Exclusion of introduced deer increases size and seed production success in an island‐endemic plant species

The presence of extra‐local invaders, such as the southern California mule deer (Odocoileus hemionus) on Santa Catalina Island, may contribute to more selective and insidious effects within the unique ecosystems that have evolved in their absence. Studies at the species level may detect effects not noticed in broader, community level vegetation monitoring or help tease apart differences in the level of effect among the various ecological components of an invaded system. In this initial study, we measured the impacts of herbivory by mule deer, a species native to analogous habitats on the adjacent mainland, on size and seed production success for Crocanthemum greenei (island rush‐rose), a federally listed sub‐shrub that is not present on mainland California. We found deer exclusion resulted in an overall increase in stem measurement of 18.8 cm. Exclosure populations exhibited complete seed production success, whereas control populations showed significantly reduced success and exhibited complete failure within 58% of populations. These results show that the introduced mule deer on Santa Catalina Island are negatively affecting a federally threatened plant species. This strongly implies that the current deer management strategy is insufficient, if one of its goals is biodiversity and endemic species conservation.     

Forage availability for white-tailed deer following silvicultural treatments in hardwood forests

Closed-canopy upland hardwood stands often lack diverse understory structure and composition, limiting available nutrition for white-tailed deer (Odocoileus virginianus) as well as nesting and foraging structure for other wildlife. Various regeneration methods can positively influence understory development; however, non-commercial strategies are needed to improve available nutrition in many stands, as some contain timber that is not ready to harvest and others are owned by landowners who are not interested in harvesting timber. Applications of herbicide and prescribed fire have improved availability of food and cover for deer and other wildlife in pine (Pinus spp.) systems. However, this strategy has not been evaluated in hardwood systems. To evaluate the influence of fire and herbicide treatments on available deer forage in upland hardwood systems, we measured forage availability and calculated nutritional carrying capacity (NCC) at 14% crude protein mixed diet, following 7 silvicultural treatments, including controls, in 4 mixed upland hardwood stands July–September 2007 and 2008. We compared NCC among forest treatments and within 4 paired warm-season forage food plots to evaluate the usefulness of food plots in areas where forests are managed. Nutritional carrying capacity estimates (deer days/ha) were greatest following canopy reduction with prescribed fire treatments in both years. Understory herbicide application did not affect species composition or NCC 1 year or 2 years post-treatment. Production of forage plantings exceeded that of forest treatments both years with the exception of early-maturing soybeans and retention cut with fire 2 years post-treatment. We encourage land managers to use canopy reducing treatments and low-intensity prescribed fire to increase available nutrition and improve available cover where needed in upland hardwood systems. In areas where deer density may limit understory development, high-quality forage food plots may be used to buffer browsing while strategies to reduce deer density and stimulate the forest understory are implemented. © 2011 The Wildlife Society.     

Advertising individual identity by mother and adolescent contact calls in Siberian wapiti Cervus elaphus sibiricus

Individualistic contact calls facilitate mother‐offspring reunion after separation. However, in many mammals, both the acoustic structure and individuality of contact calls differ between mother and young. In contrast, in Siberian wapiti Cervus elaphus sibiricus, contact calls are similar in the acoustics between mother and young, whereas effects of this similarity on vocal individuality were not investigated. In this study, we analyzed acoustic differences between closed‐mouth (nasal) and open‐mouth (oral) contact calls and examined individuality of the most usual oral calls of 19 Siberian wapiti (9 hinds and 10 5–6‐month adolescents) emitted in response to mother‐offspring separation. In the oral calls, the values of frequency and power variables were higher than in the nasal calls. Calls of hinds and adolescents did not differ by the maximum fundamental frequency and duration, whereas the peak frequency was higher in the young. Discriminant function analysis (DFA) based on 11 acoustic variables of oral calls accurately classified to individual 92.5% of hind calls and 96.9% of adolescent calls (chi‐square test for differences between hinds and adolescents, p = 0.19). Variables mainly contributing to vocal identity (duration, start, and maximum fundamental frequency) were the same in calls of mothers and adolescents. We conclude that similarities in the acoustics calls of mothers and adolescents mean that they do not differ in their potential for encoding individual identity, suggesting a mutual process of mother‐offspring vocal recognition in Siberian wapiti.     

