The role of endoglucanase and endoxylanase in liquefaction of hydrothermally pretreated wheat straw

The role of endocellulases and endoxylanase during liquefaction and saccharification of hydrothermally pretreated wheat straw was studied. The use of a flow‐loop setup with in‐line magnetic resonance imaging enabled frequent measurements of viscosity at 55°C during saccharification at 6% total solids content. Viscosity data were complemented with off‐line measurements of fiber lengths and release of soluble sugars. A clear correlation between fiber attrition and a decrease in viscosity was found. Fiber lengths and viscosity dropped quickly within the first hour and then stagnated, while sugar yields increased substantially thereafter, illustrating that liquefaction and saccharification are separate mechanisms. Both endoglucanase and endoxylanase were shown to have a significant effect on viscosity during liquefaction while the addition of endoxylanase also increased sugar yield. © 2014 American Institute of Chemical Engineers Biotechnol. Prog., 30:923–931, 2014     

Modeling Microbially Induced Carbon Degradation in Redox-Stratified Subsurface Environments: Concepts and Open Questions

The degradation of organic matter, including organic contaminants, in subsurface environments is controlled by the abundances and functional capabilities of the resident microorganisms. As a consequence, modeling approaches simulating the fate of organics and related changes in redox conditions have to account for the effects of microbial activity on the degradation kinetics, as well as for the spatial and temporal distributions of the chemical species (e.g., terminal electron acceptors, nutrients or toxic substances) that control microbial activity. The present paper reviews the principal modeling approaches that are used to simulate the degradation of organic matter in water-saturated porous media. Special attention is devoted to modeling the bioavailability of chemical substrates of microbial reactions, and the sequential occurrence of terminal electron accepting pathways. While the various model approaches found in the literature are capable of reproducing field data sets from various environmental settings, they are rarely compared in terms of performance and predictive ability. Most approaches incorporate simplifications or empirical rate laws, which limit their range of application. Thus, there remains a need for further development of more general, process-based modeling concepts to represent microbially mediated reactive processes.     

The historical ecology of the large mammal populations of Ngorongoro Crater,Tanzania, east Africa

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The caries-attrition competition

Contradictory reports on the interreation of caries and attrition concerning their destructive activity at the occlusal surface of teeth required more investigation. Some suggested that the abrasive action of attrition worked against the progress of decay. Others proposed that attrition facilitated the development of caries in dentine exposed due to the dental wear. A comparison of the condition of teeth in western societies from an intermediate stage, with the preceding period characterized by excessive attrition, and with the following period of ongoing reduction of dental wear, might elucidate the mutual relationship. For this reason the almost complete dental assemblage of fifty men, whalers buried during their short sojourn in the Arctic in the 17th and 18th centuries at a Dutch whaling station, and the data of their contemporaries, were evaluated. The results confirmed the proposition that the rise in caries incidence from (pre-) medieval times on, was associated with an ongoing fall of dental attrition. Within this sample of an intermediate phase, one sees that the percentage of carious molars decreases considerably when the degree of dental wear increases. Besides, at the occlusal surface the decay was almost exclusively located in the natural fissures and pits of teeth, not in the exposed dentine due to wear. These findings strongly suggest a competitive relationship between progress of caries and attrition. The best impression of the attrition rate is gained by linkage of degree of dental attrition (i.e. functional age) to age at death. The wide age ranges fitting to the degrees of molar wear make it hazardous to use attrition for age determination.     

