Neutral adaptation of the genetic code to double-strand coding

Summary We lay new foundations to the hypothesis that the genetic code is adapted to evolutionary retention of information in the antisense strands of natural DNA/RNA sequences. In particular, we show that the genetic code exhibits, beyond the neutral replacement patterns of amino acid substitutions, optimal properties by favoring simultaneous evolution of proteins encoded in DNA/RNA sense-antisense strands. This is borne out in the sense-antisense transformations of the codons of every amino acid which target amino acids physicochemically similar to each other. Moreover, silent mutations in the sense strand generate conservative ones in its antisense counterpart and vice versa. Coevolution of proteins coded by complementary strands is shown to be a definite possibility, a result which does not depend on any physical interaction between the coevolving proteins. Likewise, the degree to which the present genetic code is dedicated to evolutionary sense-antisense tolerance is demonstrated by comparison with many randomized codes. Double-strand coding is quantified from an information-theoretical point of view.     

EVOLUTION OF HOST-PARASITE DIVERSITY

Hosts and parasites often have extensive genetic diversity for resistance and virulence (host range). Qualitative diversity occurs when the success of attack is an all-or-nothing response that varies according to the genotypes of the host and parasite. Quantitative diversity occurs when the success of attack is a graded response that depends on additive genetic variation in the host and parasite. Community diversity occurs when parasites vary in the success with which they can attack different host species, leading to a mixture of specialists and generalists. I developed a series of models that classify components of host-parasite interactions according to whether they cause stabilizing or disruptive selection for resistance and virulence. Stabilizing selection reduces diversity by favoring a single optimal phenotype. Disruptive selection creates diversity by favoring a mixture of widely separated phenotypes. The evolution of maximal resistance and virulence are opposed by one of three forces: metabolic costs, frequency dependence, or negative genetic correlations among beneficial traits. The models predict that qualitatively inherited resistance and virulence traits typically cause greater diversity than quantitatively inherited traits. However, each natural system is composed of many stabilizing factors that reduce diversity and disruptive factors that promote diversity. I advocate a style of modeling in which families of related assumptions are compared by their equilibrium properties, and general conclusions from equilibrium properties are tested by complete dynamical analysis. The comparison among models highlights the need for empirical studies that compare levels of diversity among related host-parasite systems.     

On choice of substrate and habitat in bdelzoid rotifers

Information on the distributions of 77 bdelloid rotifers from diverse waters in south and central Sweden was analyzed to reveal their relationships to substrate and habitat. Only two species were reported from plankton, both in low frequency. An artificial substrate, white cotton, was utilized only by few bdelloids, mainly by species with eyes. Only one species occurred at higher frequency on the saprobic substrate Sphaerotilus. Most bdelloids prefer environments rich in oxygen, but some species may be found in soft-bottom sediments. Several species dwell preferentially in diverse habitats of bogs. Some bdelloids have an exceptionally broad ecological range, but even for these is it possible to distinguish a pattern of preference and avoidance.     

Diatom ecology in the phyllosphere of the common duckweed (Lemna minor L.)

Epiphyton associated with thick, floating mats of the common duckweed (Lemna minor L.) was studied at four sites in western Canada between 1985 and 1988. Maximum epiphyton abundance generally occurred in spring as biomass of the duckweed mat was increasing. Epiphytic biomass was low during summer and increased at some sites in autumn with mat decomposition. The community was composed mostly of diatoms and, during summer, photosynthetic bacteria. Species richness of the diatom flora was low, suggesting that duckweed mats are environments to which few species are adapted. Photosynthesis - irradiance curves indicated that duckweed epiphyton was not adapted to low light levels that occurred in the mat (< 1 % of ambient), suggesting they may survive via other means of nutrition. The mat phyllosphere was also characterized by wide spatial and temporal variation in temperature, and sharp vertical profiles of dissolved oxygen and nutrients.     

Quaternary and recent Lamprothamnium groves (Charophyta) from Argentina

Only recently have extant Lamprothamnium species been reported from the American continent. L. succinctum (A. Br. in Asch.) R. D. W. was found in Lago Titicaca, Bolivia and L. haesseliae Dont. en Laguna Luro and Laguna La Salada, Argentina.Fossil gyrogonites of L. succinctum and L. haesseliae, however, are here reported to be widely distributed in Quaternary sediments of Argentina, associated with other charophytes, ostracods and foraminiferans. Localities include Laguna del Siasgo, Laguna Salada Grande, Laguna Mar Chiquita, Laguna La Amarga and Salina del Bebedero. Lamprothamnium is a genus that prefers shallow, alkaline, hyposaline to mesosaline environments. Analysis of the characteristics of Laguna La Salada contributes information on the factors that influence the distribution of the genus.The morphology characteristics of the gyrogonites and oospores of L. haesseliae and the gyrogonites of L. succinctum are described. The use of Lamprothamnium as a biomarker and its application in the reconstruction of Quaternary saline environments are also discussed.     

The dynamics and retention of phosphorus in lentic and lotic patches of two river-lake systems

Two river-lake systems in a mosaic, lowland postglacial landscape (Masurian and Suwalskie Lakelands, northeastern Poland) of different length and flow were studied. The concentration of total and dissolved phosphorus (in water and in seston) and the retention of these two forms of P were analysed at several hydrological occasions in lakes of various morphometry and trophy, and in several stream fragments. The concentration and retention is equally highly variable in lake (lentic patches) and stream fragments (lotic patches) of the system. The polluted stream fragments at all occassions as well as the lakes in summer, are mainly exporting phoshorus. The patches which act as sources occur alternatively with patches which are P-sinks. This makes the whole system more or less balanced with respect to P movement in the landscape.     

On the ecology of Dicranophoridae (Rotifera)

Information on the distribution of 59 dicranophorid rotifers from diverse habitats in south and central Sweden was analyzed to reveal their relationships to their substrate. They were mainly frequenting macrophytic vegetation. Even some species which have previously been regarded as psammobionts were mostly or only found on periphytic substrates. Like other raptorial predators, dicranophorids have a very broad ecological range.     

东方蝾螈繁殖生态的研究

本文报道东方蝾螈(Cynops orientalis)的繁殖生态,内容有精巢分叶、精子形态、怀卵量、性征、性比、求偶、交配、纳精、产卵及孵化等,并对产卵场中性比的周年变化、精包形态、精子存活力及与蓝尾蝾螈的种间差异进行了观察和讨论。     

Soils in warmer and less developed countries have less micronutrients globally

Soil micronutrients are capital for the delivery of ecosystem functioning and food provision worldwide. Yet, despite their importance, the global biogeography and ecological drivers of soil micronutrients remain virtually unknown, limiting our capacity to anticipate abrupt unexpected changes in soil micronutrients in the face of climate change. Here, we analyzed >1300 topsoil samples to examine the global distribution of six metallic micronutrients (Cu, Fe, Mn, Zn, Co and Ni) across all continents, climates and vegetation types. We found that warmer arid and tropical ecosystems, present in the least developed countries, sustain the lowest contents of multiple soil micronutrients. We further provide evidence that temperature increases may potentially result in abrupt and simultaneous reductions in the content of multiple soil micronutrients when a temperature threshold of 12–14°C is crossed, which may be occurring on 3% of the planet over the next century. Altogether, our findings provide fundamental understanding of the global distribution of soil micronutrients, with direct implications for the maintenance of ecosystem functioning, rangeland management and food production in the warmest and poorest regions of the planet.