氨氧化古菌的生态学研究进展

上百年来细菌一直被认为是地球氨氧化过程的主要驱动者,2005年海洋中分离到迄今唯一的非极端环境泉古菌,发现其氧化氨态氮获得能源生长,是氨氧化古菌。氨氧化古菌和细菌对地球氨氧化过程的相对贡献率,是目前全球氮循环研究最重要的微生物生态学问题之一。已有的证据表明古菌在海洋氨氧化过程中发挥了重要作用,细菌则是土壤氨氧化过程的主要驱动者。本文重点探讨了原位自然环境下氨氧化古菌的生态学研究进展。     

New pathways for ammonia conversion in soil and aquatic systems

Ammonia conversion processes are essential for most soil and aquatic systems. Under natural conditions, the many possible reactions are difficult to analyze. For example, nitrification and denitrification have long been regarded as separate phenomena performed by different groups of bacteria in segregated areas of soils, sediments or aquatic systems sequentially in time. It has now been established that strict segregation in place and time of the two processes is not necessary and that both denitrifiers and nitrifiers have versatile metabolisms. However, the rates described for aerobic denitrifiers are very low compared to the rates observed under anoxic conditions. Also the rates of nitrifier denitrification are quite low, indicating that these conversions may not play an important role under natural conditions. In addition, these processes often result in the emission of quite large amounts of undesirable products, NO and N₂O. Heterotrophic nitrification might be of relevance for systems, that contain a high carbon to nitrogen ratio. Recently, a novel process (Anammox) has been discovered in which ammonium serves as the electron donor for denitrification of nitrite into dinitrogen gas. ¹⁵N labeling studies showed that hydrazine and hydroxylamine were important intermediates in this process. Enrichment cultures on ammonium, nitrite and bicarbonate resulted in the dominance of one morphotypical microorganism. The growth rate of the cultures is extremely low (doubling time 11 days), but the affinity for ammonium and nitrite and the conversion rates (9.2 10^–4 mol kg^–1 s^–1) are quite high. Some of the reported high nitrogen losses in soil and aquatic systems might be attributed to anaerobic ammonium oxidation. In addition, this conversion offers new opportunities for nitrogen removal, when it is combined with recently developed processes for partial nitrification.     

A study on the mechanism of the vanadate-dependent NADH oxidation

The mechanism of the vanadate (V(_v))-dependent oxidation of NADH was different in phosphate buffers and in phosphate-free media. In phosphate-free media (aqueous medium or HEPES buffer) the vanadyl (V(_v)) generated by the direct V(_v)-dependent oxidation of NADH formed a complex with V(_v). In phosphate buffers V(_v) autoxidized instead of forming a complex with V(_v). The generated superoxide radical (O₂⁻) initiated, in turn, a high-rate free radical chain oxidation of NADH. Phosphate did not stimulate the V(_v)-dependent NADH oxidation catalyzed by O₂⁻-generating systems. Monovanadate proved to be a stronger catalyzer of NADH oxidation as compared to polyvanadate.     

水分胁迫下荔枝叶片过氧化物酶和IAA氧化酶活性的变化

以适应山地栽培的抗旱性较强的东刘1号和适应河边栽培的抗旱性较弱的陈紫2年生荔枝（Litchi chinensis Sonn.)实生苗为试验材料,研究了水分胁迫下叶片细胞胞质,与（细胞）壁以离子键结合和壁以共价键结合的过氧化的酶（POD）和IAA氧化酶活性的变化。结果表明：在叶片中POD主要是以与壁以离子键结合的POD存在,占总活性的51．15％－52．15％,其次是细胞胞质POD,占44．20％－44．74％,与壁以共价键结合的POD活性最低,仅占3．44％－3．65％。与POD不同,IAA氧化酶绝大多数存在于细胞胞质中,占总活性的88．93％－89．29％,其次是少量的与壁以离子键结合的IAA氧化酶,占7．32％－7．63％,与壁以共价键结合的IAA氧化酶活性最低,仅占3．39％－3．44％;2个品种间差异不明显。水分胁迫下,叶片细胞胞质以及与壁以离子键和壁以共价键结合的POD和IAA氧化酶（比）活性均上升,抗旱笥较强的品种上升的幅度均大于抗旱性较弱的品种。     

