Two new reversible naphthalimide‐based fluorescent chemosensors for Hg2+

Naphthalimide‐based fluorescent probes 1 and 2 were synthesized, and were designed to form probe–Hg complexes through Hg²⁺ ions coordinated to the amide group and imidazole group. They showed high sensitivity and were selective ‘naked‐eye’ chemosensors for Hg²⁺ in phosphate buffer. The fluorescence of compounds 1 and 2 could be quenched up to 90% by the addition of Hg²⁺. Reversible probes can detect Hg²⁺ ions over a wide pH range (7.0–10.0). Copyright © 2015 John Wiley & Sons, Ltd.     

RNA approaches the B‐form in stacked single strand dinucleotide contexts

Duplex RNA adopts an A‐form structure, while duplex DNA interconverts between the A‐ and B‐forms depending on the environment. The C2′‐endo sugar pucker seen in B‐form DNA can occur infrequently in ribose sugars as well, but RNA is not understood to assume B‐form conformations. Through analysis of over 45,000 stacked single strand dinucleotide (SSD) crystal structure conformations, this study demonstrates that RNA is capable of adopting a wide conformational range between the canonical A‐ and B‐forms at the localized SSD level, including many B‐form‐like conformations. It does so through C2′‐endo ribose conformations in one or both nucleotides, and B‐form‐like neighboring base stacking patterns. As chemical reactions on nucleic acids involve localized changes in chemical bonds, the understanding of how enzymes distinguish between DNA and RNA nucleotides is altered by the energetic accessibility of these rare B‐form‐like RNA SSD conformations. The existence of these conformations also has direct implications in parametrization of molecular mechanics energy functions used extensively to model nucleic acid behavior., 2016. © 2015 Wiley Periodicals, Inc. Biopolymers 105: 65–82, 2016     

Restriction endonuclease EcoO109 from Escherichia coli H709c with heptanucleotide recognition site 5'-PuG/GNCCPy

A new restriction endonuclease, EcoO109, has been isolated from Escherichia coli H709c by polyethyleneimine (PEI) precipitation, DEAE-cellulose chromatography and heparin agarose chromatography. The yield was high, more than 3000 units/g of wet cells. The EcoO109 endonuclease recognizes and cleaves a nucleotide sequence of (formula: see text), in the presence of 10 mM Mg2+. The enzyme will be useful for structural analysis and molecular cloning of DNA because of the stability, high yield and easy handling of the producer strain.     

Understanding the conformational flexibility and electrostatic properties of curcumin in the active site of rhAChE via molecular docking,molecular dynamics,and charge density analysis

Acetylcholinesterase (AChE) is an important enzyme responsible for Alzheimer’s disease, as per report, keto-enol form of curcumin inhibits this enzyme. The present study aims to understand the binding mechanism of keto-enol curcumin with the recombinant human Acetylcholinesterase (rhAChE) from its conformational flexibility, intermolecular interactions, charge density distribution, and the electrostatic properties at the active site of rhAChE. To accomplish this, a molecular docking analysis of curcumin with the rhAChE was performed, which gives the structure and conformation of curcumin in the active site of rhAChE. Further, the charge density distribution and the electrostatic properties of curcumin molecule (lifted from the active site of rhAChE) were determined from the high level density functional theory (DFT) calculations coupled with the charge density analysis. On the other hand, the curcumin molecule was optimized (gas phase) using DFT method and further, the structure and charge density analysis were also carried out. On comparing the conformation, charge density distribution and the electrostatic potential of the active site form of curcumin with the corresponding gas phase form reveals that the above said properties are significantly altered when curcumin is present in the active site of rhAChE. The conformational stability and the interaction of curcumin in the active site are also studied using molecular dynamics simulation, which shows a large variation in the conformational geometry of curcumin as well as the intermolecular interactions.     

县域城镇空间形态与居住建筑能耗关联性的连续尺度研究——以浙江长兴、福建连江为例

居住建筑能耗受建筑周边空间形态的直接影响,确定空间形态低碳效应及其最佳尺度将有助于实现县域城镇低碳转型。以浙江省长兴县、福建省连江县为例,共计选取49个具有代表性的居住建筑样本,采用GIS分析与数理统计相结合的方式,在居住建筑1800m半径范围内,以200m为间隔建立缓冲区,开展全年、最冷月份能耗期及最热月份能耗期建筑能耗与周边空间形态关联性的连续尺度研究。结果表明：(1)道路密度、开发密度、容积率均与建筑能耗呈正相关,但各指标对应的能耗时期、尺度范围有较大差异。(2)水面率、土地利用混合度是与建筑能耗相关的共性指标,但在不同地区的正负效应及尺度范围不同;(3)影响浙闽地区县域城镇最热月份能耗期能耗的关键形态因子为1000m-道路密度、800m-水面率、1600m-开放空间率;影响连江最冷月份能耗期能耗的关键形态因子为800m-水面率。(4)就控碳单元设置而言,长兴县可重点关注1000—1200m半径范围,连江县可重点关注800—1000m、1400m半径范围。(5)浙闽地区县域城镇特性指标为开放空间率,与最热月份能耗期建筑能呈负相关;长兴县特性指标为容积率、水岸密度,分别与全年、最冷...     

