Proteomics of Juvenile Senegal Sole (Solea senegalensis) Affected by Gas Bubble Disease in Hyperoxygenated Ponds

Solea senegalensis is a commercial flat fish traditionally farmed in earth ponds in coastal wetlands that might also become important to more intensive aquaculture. Gas bubble disease (GBD) is a potential risk for outdoor fish farming, particularly in certain periods of the year, related to improper management leading to macroalgae blooms. Physical-chemical conditions inducing hyperoxia, including radiation, temperature, and high levels of dissolved oxygen, have been monitored in fish affected by GBD together with observed symptoms. Exophthalmia, subcutaneous emphysemas, obstruction of gill lamellae, hemorrhages, and anomalous swimming were the main effects of oxygen supersaturation. A proteomic study was carried out for the first time under aquaculture conditions and protein expression changes are described for fish that were subject to hyperoxic conditions. Proteins identified in gill of GBD-affected fish are related to oxidative alteration of cytoskeleton structure/function (β-tubulin, β-actin), motility (light myosin chain, α-tropomyosin), or regulatory pathways (calmodulin, Raf kinase inhibitor protein), reflecting the central role of gill in oxygen exchange. Hepatic proteins identified are related to protein oxidative damages (β-globin, FABPs), protection from oxidative stress (DCXR, GNMT), and inflammatory response (C3), in agreement with the predominant metabolic role of liver. Comparison of protein expression patterns and protein identification are suggested as potentially specific hyperoxia biomarkers that would facilitate prevention of GBD outbreaks. E. Salas-Leiton and B. Cánovas-Conesa had similar contributions to the work and should be considered as first authors An erratum to this article can be found at     

Water level drawdown makes boreal peatland vegetation more responsive to weather conditions

Climate warming and projected increase in summer droughts puts northern peatlands under pressure by subjecting them to a combination of gradual drying and extreme weather events. The combined effect of those on peatland functions is poorly known. Here, we studied the impact of long-term water level drawdown (WLD) and contrasting weather conditions on leaf phenology and biomass production of ground level vegetation in boreal peatlands. Data were collected during two contrasting growing seasons from a WLD experiment including a rich and a poor fen and an ombrotrophic bog. Results showed that WLD had a strong effect on both leaf area development and biomass production, and these responses differed between peatland types. In the poor fen and the bog, WLD increased plant growth, while in the rich fen, WLD reduced the growth of ground level vegetation. Plant groups differed in their response, as WLD reduced the growth of graminoids, while shrubs and tree seedlings benefited from it. In addition, the vegetation adjusted to the lower WTs, was more responsive to short-term climatic variations. The warmer summer resulted in a greater maximum and earlier peaking of leaf area index, and greater biomass production by vascular plants and Sphagnum mosses at WLD sites. In particular, graminoids benefitted from the warmer conditions. The change towards greater production in the WLD sites in general and during the warmer weather in particular, was related to the observed transition in plant functional type composition towards arboreal vegetation.     

近30年鄱阳湖滨岸缓冲带土地利用变化及生态系统服务价值

滨岸缓冲带作为湖泊生态系统的重要组成部分,研究其土地利用变化及生态系统服务价值（ESV）对维持湖泊水安全和生物多样性具有重要意义。基于1988-2018年间7期Landsat遥感卫星影像数据,采用土地利用相关分析、ESV当量因子估算等方法,深入分析了鄱阳湖滨岸缓冲带近30年土地利用时空演变特征及ESV变化。结果表明：（1）近30年鄱阳湖滨岸缓冲带土地利用类型逐渐形成了以耕地为主导,林地、草地、水域、建设用地等主要地类占比相对均衡的格局。耕地面积明显增加,增幅为21.48%;建设用地和林地面积增幅分别为542.90%和326.23%,耕地、水域、草地是二者面积增加的主要来源;草地面积出现明显减少,幅度达66.79%,主要转变为林地、耕地和水域;水域和未利用地面积出现小幅减少。研究区内,南昌县综合土地利用动态度以1.81%高于其他11个区（县）,土地利用较其他区（县）出现更大的变化。（2）近30年鄱阳湖滨岸缓冲带生态系统服务价值总体呈现先上升后下降的趋势,总损失25.54亿元,降幅为24.18%;各类ESV的变化趋势与各土地利用类型面积变化的趋势相似,其中水文调节为研究区内最主要的生态服务功能,占总ESV的66.03%。（3）水域和草地对ESV变化的贡献率最大,是鄱阳湖滨岸缓冲带ESV变化的主要影响因素;水域面积减少是导致滨岸缓冲带ESV下降的主要原因。总体而言,修复和保护滨岸缓冲带内的水域和草地对维持鄱阳湖生态系统生物多样性和服务功能具有重要作用,对周边乃至长江中下游地区的生态环境保护亦具有重要意义。     