Allometric scaling laws for water uptake by plant roots

This paper develops scaling laws for plant roots of any arbitrary volume and branching configuration that maximize water uptake. Water uptake can occur along any part of the root network, and thus there is no branch-to-branch fluid conservation. Maximizing water uptake, therefore, involves balancing two flows that are inversely related: axial and radial conductivity. The scaling laws are tested against the root data of 1759 plants from 77 herbaceous species, and compared with those from the WBE model. I further discuss whether the scaling laws are invariant to soil water distribution. A summary of some of the results follows. (1) The optimal radius for a single root (no branches) scales with volume as . (2) The basic allometric scaling for root radius branches (r_i+1=β*r_i) is of the form , where f(N)=A(N)/(n_b*(1+A(N))), n_b is the number of branches, and A(N) and ε(N) are functions of the number of root diameter classes (not constants as in the WBE model). (3) For large N, β converges to the β from the WBE model. For small N, the β's for the two models diverge, but are highly correlated. (4) The fractal assumption of volume filling of the WBE model are also met in the root model even though they are not explicitly incorporated into it. (5) The WBE model for rigid tubes is an asymptotic solution for large root systems (large N and biomass). (6) The optimal scaling solutions for the root network appears to be independent of soil water distribution or water demand. The data set used for testing is included in the electronic supplementary archive of the journal.     

Colorimetry and prime colours – a theorem

Human colour vision is the result of a complex process involving topics ranging from physics of light to perception. Whereas the diversity of light entering the eye in principle span an infinite-dimensional vector space in terms of the spectral power distributions, the space of human colour perceptions is three dimensional. One important consequence of this is that a variety of colours can be visually matched by a mixture of only three adequately chosen reference lights. It has been observed that there exists one particular set of monochromatic reference lights that, according to a certain definition, is optimal for producing colour matches. These reference lights are commonly denoted prime colours. In the present paper, we intend to rigorously show that the existence of prime colours is not particular to the human visual system as sometimes stated, but rather an algebraic consequence of the manner in which a kind of colorimetric functions called colour-matching functions are defined and transformed. The solution is based on maximisation of a determinant determining the gamut size of the colour space spanned by the prime colours. Cramer’s rule for solving a set of linear equations is an essential part of the proof. By means of examples, it is shown that mathematically the optimal set of reference lights is not unique in general, and that the existence of a maximum determinant is not a necessary condition for the existence of prime colours.     

Principal axis analysis of dental attrition data

The principal axis method is an age independent analysis method for dental attrition data which avoids many problems associated with earlier methods of analysis, correlation and regression. A principal axis equation is determined from the scatter of M1 on X and M2 on Y, and the slope of the equation can be used to indicate rate of wear. High slopes indicate rapid rates of wear. Because rate of wear rather than degree of wear is the parameter of interest, the procedure is age independent. Confidence regions can be calculated to test the distinctness of the slopes. Dental data from three Amerind skeletal samples, Indian Knoll, Hardin Site and Campbell Site, are used to illustrate the technique. Because least squares fits such as the principal axis solution are strongly influenced by the magnitude of variance in the data, two different methods of ordinal data collection are used in this test: Molnar's 1–8 and Scott's 4–40 scales. The Scott scoring system provides more satisfactory results when used in the principal axis analysis technique because of smaller confidence regions. The testing of the technique on other samples is urged.     

Temporomandibular joint osteoarthritis in a British skeletal population

The potential role of dental function in TMJ osteoarthritis is examined in an ancient British population. Human skeletal remains from five archaeological sites in England (n = 369) were studied to assess the associations between the presence of osteoarthritis and dental function variables, in particular antemortem tooth loss and dental attrition. Individuals aged over 17 years with at least a portion of either the left or right TMJ were included in the study. Each individual was scored for the occurrence of arthritic lesions on the mandibular condyle and glenoid fossa, the level of dental attrition, and antemortem tooth loss. A loglinear analysis was performed with osteoarthritis as the dependent variable and tooth loss, attrition, sex, and age as the independent variables. Tooth loss and sex are not significantly associated with TMJ osteoarthritis when attrition and age are included in the analysis. Attrition is significantly associated with osteoarthritis even when the analysis corrects for age. The significant association of attrition with osteoarthritis suggests that dental functions may have an influence, separate from ageing, on the development of TMJ osteoarthritis.