Selectively bred oysters can alter their biomineralization pathways,promoting resilience to environmental acidification

Commercial shellfish aquaculture is vulnerable to the impacts of ocean acidification driven by increasing carbon dioxide (CO₂) absorption by the ocean as well as to coastal acidification driven by land run off and rising sea level. These drivers of environmental acidification have deleterious effects on biomineralization. We investigated shell biomineralization of selectively bred and wild‐type families of the Sydney rock oyster Saccostrea glomerata in a study of oysters being farmed in estuaries at aquaculture leases differing in environmental acidification. The contrasting estuarine pH regimes enabled us to determine the mechanisms of shell growth and the vulnerability of this species to contemporary environmental acidification. Determination of the source of carbon, the mechanism of carbon uptake and use of carbon in biomineral formation are key to understanding the vulnerability of shellfish aquaculture to contemporary and future environmental acidification. We, therefore, characterized the crystallography and carbon uptake in the shells of S. glomerata, resident in habitats subjected to coastal acidification, using high‐resolution electron backscatter diffraction and carbon isotope analyses (as δ¹³C). We show that oyster families selectively bred for fast growth and families selected for disease resistance can alter their mechanisms of calcite crystal biomineralization, promoting resilience to acidification. The responses of S. glomerata to acidification in their estuarine habitat provide key insights into mechanisms of mollusc shell growth under future climate change conditions. Importantly, we show that selective breeding in oysters is likely to be an important global mitigation strategy for sustainable shellfish aquaculture to withstand future climate‐driven change to habitat acidification.     

Landscape genetic structure of Scirpus mariqueter reveals a putatively adaptive differentiation under strong gene flow in estuaries

Estuarine organisms grow in highly heterogeneous habitats, and their genetic differentiation is driven by selective and neutral processes as well as population colonization history. However, the relative importance of the processes that underlie genetic structure is still puzzling. Scirpus mariqueter is a perennial grass almost limited in the Changjiang River estuary and its adjacent Qiantang River estuary. Here, using amplified fragment length polymorphism (AFLP), a moderate‐high level of genetic differentiation among populations (range F_ST: 0.0310–0.3325) was showed despite large ongoing dispersal. FLOCK assigned all individuals to 13 clusters and revealed a complex genetic structure. Some genetic clusters were limited in peripheries compared with very mixing constitution in center populations, suggesting local adaptation was more likely to occur in peripheral populations. 21 candidate outliers under positive selection were detected, and further, the differentiation patterns correlated with geographic distance, salinity difference, and colonization history were analyzed with or without the outliers. Combined results of AMOVA and IBD based on different dataset, it was found that the effects of geographic distance and population colonization history on isolation seemed to be promoted by divergent selection. However, none‐liner IBE pattern indicates the effects of salinity were overwhelmed by spatial distance or other ecological processes in certain areas and also suggests that salinity was not the only selective factor driving population differentiation. These results together indicate that geographic distance, salinity difference, and colonization history co‐contributed in shaping the genetic structure of S. mariqueter and that their relative importance was correlated with spatial scale and environment gradient.     

Macrobenthic Distribution within the Sediment along an Estuarine Salinity Gradient

The distribution of the macrobenthic infaunal community within the upper 25 cm of the sediment was studied at 16 stations in the lower Chesapeake Bay. Stations were located from the tidal freshwater to the polyhaline zone of major tributaries (James, York and Rappahannock Rivers) and in the polyhaline portion of the lower bay mainstem. Profiles for total number of individuals, total ash-free dry weight biomass and species encountered with depth were calculated. Except for the deep dwelling bivalve, Macoma balthica, tributary macrobenthic communities had a shallow depth distribution compared to the mainstem sites which were found in generally coarser sediments in the higher salinity region of the estuary.     

Spatial and temporal changes in salt marsh distribution in the Dee estuary,NW England,determined from aerial photographs

Vegetation changes in salt marsh communities of the Dee estuary, northwest England, were analysed with a combination of remote sensing techniques using data dating back to the 1950s. The distribution of communities in 1997 was classified using Airborne Thematic Mapper data and used to develop a methodology for the analysis of black and white photographs of the marsh. These methods were then applied retrogressively to a time sequence of monochrome photographs running from 1955 to 1975. At the apex of the salt marshes on the English shore of the Dee estuary, the marsh expanded dramatically to 1975, and consisted predominantly of pioneer and low marsh vegetation types. Between 1975 and 1997, however, there was only a slight increase in salt marsh area, but with an increase in mid and high marsh vegetation, replacing pioneer marsh. In a second area of the salt marsh on the English shore, a different pattern of salt marsh expansion was observed. The area occupied by marsh continued to increase right up to 1997, with extensive pioneer vegetation suggesting a process of continuing expansion. However, the pattern of marsh colonisation appeared to be different in 1997 compared to 1975. The significance of the changes in salt marsh distribution within the Dee estuary are discussed in relation to the historical pattern of salt marsh colonisation, the importance of Spartina anglica in the process and the implications for strategic management of the estuarine resources.     

