Exploring the taxonomic and functional diversity of marine benthic micro-Eukaryotes along the Red Sea coast of Jeddah city

BackgroundsDiverse marine habitats along Jeddah's Red Sea coast support rich biodiversity. Few studies have been done on its diverse communities, especially its microbial counterparts. Metagenomic analysis of marine benthic micro-eukaryotic communities was performed for the first time on the Red Sea coast of Jeddah. This research looks into their community structure and metabolic potential.MethodsNext-generation sequencing was used to examine the micro-eukaryotic communities of seven sedimentary soil samples from four Jeddah coast locations. After isolating DNA from seven benthic sedimentary soil samples, the 18S rDNA V4 regions were amplified and sequenced on the Illumina MiSeq. It was also verified using an Agilent Technologies 2100 Bioanalyzer with a DNA 1000 chip (Agilent Technologies, Fisher Scientific). A standard curve of fluorescence readings generated by qPCR quantification using the Illumina library was achieved using the GS FLX library. Metagenomic data analysis was used to evaluate the microbial communities' biochemical and enzymatic allocations in studied samples.ResultsBlast analysis showed that the top ten phyla were Annelida, Eukaryota, Diatomea, Porifera, Phragmoplastophyta, Arthropoda, Dinoflagellata, Xenacoelomorpha Nematoda, and uncultured. Annelida was also found in the highest percentage (93%), in the sample M followed by Porifera (64%), the most abundant in the control sample then Eukaryotes (61%), Phragmatoplastophyta (55%), Arthropoda, and Diatomea (the least common) (32%). community diversity analysis: using Shannon and inverse Simpson indices showed sediment composition to be effective. Also, PICRUST2 indicated that the most abundant pathways were pyruvate fermentation to isobutanol, pyrimidine deoxyribonucleotide phosphorylation, adenosine ribonucleotide de novo biosynthesis, guanosine ribonucleotide de novo biosynthesis, NAD salvage pathway I, the super pathway of glyoxylate bypass and aerobic respiration I (cytochrome c).ConclusionResults showed that high throughput metagenomics could reveal species diversity and estimate gene profiles. Environmental factors appear to be more important than geographic variation in determining the structure of these microbial communities. This study provides the first report of marine benthic micro-eukaryotic communities found on the Red Sea coast of Jeddah and will serve as a good platform for future research.     

Geochemical baseline determination and pollution assessment of heavy metals in urban soils of Karachi,Pakistan

Karachi is one of the most populated urban agglomerations in the world. No categorical study has yet discussed the geochemical baseline concentrations of metals in the urban soil of Karachi. The main objectives of this study were to establish geochemical baseline values and to assess the pollution status of different heavy metals. Geochemical baseline concentrations of heavy metals were estimated using the cumulative frequency distribution (CDF) curves. The estimated baseline concentrations of Pb, Cr, Cu, Zn and Fe were 56.23, 12.9, 36.31, 123.03 and 11,776 mg kg⁻¹, respectively. The pollution status of heavy metals in urban soils was evaluated using different quantitative indices (enrichment factor–EF, Geo-accumulation Index–I_geo, and pollution index–PI). Enrichments factors of the selected heavy metals determined by using Fe as a normalizer showed that metal contamination was the product of anthropogenic activities. The urban soils of Karachi were found to have a moderate to moderately severe enrichment with Pb, whereas Cr and Cu has moderate and Zn has minor enrichment. I_geo results indicated moderate soil contamination by Pb at some of the sampling locations. PI for Pb, Cr, Cu and Zn was found in the range of 0.04–3.42, 0.19–1.55, 0.27–2.45 and 0.32–1.57, respectively. Large variations in PI values of Pb revealed that soil in those areas of the city which are influenced by intensive anthropogenic activities have exceptionally high concentrations of Pb. The findings of this study would contribute to the environmental database of the soil of the region and would also facilitate both at the local and the international scales, in a more accurate global environmental monitoring, which will eventually facilitate the development of management and remediation strategies for heavy metal contaminated urban soil.     

Records of ocean sunfish Mola mola along the Norwegian coast spanning two centuries, 1801–2015

Records of the ocean sunfish Mola mola along the Norwegian coast were compiled from all possible sources: literature, media, databases and museums. A total of 216 records were found between 1801 and 2015. They were distributed along the whole coast, except for the most north‐eastern part. Nearly all years with more than five records were after 2000, with 1985 as the only exception and with a maximum of 23 records in 2014. Most, 92·4%, were from July to December. Records from before 1979 were more incidental and random and no sunfish were recorded in 54 separate years between 1879 and 2015. The northernmost record was from 70° 44′ N in December 1881. No relationship between year and latitude was found. Forty‐four per cent of the records were of sunfish caught in fishing gear, 27% were found stranded and 30% were observed alive at sea. A trend of a decrease in numbers of observations of living individuals and an increase in numbers of strandings as dead individuals as autumn progressed was found. Geographical differences in the three categories of observation were also found. Among the specimens whose size was recorded, most were small, <30 kg and 70 cm in total length. Only 10 were heavier than 100 kg, all these were from before 1960. Annual numbers correlated weakly with sea temperatures. This was supported by a weak negative correlation with the North Atlantic Oscillation (NAO) index, because the majority of years since 2000 had a negative NAO.     