林麝源蜡样芽孢杆菌SCBCM001株的分离鉴定及全基因组序列分析

【背景】细菌性疾病是林麝规模化养殖的重要制约因素,蜡样芽孢杆菌曾在林麝化脓灶中检出,但是目前对林麝源蜡样芽孢杆菌的研究报道很少。【目的】对分离自病死林麝肝脏中的一株疑似蜡样芽孢杆菌进行分离鉴定和全基因组序列分析,为林麝相关疾病的防治奠定基础。【方法】将病原菌纯化培养后,对病原菌进行生化试验、药敏试验和小鼠致病性试验;并通过第3代单分子测序技术进行全基因组测序,根据测序结果进一步评估物种间的亲缘关系,并进行基因功能注释和遗传进化分析。【结果】该病原菌经平均核苷酸相似度分类和系统发育树分析属于蜡样芽孢杆菌群,生化结果符合蜡样芽孢杆菌的一般特征,将分离菌株命名为SCBCM001。该菌株对小鼠的半数致死量为8.3×107 CFU,对大多数β-内酰胺类、四环素和磺胺异噁唑耐药,对氨基糖苷类、头孢氨苄、头孢哌酮和亚胺培南等药物敏感;全基因组测序结果表明该菌株的染色体大小为5292570bp,GC含量为35.37%,多位点序列分型显示该菌株属于ST427序列类型。在菌株SCBCM001基因组内发现hblA、hblC、hblD、nheA、nheB、clo和cytK等多种毒力因子,同时菌株携带对β-内酰...     

The olfactory subgenome and specific odor recognition in forest musk deer

Olfactory receptors (ORs) are encoded by OR genes. The OR genes in forest musk deer (Moschus berezovskii), which rely on olfaction for reproductive and social communication, are poorly understood. In this study, we analyzed the genome sequence of the forest musk deer to obtain its olfactory subgenome and compared it to other species. A total of 1378 OR‐related sequences were detected in the forest musk deer genome including 864 functional genes, 366 pseudogenes and 148 partial genes. These OR genes were classified into Class I and Class II and were further classified into 18 families and 244 subfamilies through sequence identity. Comparative analyses of the OR genes’ protein sequences in species from different orders (forest musk deer, human, mouse and dog) showed that 12 clusters were specific to forest musk deer. However, when compared to other Artiodactyl species (i.e. cattle, yak and pig) only two clusters were specific to forest musk deer. The odor identification potential of the OR genes in the forest musk deer was focused mainly on floral, woody, lemon, sweet and fatty odors. We also found that OR genes specific to forest musk deer were involved in the identification of spearmint and caraway. Our work is the first genome‐wide analysis of OR genes in forest musk deer. These findings will assist with better understanding the relationship between behavior and olfaction in the forest musk deer and the characteristics of the olfactory subgenome in Artiodactyl mammals.     

Habitat manipulation preferred by Eld’s Deer in Hainan Island,China

In order to improve the conservation status of the Eld’s Deer (Cervus eldii), a critically endangered species in China, a population in a nature reserve on Hainan Island was studied. Abundances and behaviours in two different habitat types, natural and manipulated, were recorded. We found that different habitats were preferred according to season. Both sexes were more abundant in the manipulated habitat from January to May, with males being more abundant in the natural habitat from September to October. However, females, were significantly more abundant from April and May in the manipulated habitat. The deer preferred the more open manipulated habitat for feeding, consistent with greater food availability. This study provides useful evidence for managers to create seasonally suitable habitat for the conservation of this species on Hainan Island. Similar methods could also be applied to other deer species in China, most of which are facing critical survival challenges.     

Landscape genetics of California mule deer (Odocoileus hemionus): the roles of ecological and historical factors in generating differentiation

Landscape genetics is an emerging discipline that utilizes environmental and historical data to understand geographic patterns of genetic diversity. Niche modelling has added a new dimension to such efforts by allowing species–environmental associations to be projected into the past so that hypotheses about historical vicariance can be generated and tested independently with genetic data. However, previous approaches have primarily utilized DNA sequence data to test inferences about historical isolation and may have missed very recent episodes of environmentally mediated divergence. We type 15 microsatellite loci in California mule deer and identify five genetic groupings through a Structure analysis that are also well predicted by environmental data. We project the niches of these five deer ecotypes to the last glacial maximum (LGM) and show they overlap to a much greater extent than today, suggesting that vicariance associated with the LGM cannot explain the present-day genetic patterns. Further, we analyse mitochondrial DNA (mtDNA) sequence trees to search for evidence of historical vicariance and find only two well-supported clades. A coalescence-based analysis of mtDNA data shows that the genetic divergence of the mule deer genetic clusters in California is recent and appears to be mediated by ecological factors. The importance of environmental factors in explaining the genetic diversity of California mule deer is unexpected given that they are highly mobile species and have a broad habitat distribution. Geographic differences in the timing of reproduction and peak vegetation as well as habitat choice reflecting natal origin may explain the persistence of genetic subdivision.