不同浓度外源IAA处理对杉木茎部基因表达的影响

为了揭示吲哚-3-乙酸(Indole-3-acetic acid,IAA)参与杉木木材发育调控的遗传机制,文章分别以0、3mg.IAA/g.lanolin处理不同阶段的杉木截顶茎秆作为驱动方(Driver)和测试方(Tester),利用抑制消减杂交技术(Suppression substractive hybridization,SSH),对其中差异表达的目的基因进行了分离和克隆。共获得332个Unigenes,其潜在的功能分别涉及到细胞组织和生物合成、发育进程调控、电子传递、逆境应答以及信号传导等方面;进一步地表达鉴定发现ClHIRA、ClPGY1和ClARF4等集中于茎部近轴区域表达的基因,能够积极地响应外源IAA刺激的维管形成层分裂和管胞分化活动;而ClSMP1、ClTCTP1和ClTRN2等集中于茎部远轴区域表达的基因,则在转录水平上对外源IAA的处理水平及近轴次生维管的发育变化表现出负相关的关系。这一结果表明特异性定位的发育基因对木材形成组织中内源IAA水平变化的差异性识别和响应很可能是生长素参与林木维管形成层次生发育调节的重要分子机制。     

Purification and characterization of a NAD+-dependent secondary alcohol dehydrogenase from propane-grown Rhodococcus rhodochrous PNKb1

NAD⁺-linked primary and secondary alcohol dehydrogenase activity was detected in cell-free extracts of propane-grown Rhodococcus rhodochrous PNKb1. One enzyme was purified to homogeneity using a two-step procedure involving DEAE-cellulose and NAD-agarose chromatography and this exhibited both primary and secondary NAD⁺-linked alcohol dehydrogenase activity. The Mr of the enzyme was approximately 86,000 with subunits of Mr 42,000. The enzyme exhibited broad substrate specificity, oxidizing a range of short-chain primary and secondary alcohols (C₂–C₈) and representative cyclic and aromatic alcohols. The pH optimum was 10. At pH 6.5, in the presence of NADH, the enzyme catalysed the reduction of ketones to alcohols. The K _m values for propan-1-ol, propan-2-ol and NAD were 12 mM, 18 mM and 0.057 mM respectively. The enzyme was inhibited by metal-complexing agents and iodoacetate. The properties of this enzyme were compared with similar enzymes in the current literature, and were found to be significantly different from those thus far described. It is likely that this enzyme plays a major role in the assimilation of propane by R. rhodochrous PNKb1.Abbreviations HPLC high performance liquid chromatography - DEAE diethyl amino ethyl - IEF isoelectrofocusing - NTG nitrosoguanidine - SDS-PAGE sodium dodecylsulphate polyacrylamide gel electrophoresis - pI isoelectric point     

Broad-spectrum antioxidant peptides derived from His residue-containing sequences present in human paraoxonase 1

Hydroxyl or peroxyl radicals and hypochlorous acid (HOCl) are known to cause the oxidation of lipoproteins. Here, we examined Cu²⁺-binding property of paraoxonase 1 (PON1), and antioxidant actions of peptides, resembling His residue-containing sequences in PON1, against oxidations by Cu²⁺, peroxyl radicals or HOCl. When Cu²⁺-binding property of PON1 was examined spectrophotometrically, the maximal Cu²⁺ binding was achieved at 1:1 molar ratio of PON1: Cu²⁺. Additionally, Cu²⁺-catalyzed oxidative inactivation of PON1 was prevented by Ca²⁺-depleted PON1 at 1:1 ratio, but not diethylpyrocarbonate (DEPC)-modified PON1, suggesting the participation of His residue in Cu²⁺-binding. When His-containing peptides were examined for antioxidant actions, those with either His residue at N-terminal position 2 or 3, or His-Pro sequence at C-terminal remarkably prevented Cu²⁺-mediated low density lipoprotein (LDL) oxidation and PON1 inactivation. Especially, FHKALY, FHKY or NHP efficiently prevented Cu²⁺-induced LDL oxidation (24 h), indicating a tight binding of Cu²⁺ by peptides. In support of this, the peptide/Cu²⁺ complexes exhibited a superoxide-scavenging activity. Separately, in oxidations by 2,2'-azobis-2-amidinopropane hydrochloride or HOCl, the presence of Tyrosine (Tyr) or Cysteine (Cys) residue markedly enhanced antioxidant action of His-containing peptides. These results indicate that His-containing peptides with Tys or Cys residues correspond to broad spectrum antioxidants in oxidation models employing Cu²⁺, 2,2'-azobis-2-amidinopropane hydrochloride (AAPH) or HOCl.     

