novel approach for generating neutral landscapes and enables testing of new hypotheses regarding the influence of landscape patterns on ecological processes. LG is freely available online.     

Characteristics of a landscape water with high salinity in a coastal city of China and measures for eutrophication control

Eutrophication of landscape waters is drawing public concerns in China but few studies have been conducted on the problem associated with high water salinity as what happens at Sino-Singapore Tianjin Eco-city in Tianjin, a coastal metropolis of northern China. In order to find ways for eutrophication control, a comparative study was conducted on three landscape water bodies, namely Qingjing Lake, Jiyun River and Jiyun River Oxbow, which are under varied conditions of salinity, organic, and nutrients intrusion. The spatial and temporal variations of water quality were revealed by water sampling and analyses, and correlative relationships were obtained between water salinity and other parameters related to eutrophication. By utilizing a trophic level index (TLI), the eutrophication status of the three landscape water bodies in different seasons could further be evaluated. As a result, water temperature, as expected, showed the strongest effect on eutrophication because higher TLI together with higher Chl-a concentrations tended to occur in later spring and summer seasons, while nutrient concentration, especially TP, was also the determinative factor to the eutrophication status. Of the three water bodies, the Jiyun River Oxbow showed a salinity as high as 20 g/L or more in contrast with the other two water bodies with salinity as 4–5 g/L. Although its TP concentration was usually very low (about 0.1 mg/L), it was under a moderate eutrophication status almost in all seasons, indicating that high salinity tends to induce alga growth. Dilution of saline inflow and nutrients reduction could thus be proposed as the main measures for eutrophication control of landscape waters in the study area.     

Biceps femoris and semitendinosus tendon/aponeurosis strain during passive and active (isometric) conditions

The purpose of this study was to quantify strain and elongation of the long head of the biceps femoris (BFlh) and the semitendinosus (ST) tendon/aponeurosis. Forty participants performed passive knee extension trials from 90° of knee flexion to full extension (0°) followed by ramp isometric contractions of the knee flexors at 0°, 45° and 90° of knee flexion. Two ultrasound probes were used to visualize the displacement of BFlh and ST tendon/aponeurosis. Three-way analysis of variance designs indicated that: (a) Tendon/aponeurosis (passive) elongation and strain were higher for the BFlh than the ST as the knee was passively extended (p < 0.05), (b) contraction at each angular position was accompanied by a smaller BFlh tendon/aponeurosis (active) strain and elongation than the ST at higher levels of effort (p < 0.05) and (c) combined (passive and active) strain was significantly higher for the BFlh than ST during ramp contraction at 0° but the opposite was observed for the 45° and 90° flexion angle tests (p < 0.05). Passive elongation of tendon/aponeurosis has an important effect on the tendon/aponeurosis behavior of the hamstrings and may contribute to a different loading of muscle fibers and tendinous tissue between BFlh and ST.     

Landscape structural analysis of the Lençóis Maranhenses national park: implications for conservation

Our work evaluated the anthropic effects on the landscape structure of the Lençóis Maranhenses National Park (LMNP) and its Buffer Zone, and proposed strategies for the region’s conservation. LMNP is an important protected area in Brazilian north coast which protects a unique wetland ecosystem composed of sand dunes fields and a coastal vegetation called restinga. Supervised mapping of LMNP and a surrounding buffer of 3 km was carried out through high resolution and fine scale (1:5000) satellite images. The mapped area was subdivided in 1000 ha hexagonal Analysis Units (AU) and the following landscape metrics were calculated for each one of them: cover area (CA) of each soil cover class - dune fields (CA-DUNES), water bodies (CA-WATER), dense restinga (CADENSE), scattered restinga (CA-SCATTER), grassland (CA-SANDY), mangroves (CA-MANG), anthropogenic activity (CA-ANTRO) and, secondary vegetation (CA-SECOND); Landscape Shannon Diversity Index (SHDI), and; percentage of native vegetation cover (NV−COV). Pearson correlations were performed between the CA of each class and SHDI to identify the classes most correlated to CA-ANTRO. Our results showed that anthropic classes (crops, trails, and villages) had a stronger correlation (Pearson Correlation, r ≈ 0.65) with phytophysiognomies of dense restinga, secondary vegetation and SHDI, thus indicating that the land use conversion occurs in dense restinga areas and promotes vegetation secondarization, as well as increasing fragmentation. At least, 42% of the dense restinga habitats was destroyed due to human activities. Five conservation and restoration strategies were proposed in a local scale depending on the percentage of native vegetation cover on each AU, from the most to less conserved: (a) only conservation; (b) conservation with management; (c) management; (d) management and restoration; and, (e) restoration. The implementation of Agroforestry Systems with agro-successional restoration goals was recommended as an alternative for land use.     

Effect of forest landscapes composition and configuration on bird community and its functional traits in a hotspot of biodiversity of Chile

Understanding the effect of landscape configuration on the bird species richness and their functional traits (dietary preferences) is important to link the conservation and restoration plans to the production of the crops. Our aims were: 1) to study the influence of forest types (native, mixed and plantations) on the bird species richness in two agroforestry landscapes (heterogeneous/homogeneous); 2) to assess the effect of size/density of forest patches in the birds’ functional traits; 3) to evaluate the effect of isolated trees on them, and 4) to discuss conservation and restoration measures for the birds’ functional traits in agroforestry landscapes. We used hierarchical occupancy models to evaluate the effect of different landscape metrics and detectability measures on bird communities. We recorded a total of 64 bird species. The estimated species richness was considerable higher in homogeneous landscape (31.7 ± 2.7) than heterogeneous (27.3 ± 2.5). Our results showed the bird assemblage had a positive trend with native forests, negative with mixed forests and neutral trend for plantations. The granivores and insectivore’s species showed significant preferences for homogeneous landscape, while omnivores had significant preferences for heterogeneous landscape. Carnivores/Piscivores and herbivores/frugivores species did not show preferences by any landscape type. The response of functional traits depended on different forests attributes. The isolated trees had a significant effect on the birds’ functional traits. In conclusion, it is necessary a deep knowledge about the relationship between the landscape configuration and the bird species richness/functional traits. These findings could help in the future with the conservation, restoration, and rewilding policies in this important hotspot of biodiversity, avoiding alterations in the ecosystem services.