Community evolution increases plant productivity at low diversity

Species extinctions from local communities negatively affect ecosystem functioning. Ecological mechanisms underlying these impacts are well studied, but the role of evolutionary processes is rarely assessed. Using a long‐term field experiment, we tested whether natural selection in plant communities increased biodiversity effects on productivity. We re‐assembled communities with 8‐year co‐selection history adjacent to communities with identical species composition but no history of co‐selection (‘naïve communities’). Monocultures, and in particular mixtures of two to four co‐selected species, were more productive than their corresponding naïve communities over 4 years in soils with or without co‐selected microbial communities. At the highest diversity level of eight plant species, no such differences were observed. Our findings suggest that plant community evolution can lead to rapid increases in ecosystem functioning at low diversity but may take longer at high diversity. This effect was not modified by treatments simulating co‐evolutionary processes between plants and soil organisms.     

Antibacterial and antifungal activities of pyroligneous acid from wood of Eucalyptus urograndis and Mimosa tenuiflora

Aims

This work aimed to evaluate the antibacterial and antifungal activities of two types of pyroligneous acid (PA) obtained from slow pyrolysis of wood of Mimosa tenuiflora and of a hybrid of Eucalyptus urophylla × Eucalyptus grandis.

Methods and Results

Wood wedges were carbonized on a heating rate of 1·25°C min^?1 until 450°C. Pyrolysis smoke was trapped and condensed to yield liquid products. Crude pyrolysis liquids were bidistilled under 5 mmHg vacuum yielding purified PA. Multi‐antibiotic‐resistant strains of Escherichia coli, Pseudomonas aeruginosa (ATCC 27853) and Staphylococcus aureus (ATCC 25923) had their sensitivity to PA evaluated using agar diffusion test. Two yeasts were evaluated as well, Candida albicans (ATCC 10231) and Cryptococcus neoformans. GC‐MS analysis of both PAs was carried out to obtain their chemical composition. Regression analysis was performed, and models were adjusted, with diameter of inhibition halos and PA concentration (100, 50 and 20%) as parameters. Identity of regression models and equality of parameters in polynomial orthogonal equations were verified. Inhibition halos were observed in the range 15–25 mm of diameter.

Conclusions

All micro‐organisms were inhibited by both types of PA even in the lowest concentration of 20%.

Significance and Impact of the Study

The feasibility of the usage of PAs produced with wood species planted in large scale in Brazil was evident and the real potential as a basis to produce natural antibacterial and antifungal agents, with real possibility to be used in veterinary and zootechnical applications.     

Exploring spatio-temporal patterns of plankton diversity and community structure as correlates of water quality in a tropical stream

Ecology of plankton in the downstream reaches of Kaduna River, Zungeru, Niger state, Nigeria was investigated between April and August 2015. Plankton and surface water samples were collected monthly from three stations for analysis of plankton diversity and physico-chemical parameters respectively. Station 1 is relatively unperturbed station located at the outskirts of Zungeru town, station 2 with moderate human activity located in Zungeru town while station 3 with minimal level of anthropogenic activities was located in Wushishi town about 7 km from station 2. The result revealed that the minimum and maximum values for pH water temperature, air temperature, conductivity, dissolved oxygen (DO) biochemical oxygen demand (BOD), phosphate, Nitrate, and secchi disc transparency were 5.38–6.79, 25–31 °C, 26–31 °C, 32–72 μs/cm, 3.50–8.20 mg/l, 1.00–5.00 mg/l, 0.06–1.13 mg/l 0.44–1.31 mg/l, 39.140 cm respectively. A total of 26 species of zooplankton and 24 species of phytoplankton were encountered in the study. The highest number of plankton (20 taxa) was recorded at station 2 while station 1 with 18 taxa and station 3 with 13 representative taxa. For zooplankton, the highest number of taxa was recorded at station 1 (20 taxa), followed by station 3 (14 taxa) and 10 taxa in station 2 were identified. Copepoda of the order cyclopidae dominated all the three stations while Bacillariophyta dominated the three stations for phytoplankton diversity. Canonical correspondence analysis (CCA) ordination was used to determine phytoplankton and zooplankton abundance in relation to the physico-chemical parameters. Nitrate, phosphate and dissolved oxygen had over riding influence on the distribution of the plankton in the water body which indicate that the river is still very productive in terms of providing starter food organisms for higher aquatic life. However, care should be taken to protect the river from further deterioration due to various degrees of human activities.     

Comparative analysis of microbial diversity and bacterial seedling disease‐suppressive activity in organic‐farmed and standardized commercial conventional soils for rice nursery cultivation

The outbreak of rice plant diseases can be effectively suppressed in organic farming systems. However, the mechanisms of disease suppression by organic farming systems are not well understood. When Burkholderia‐infected rice seeds were sown and cultivated on nine organic‐farmed soils which were supplied by nine independent organic rice farmers or standardized commercial conventional soils, the emergence of bacterial seedling diseases was suppressed to equivalent degrees in nine organic‐farmed soils, whereas the diseases occurred in two commercial conventional soils. In any organic or commercial conventional soil sown with healthy rice seeds as a control, the diseases did not appear. Upon physicochemical analysis of the nine organic‐farmed soils, component common to these organic‐farmed soils seemed to not be directly associated with disease‐suppressive activity. However, microbiome analyses indicated that the bacterial population in these nine organic‐farmed soils was more diverse than those in commercial conventional soils. Intriguingly, the diverse bacterial population structures of organic‐farmed soils were preserved after irrigating and sowing rice seeds, but that of commercial conventional soils was clearly changed by them. Thus, organic‐farmed soils seem to maintain robust bacterial populations despite the irrigation and seedling growth. Indeed, pathogenic Burkholderia in infected rice seeds also did not proliferate in the seedling grown on organic‐farmed soils. Taken together, the common feature of organic‐farmed soils might be the correlation between bacterial seedling disease‐suppressive activity and higher robustness of the diversified microbiome.     