Sulfide oxidation at halo-alkaline conditions in a fed-batch bioreactor

A biotechnological process is described to remove hydrogen sulfide (H(2)S) from high-pressure natural gas and sour gases produced in the petrochemical industry. The process operates at halo-alkaline conditions and combines an aerobic sulfide-oxidizing reactor with an anaerobic sulfate (SO(4) (2-)) and thiosulfate (S(2)O(3) (2-)) reducing reactor. The feasibility of biological H(2)S oxidation at pH around 10 and total sodium concentration of 2 mol L(-1) was studied in gas-lift bioreactors, using halo-alkaliphilic sulfur-oxidizing bacteria (HA-SOB). Reactor operation at different oxygen to sulfide (O(2):H(2)S) supply ratios resulted in a stable low redox potential that was directly related with the polysulfide (S(x) (2-)) and total sulfide concentration in the bioreactor. Selectivity for SO(4) (2-) formation decreased with increasing S(x) (2-) and total sulfide concentrations. At total sulfide concentrations above 0.25 mmol L(-1), selectivity for SO(4) (2-) formation approached zero and the end products of H(2)S oxidation were elemental sulfur (S(0)) and S(2)O(3) (2-). Maximum selectivity for S(0) formation (83.3+/-0.7%) during stable reactor operation was obtained at a molar O(2):H(2)S supply ratio of 0.65. Under these conditions, intermediary S(x) (2-) plays a major role in the process. Instead of dissolved sulfide (HS(-)), S(x) (2-) seemed to be the most important electron donor for HA-SOB under S(0) producing conditions. In addition, abiotic oxidation of S(x) (2-) was the main cause of undesirable formation of S(2)O(3) (2-). The observed biomass growth yield under SO(4) (2-) producing conditions was 0.86 g N mol(-1) H(2)S. When selectivity for SO(4) (2-) formation was below 5%, almost no biomass growth was observed.     

Mg2+对米曲霉HMP-F28所产α-，β-CPA的调控作用

在米曲霉HMP-F28所产CPA(环匹阿尼酸)类化合物中,β-CPA是α-CPA的生物合成前体化合物,因此β-CPA的含量很低,而α-CPA是主要代谢产物。在研究HMP-F28所产CPA类代谢产物的调控过程中,采用SPE-LC-MS方法建立了一个对HMP-F28所产CPA类代谢物的快速定性分析方法。在此基础上,发现不同浓度的Mg²⁺可调控α-CPA和β-CPA相对含量,高浓度Mg²⁺（320 mmol/L）可使菌株显著提高生物合成中间体β-CPA的产量。由于β-CPA在结构上较α-CPA与IAA拮抗剂hypaphorine更类似,因此本研究为进一步研究其作为IAA拮抗剂诱导植物免疫反应的活性提供参考。     

外源褪黑素对干旱胁迫下黑麦草和苜蓿抗氧化能力及养分吸收的影响

以黑麦草和苜蓿为对象,分别叶面喷施和根施100 μmol·L^-1的褪黑素溶液,在干旱胁迫下测定了生物量、丙二醛(MDA)含量、相对电导率、超氧化物歧化酶(SOD)、过氧化物酶(POD)和过氧化氢酶(CAT)活性、养分含量(有机碳C、全氮N、全磷P)等指标,研究外源褪黑素对干旱胁迫下植物抗氧化能力及养分吸收的影响。结果表明: 干旱胁迫下,黑麦草和苜蓿的地上、地下生物量显著降低,外施褪黑素能够有效缓解干旱胁迫对黑麦草和苜蓿生长的抑制作用,叶面喷施和根施褪黑素使干旱胁迫下黑麦草的生物量分别增加14.5%和29.6%,苜蓿的生物量分别增加36.6%和49.1%。干旱胁迫下,黑麦草的SOD、POD活性和苜蓿的SOD活性显著降低,外施褪黑素显著提高黑麦草和苜蓿的SOD、POD、CAT活性,减少叶片中MDA的积累,使叶片相对电导率显著下降,抗氧化能力显著提高。干旱和外施褪黑素对黑麦草和苜蓿有机碳含量无显著影响。干旱胁迫下,黑麦草叶片和根中的N、P含量以及苜蓿根中的N含量降低,外施褪黑素提高黑麦草和苜蓿根和叶片中的N、P含量,这表明褪黑素对干旱胁迫下黑麦草和苜蓿的养分吸收有一定的调节作用。施用褪黑素不仅能改善植物的抗氧化能力,还能调节养分吸收以增强植物对干旱胁迫的适应性,而且叶面喷施褪黑素效果好于根施。