广东沿海几种赤潮生物的分类学研究

对１９９７年秋￣１９９８年春广东沿海多次赤潮发生期间的几种优势赤潮藻类进行了形态学和分类学研究。１种为我国首次报道引发赤潮的定革命金藻类（Ｐｒｙｍｎｅｓｉｏｐｈｙｔｅｓ）－球状棕囊藻（Ｐｈａｅｏｃｙｓｔｉｓ ｃｆ．ｇｌｉｏｂｏｓａ）。另有甲藻类７种,其中裸甲藻目（Ｇｙｍｎｏｄｉｎｉａｌｅｓ）３种：米氏裸甲藻（Ｇｙｍｎｏｄｉｎｉｕｍ ｃｆ．ｍｉｋｉｍｏｔｏｉ）、环节环沟藻（Ｇｙｒｏｄｉｎｉｕｍ ｉｎ     

Untangling cultural inheritance: language diversity and long-house architecture on the Pacific northwest coast

Many recent studies of cultural inheritance have focused on small-scale craft traditions practised by single individuals, which do not require coordinated participation by larger social collectives. In this paper, we address this gap in the cultural transmission literature by investigating diversity in the vernacular architecture of the Pacific northwest coast, where communities of hunter-fisher-gatherers constructed immense wooden long-houses at their main winter villages. Quantitative analyses of long-house styles along the coastline draw on a range of models and methods from the biological sciences and are employed to test hypotheses relating to basic patterns of macro-scale cultural diversification, and the degree to which the transmission of housing traits has been constrained by the region's numerous linguistic boundaries. The results indicate relatively strong branching patterns of cultural inheritance and also close associations between regional language history and housing styles, pointing to the potentially crucial role played by language boundaries in structuring large-scale patterns of cultural diversification, especially in relation to 'collective' cultural traditions like housing that require substantial inputs of coordinated labour.     

MIS3阶段以来黄骅北部地区潮坪地层中的微体生物群

依据渤海湾湾顶南侧、古黄河三角洲河北省黄骅市北部地区13个钻孔岩芯材料微体古生物学研究,以及地球化学背景、沉积构造分析,本文确定了自相当海洋氧同位素MIS3阶段以来中潮坪、高潮坪、淡水注入的潮坪、潮汐通道、分支河道及边滩、牛轭湖、贫营养湖、滨海湿地与富营养湖、泛滥平原一泛滥盆地等不同沉积地层中的微体生物(有孔虫、海相与非海相介形类)分布特征.在MIS3阶段高潮坪一低地沉积之后,河口与相邻低地依然持续或断续出现海相微体生物,个别钻孔中其分布甚至延续到末次盛冰期低海面地层中,但是基本都是广盐种和低盐种.这一现象与沿海构造沉降背景下河口位置长期向陆迁移,微体生物随短暂的强潮及突发的风暴潮搬运、甚至与风、水和鸟的搬运作用有关;远离古河道地点则无此现象.这些海侵事件与全球海面变化和古海面高度无关.与渤海湾顶北侧天津沿海相比,黄骅北部未见天津沿海确定的全新世早期潮下带砂质沉积单元,以及相应的微体生物群,应与当时天津沿海构造沉降速率较高有关.在三角洲与潮坪研究中,微体古生物学发挥了重要作用,而不仅是记述内容之一.     

Flume length and post‐exercise impingement affect anaerobic metabolism in brook charr Salvelinus fontinalis

The effect of flume length and impingement time on post‐exercise lactate concentrations in brook charr Salvelinus fontinalis were examined. Swimming in longer flumes increased lactate concentrations, as does impingement after swimming in short flumes.     

Recruitment prediction for Pacific herring (Clupea pallasi) on the west coast of Vancouver Island, Canada

The accurate prediction of recruitment to the fishery is a very important tool within the management structure of any fish stock being exploited. In the case of the Pacific herring, Clupea pallasi, fishery in Canada, a forecast of the abundance of each herring stock is particularly important for formulating an annual catch quota. The sustainable management of the fishery and the resource is based in part on accurate recruitment forecasting because Pacific herring are short-lived and so the recruitment contributes a significant part of the total spawning run targeted by the fishery each year. Several factors are believed be important in determining the success of recruitment besides spawners biomass. Since herrings are “r” strategists, conditions related to the egg, the planktonic, or even the juvenile stage might determine the future level of recruitment. Recently a formula that defines conditions for a semi-quantitative level of recruitment forecast was elaborated using genetic algorithms and current study attempts to improve on this model. Using salinity in two quarterly periods during the planktonic and pre-recruit stages, temperature and spawning biomass for the west coast of Vancouver Island stock, classification rules that define recruitment in 3 different levels (low, medium and high) were developed with a genetic algorithm, setting low and high boundaries for each condition. A 75% success in classifying recruitment was obtained. The model was shown to be particularly effective at predicting when the recruitment would be low, which could be important from the perspective of the Precautionary Approach and the sustainable management of this stock.     

Ecological interaction between sympatric Mytilus species on the west coast of Canada investigated using PCR markers

M. californianus is the dominant marine mussel species on exposed rocky shores, while M. trossulus is usually the dominant mussel species in more sheltered waters on the west coast of North America. Since these species are physically indistinguishable when small (< 10.0 mm), we developed two polymerase chain reaction (PCR) -based markers to discriminate between them. Using these markers, we identified mussels taken from an exposed coast ( n = 114), a sheltered harbour ( n = 80), and an upper-intertidal pool ( n = 42) on the west coast of Vancouver Island, British Columbia, Canada. M. californianus were found only on the open coast. Small M. trossulus (< 20.0 mm) were common to all three sample sites, but were extremely rare at larger sizes (> 20.0 mm) on the open coast. Our results indicate that M. californianus are excluded from sheltered waters via early life factors, while M. trossulus are excluded from the open coast due to mortality later in life.