Marine natural pigments as potential sources for therapeutic applications

In recent years, marine natural pigments have emerged as a powerful alternative in the various fields of food, cosmetic, and pharmaceutical industries because of their excellent biocompatibility, bioavailability, safety, and stability. Marine organisms are recognized as a rich source of natural pigments such as chlorophylls, carotenoids, and phycobiliproteins. Numerous studies have shown that marine natural pigments have considerable medicinal potential and promising applications in human health. In this review, we summarize the marine natural pigments as potential sources for therapeutic applications, including: antioxidant, anticancer, antiangiogenic, anti-obesity, anti-inflammatory activities, drug delivery, photothermal therapy (PTT), photodynamic therapy (PDT), photoacoustic imaging (PAI), and wound healing. Marine natural pigments will offer a better platform for future theranostic applications.     

From birth to christening

A brief history of comparative studies of nucleic acids for systematic purposes is given. These studies were initiated by a group of Moscow State University scientists headed by A. N. Belozersky. Based mostly on comparative DNA studies, some main dogmas of a new branch of systematics were gradually developed. In Russia, this new branch of systematics is called "genosystematics". Some of the main results obtained by genosystematics since its birth (1957) and up to its "christening" (1974) are described.     

Do we need many genes for phylogenetic inference?

Fifty-six nuclear protein coding genes from Taxonomically Broad EST Database and other databases were selected for phylogenomic-based examination of alternative phylogenetic hypotheses concerning intergroup relationship between multicellular animals (Metazoa) and other representatives of Opisthokonta. The results of this work support sister group relationship between Metazoa and Choanoflagellata. Both of these groups form the taxon Holozoa along with the monophyletic Ichthyosporea or Mesomycetozoea (a group that includes Amoebidium parasiticum, Sphaeroforma arctica, and Capsaspora owczarzaki). These phylogenetic hypotheses receive high statistical support both when utilizing whole alignment and when only 5000 randomly selected alignment positions are used. The presented results suggest subdivision of Fungi into Eumycota and lower fungi, Chytridiomycota. The latter form a monophyletic group that comprises Chytridiales+Spizellomycetales+Blastocladiales (Batrachochytrium, Spizellomyces, Allomyces, Blastocladiella), contrary to the earlier reports based on the analysis of 18S rRNA and a limited set of protein coding genes. The phylogenetic distribution of genes coding for a ubiquitin-fused ribosomal protein S30 implies at least three independent cases of gene fusion: in the ancestors of Holozoa, in heterotrophic Heterokonta (Oomycetes and Blastocystis) and in the ancestors of Cryptophyta and Glaucophyta. Ubiquitin-like sequences fused with ribosomal protein S30 outside of Holozoa are not FUBI orthologs. Two independent events of FUBI replacement by the ubiquitin sequence were detected in the lineage of C. owczarzaki and in the monophyletic group of nematode worms Tylenchomorpha+Cephalobidae. Bursaphelenchus xylophilus (Aphelenchoidoidea) retains a state typical of the rest of the Metazoa. The data emphasize the fact that the reliability of phylogenetic reconstructions depends on the number of analyzed genes to a lesser extent than on our ability to recognize reconstruction artifacts.     

Identification of iron-regulated outer membrane proteins in uropathogenic Proteus mirabilis and its relationship with heme uptake

The effect of iron deprivation on the expression of outer membrane proteins and the ability to use heme as an iron source by uropathogenic Proteus mirabilis , Pr 6515, was studied. Examination of iron-restricted bacteria showed three outer membrane proteins ranging from 66 to 75 kDa to be affected by iron restriction, as well as a newly expressed 64-kDa protein. These proteins were induced within 15 minutes of iron-deprivation. The strain grew in the presence of ferric citrate, hemin and hemoglobin as iron sources, but could not use transferrin, lactoferrin or siderophores from exogenous sources. The 64- and 66-kDa proteins showed hemin-binding activity by affinity chromatography, and both reacted in Western blots with sera from mice transurethrally infected with the same strain. We suggest that P. mirabilis expresses iron-regulated outer membrane proteins that could be involved in heme uptake and may have a role in pathogenesis.     

Pico‐, Nano‐, Microplankton Abundance and Primary Productivity in a Eutrophic Coastal Area of the Aegean Sea,Mediterranean

Primary productivity, pico‐, nano‐, microplankton and key environmental factors were studied in a eutrophic coastal area of the Aegean Sea during the winter – spring period. Primary productivity reached high values and showed similar trends of change to those of nanophytoplankton abundance. Nano‐ and microplankton cell densities showed high variability while picoplankton abundance was kept relatively stable. Diatoms dominated nanophytoplankton for most of the winter – spring period while a shift to dinoflagellates was initiated with the development of thermal stratification in late spring. Ciliates and heterotrophic dinoflagellates reached high densities in contrast to heterotrophic nanoflagellates. Our results emphasize the close relation between grazer densities and bacteria, cyanobacteria and nanoplanktic algal changes in this eutrophic coastal area of the Mediterranean.