Phenological responses to extreme droughts in a Mediterranean forest

Mediterranean regions are projected to experience more frequent, prolonged and severe drought as a consequence of climate change. We used a retractable rainfall shelter, to investigate the impact of extreme droughts on the development of Quercus ilex leaves, flowers and fruit. In 2008, 97% of rainfall was excluded from a forest plot during the autumn, representing 50% of the 1127 mm of rain that fell during the year. In 2009, 87% of rainfall was excluded during the spring, representing 58% of the 749 mm that fell during the year. The rainfall shelter did not impact neither incident radiation nor air temperature. Autumn rainfall exclusion did not significantly affect leaf, flowers or fruit development. Spring rainfall exclusion resulted in larger and more sustained depression of leaf water potential during the key phases of foliar and floral development. Consequently, only half of the sampled trees (6) reached the shoot lengthening stage which leads to functionally mature leaves (phenophase 4), with one abandoning leaf development at budburst (phenophase 3) and the other two at the bud swelling stage (phenophase 2). All trees of the control plot passed phenophase 4, with most reaching complete leaf development. The impact of extreme droughts on flower development differed between the sexes. The spring exclusion had no effect on male flower, but only one of six trees completed female fruit maturation, compared with four in the control plot. The difference between the male and female drought impacts is likely attributable to the occurrence of male floral development before the period of lowest leaf water potential, and to the lower resource allocation requirements of male flowers. The information provided by our experimental approach may constitute a crucial step to evaluate the impact of increasing drought due to climate change on the most dominant Mediterranean tree species and to help drawing a full picture of the ecological consequences of the decline in water resource on forest dynamics under changing conditions.     

Biotic crises and stages of radiolarian evolution in the Phanerozoic

The questions of ecology and taphonomy of radiolarians are reviewed and reexamined. In Recent oceans and seas, the major part of the “radiolarian rain” (dead individuals) comes from the layer of the water column which is not deeper than 500 m; therefore, the bottom radiolarian thanatocenoses and taphocenoses are formed in all oceanic zones, including the coastal and central oligotrophic regions of oceans. However, radiolarians should not be regarded as indicators of exclusively deepwater oceanic conditions. The crucial moments in the evolution of radiolarians at the major Phanerozoic boundaries are recognized. A dynamic model of cyclic development of radiolarians in the Phanerozoic is proposed and four phases and nine stages in their evolution are recognized. The absence of an outburst of radiolarian biodiversity in the Holocene is shown. Many great extinctions of radiolarians occurred at the boundaries between seasons of galactic years.     

Effect of temperature changes on the reproductive cycle of roach in Lake Geneva from 1983 to 2001

In Lake Geneva, the surface water temperature has increased by 1° C over 20 years probably as a result of climate change. The effects of changes in temperature on the reproductive cycle of the roach Rutilus rutilus were assessed in a 19 year survey. Over time, spawning tended to begin earlier. The consequences of temperature changes were assessed on two different stages of the female reproductive cycle: the development of the ovaries from the beginning of autumn to ovulation, and the onset of the spawning period. The development of the ovaries was studied for 7 consecutive years from October to June. From 1 October to the onset of spawning, it was possible to assess the gonado-somatic index ( I _G) of females in terms of time expressed as a sum of degree-days. The correlation between I _G and the sum of degree-days was +0·97. The onset of the roach spawning period in Lake Geneva was triggered by a thermal threshold (median and range 190 ± 10 degree-days for the 15 previous days). From October to April, climate warming accelerated the development of gonads, then in May, a thermal threshold that triggered the onset of roach spawning occurred earlier.     

Respiratory cycle related EEG changes: Modified respiratory cycle segmentation

Respiratory cycle related EEG change (RCREC) is characterized by significant relative EEG power changes within different stages of respiration during sleep. RCREC has been demonstrated to predict sleepiness in patients with obstructive sleep apnoea and is hypothesized to represent microarousals. As such RCREC may provide a sensitive marker of respiratory arousals. A key step in quantification of RCREC is respiratory signal segmentation which is conventionally based on local maxima and minima of the nasal flow signal. We have investigated an alternative respiratory cycle segmentation method based on inspiratory/expiratory transitions. Sixty two healthy paediatric participants were recruited through staff of local universities in Bolivia. Subjects underwent attended polysomnography on a single night (Compumedics PS2 system). Studies were sleep staged according to standard criteria. C3/A2 EEG channel and time-locked nasal flow (thermistor) were used in RCREC quantification. Forty Seven subjects aged 7–17 (11.4 ± 3) years (24M:23F) were found to have usable polysomnographs for the purpose of RCREC calculation. Respiratory cycles were segmented using both the conventional and novel (transition) methods and differences in RCREC derived from the two methods were compared in each frequency band. Significance of transition RCREC as measured by Fisher's F value through analysis of variance (ANOVA) was found to be significantly higher than the conventional RCREC in all frequency bands (P < 0.05) but beta. This increase in statistical significance of RCREC as demonstrated with the novel transition segmentation approach suggests better alignment of the respiratory cycle segments with the underlying physiology driving RCREC.     

Long-term vegetation stability in northern Europe as assessed by changes in species co-occurrences

Background: The effect of the anticipated climate change on the stability of vegetation and the factors underlying this stability are not well understood.

Aims: Our objective was to quantify long-term vegetation changes in a range of habitats in northern Europe by exploring species co-occurrences and their links to diversity and productivity gradients.

Methods: We re-sampled vegetation in 16 arctic, mountain and mire sites 20 to 90 years after the original inventories. A site-specific change in species assemblages (stability) was quantified using species co-occurrences. Using a randomisation test we tested whether the changes observed were significantly greater than those expected by chance. Relationships between patterns in vegetation stability and time between surveys, numbers of plots, or species diversity and proxies for productivity, were tested using regression analysis.

Results: At most sites the changes in species co-occurrences of vascular plants and bryophytes were greater than those expected by chance. The changes observed were found to be unrelated to gradients in productivity or diversity.

Conclusions: Changes in species co-occurrences are not strongly linked to diversity or productivity gradients in vegetation, suggesting that other gradients or site-specific factors (e.g. land use or species interactions) may be more important in controlling recent compositional shifts in vegetation in northern Europe.