Regional population structure of a widely introduced estuarine invertebrate: Nematostella vectensis Stephenson in New England

Nematostella vectensis is an infaunal anemone occurring in salt marshes, lagoons and other estuarine habitats in North America and the United Kingdom. Although it is considered rare and receives protection in England, it is widely distributed and abundant in the United States, particularly along the Atlantic coast. Recent studies suggest that both anthropogenic dispersal and reproductive plasticity may significantly influence the genetic structure of N. vectensis populations. Amplified fragment length polymorphism (AFLP) fingerprinting of individuals from nine populations in the northeastern United States indicates that stable populations are maintained by both asexual and sexual reproduction; in some cases asexually reproducing lineages exist within sexually reproducing populations. F statistics reveal extraordinarily high degrees of genetic differentiation between populations, even those separated by very short distances (less than 100 m). Genetic distances show little to no correlation with geographical distances, consistent with a role for sporadic, geographically discontinuous dispersal coupled with limited gene flow. No single genotype was found at more than one site, despite apparent homogeneity of habitat. In contrast with reported genotypic distributions for Nematostella in the United Kingdom, where a single clonal genotype dominates at multiple sites through southern England, our data thus fail to support the hypothesis of a general-purpose genotype in the northeastern United States. However, they are consistent with important roles for reproductive plasticity, sporadic introductions and complex local population dynamics in determining the global and regional distribution of this species.     

Biodiversity of aquatic gastropods in the Mont St-Michel basin (France) in relation to salinity and drying of habitats

Seventy-seven polder and marsh stations were sampled for aquatic and riparian gastropods in the terrestrial basin of Mont St-Michel from March 1994–March 1995 and during a drought in 1996. In addition, four ponds with riparian coppice (bocage) were investigated. Twenty-one stations, mostly in polders, lacked snails; high values of conductivity, and by implication salinity, appeared to make the habitats unfavourable. Only the euryhaline hydrobid Potamopyrgus antipodarum and the amphibious lymnaeid Lymnaea truncatula survived in areas of high conductivity. In associated lagoons, the maximum level of salinity tolerated by freshwater gastropods was 35. Of the 14 species of gastropods collected, Lymnaea peregra and Anisus leucostoma were the most abundant. Stations had 1–7 species and the average gastropod species richness was 3.32 (±1.67). The canals that were the most susceptible to drying had a community of desiccation-resistant species including L. truncatula, Aplexa hypnorum, A. leucostoma and L. peregra. It appears that gastropod assemblages in the terrestrial basin of Mont St-Michel have achieved their current diversity by surviving strong ecological constraints.     

Seasonal change in the proportion of bacterial and phytoplankton production along a salinity gradient in a shallow estuary

We intended to evaluate the relative contribution of primary production versus allochthonous carbon in the production of bacterial biomass in a mesotrophic estuary. Different spatial and temporal ranges were observed in the values of bacterioplankton biomass (31–273 g C l^–1) and production (0.1–16.0 g C l^–1 h^–1, 1.5–36.8 mg C m^–2 h^–1) as well as in phytoplankton abundance (50–1700 g C l^–1) and primary production (0.1–512.9 g C l^–1 h^–1, 1.5–512.9 mg C m^–2 h^–1). Bacterial specific growth rate (0.10–1.68 d^–1) during the year did not fluctuate as much as phytoplankton specific growth rate (0.02–0.74 d^–1). Along the salinity gradient and towards the inner estuary, bacterio- and phytoplankton biomass and production increased steadily both in the warm and cold seasons. The maximum geographical increase observed in these variables was 12 times more for the bacterial community and 8 times more for the phytoplankton community. The warm to cold season ratios of the biological variables varied geographically and according to these variables. The increase at the warm season achieved its maximum in the biomass production, particularly in the marine zone and at high tide (20 and 112 times higher in bacterial and phytoplankton production, respectively). The seasonal variation in specific growth rate was most noticeable in phytoplankton, with seasonal ratios of 3–26. The bacterial community of the marine zone responded positively – generating seasonal ratios of 1–13 in bacterial specific growth rate – to the strong warm season increment in phytoplankton growth rate in this zone. In the brackish water zone where even during the warm season allochthonous carbon accounted for 41% (on average) of the bacterial carbon demand, the seasonal ratio of bacterial specific growth rate varied from about 1 to 2. During the warm season, an average of 21% of the primary production was potentially sufficient to support the whole bacterial production. During the cold months, however, the total primary production would be either required or even insufficient to support bacterial production. The estuary turned then into a mostly heterotrophic system. However, the calculated annual production of biomass by bacterio- and phytoplankton in the whole ecosystem showed that auto- and heterotrophic production was balanced in this estuary.     

Is bacterioplankton production in the Ria de Aveiro influenced by salt marshes and bed sediment?

The contribution of potential export of materials from bottom sedimentsand salt marshes into the water column of a shallow estuarine system of Ria deAveiro to the observed high bacterial productivity in the mid section of thisestuary was evaluated. Vertical profiles of physical, chemical and bacterialvariables were studied in the marine and brackish water zones, and oftransversal profiles in the brackish zone only. Although the concentrations ofseston (17–241 mg l^–1), particulate organiccarbon (3–15.5 mg l^–1) and chlorophyll(1.2–7.0 g l^–1) varied widely, thevertical and transversal profiles were without much variation. Total bacterialnumber (0.2–8.5 × 10⁹ cellsl^–1) and the number of particle-attached bacteria(0.02–2.50 × 10⁹ cellsl^–1)along vertical and transversal profiles did not differ much, but the rate ofbacterial production (0.05–14.2 g C l^–1h^–1) and dissolved organic carbon concentration(6.0–69.2 mg l^–1) were frequently highernear the salt marsh margin at the brackish water transect. The increase inproductivity could not be associated with runoff of particulate matter butcoincided with the inputs of dissolved organic carbon. The results of verticaland transversal profiles point to a minor role of particulate matter additionsfrom the salt marsh area or from bed sediments.     

Characterization of aspartate transcarbamylase activity from gonads of the soft shell clam,Mya arenaria

Aspartate transcarbamylase (ATCase, EC 2.1.3.2) has been shown to be a good index of the reproductive cycle in marine molluscs. However, this enzyme has never been studied in the soft shell clam Mya arenaria. The characteristics of gonadal ATCase of the soft shell clam, Mya arenaria were therefore determined since we need powerful tools to assess the degree of effects of endocrine disruptors in this species at risk. Enzyme kinetic values observed at pH 8.3 were significantly lower than those measured at pH 9.4. The optimal conditions for the enzyme assays were reached in the presence of a 10 mM of substrate concentration and at pH 9.2 for 60 min at 37 °C. We have found that the enzyme was heat sensitive, markedly activated by DMSO and DMF, but no effect was observed with ethanol, ATP or CTP. However, clam ATCase activity was partly inhibited by the addition of CuSO₄ and PHMB to the medium, an inhibition that could be attributed to the presence of SH sites in cysteine residues localized in the catalytic site of this enzyme. All these results will be very useful in the near future to study the gametogenetic process of Mya arenaria, since little is known about the factors that control the physiological process of reproduction in this bivalve of ecological and economic importance. Studies of variations of the activity of aspartate transcarbamylase will also be useful as a potential biomarker to evaluate the disruption of gametogenesis in clams exposed to endocrine disruptors in situ.     

Changes in estuarine nematode communities following a decrease of organic pollution

The response of a nematode community to a decreasing organic matter loading was studied. Monthly observations were made at three stations at an intertidal brackish-water mudflat in the Ems estuary in 1980 (highly polluted), 1987 (moderately polluted) and 1993 (no significant pollution). Nematodes were identified and counted in the upper 1 cm of the sediment.The decrease of organic pollution was followed by an increase in species diversity, whereas numerical densities decreased. Diatom eating nematodes, being dominant under eutrophic conditions in 1980, decreased strongly, partly as a consequence of decreasing diatom standing stock. Eudiplogaster pararmatus, an indicator of organic enrichment, decreased strongly to disappear completely in 1993. Bonger's maturity index was used to describe the response of the nematode community. At 2 most polluted stations a strong response was observed from 1980 to 1987: a decrease of colonizer species. After 1987, although persister species increased, no further development towards a more natural succession type community occurred, probably due to the natural stress of the habitat (high mudflat, low salinities).