不同浓度和形态磷处理下内生真菌感染对高羊茅的影响

以感染内生真菌(endophyte-infected,EI)和不感染内生真菌(endophyte-free,EF)的高羊茅(Festuca arundinacea Schreb.)为材料,在温室沙培条件下研究内生真菌对高羊茅适应缺磷及利用不同形态磷肥的影响。结果表明,1)缺磷条件下,高羊茅EI和EF植株生长差异不显著;正常供磷条件下,高羊茅EI植株拥有更多分蘖数和绿叶数。说明正常供磷条件下内生真菌改善了宿主高羊茅的生长。2)与水溶性磷相比,高羊茅根有机酸和酸性磷酸酶(acid phosphatase,APase)活性在难溶性磷条件下显著增加,而根总酚含量无显著变化。在水溶性磷条件下,高羊茅EI植株根总酚含量显著高于EF植株,此时EI植株比EF植株拥有更多分蘖数和绿叶数,说明在水溶性磷条件下内生真菌对宿主地上部生长具有一定贡献。在难溶性磷条件下,虽然高羊茅EI植株根总酚含量仍然高于EF植株,但同时EI植株根有机酸含量显著低于EF植株,因此内生真菌感染只是增大了宿主植物的根冠比,而对分蘖数和绿叶数等无显著影响,说明内生真菌对宿主利用难溶性磷贡献不大。可见,内生真菌对宿主植物的生长在水溶性磷条件下更有利。     

不同类群酵母胞壁甘露聚糖核磁共振氢谱的比较研究

运用核磁共振氢谱(PMR谱)~(**)对各类酵母的细胞壁甘露聚糖进行比较研究,在我国尚无报道,其中某些酵母也尚无文献记载。本文结果表明:1.同菌株的胞壁甘露聚糖PMR谱型的重复性很好。2.同种不同株的酿酒酵母(Saccharomyces cerevisiae)的多糖谱型也相同。3.所测的二端芽殖酵母中完全型与不完全型菌株的谱型很相似,如柠檬形克勒克酵母(Kloeckera apiculata)与葡萄有孢汉逊酵母(Hanseniaspora uvarum。4.某些分类系统上来源较杂的子囊菌酵母如单宁管囊酵母(Packysolen tanophilus)、萤光威克酵母(Wickerhamiaflurescens)与高糖固囊酵母(Citeromyces matritensis)则体现了各不相同的谱型。5.二株分自西双版纳的极为相近的类酵母(Saccharomycodes sp.)其多糖的(PMR)谱型与多糖的组分都彼此相同,有助于对它们的适当归类。这一切证明酵母胞壁多糖PMR谱型相似程度的比较是分类上较有意义的性状,有助于探讨亲缘关系,核实完全型与不完全型,也有助于对疑难菌株的分析     

Thyroid-hormone effects on putative biochemical pathways involved in UCP3 activation in rat skeletal muscle mitochondria

In vitro, uncoupling protein 3 (UCP3)-mediated uncoupling requires cofactors [e.g., superoxides, coenzyme Q (CoQ) and fatty acids (FA)] or their derivatives, but it is not yet clear whether or how such activators interact with each other under given physiological or pathophysiological conditions. Since triiodothyronine (T3) stimulates lipid metabolism, UCP3 expression and mitochondrial uncoupling, we examined its effects on some biochemical pathways that may underlie UCP3-mediated uncoupling. T3-treated rats (Hyper) showed increased mitochondrial lipid-oxidation rates, increased expression and activity of enzymes involved in lipid handling and increased mitochondrial superoxide production and CoQ levels. Despite the higher mitochondrial superoxide production in Hyper, euthyroid and hyperthyroid mitochondria showed no differences in proton-conductance when FA were chelated by bovine serum albumin. However, mitochondria from Hyper showed a palmitoyl-carnitine-induced and GDP-inhibited increased proton-conductance in the presence of carboxyatractylate. We suggest that T3 stimulates the UCP3 activity in vivo by affecting the complex network of biochemical pathways underlying the UCP3 activation.     

玉米秸秆还田对石灰性土壤Zn形态及其有效性的影响

采用尼龙网袋田间填埋的方法,研究了玉米秸秆还田对石灰性土壤Zn形态及其生物有效性的影响.结果表明：与施用Zn肥相比,秸秆还田对提高土壤全Zn含量贡献较小;施Zn肥和添加秸秆处理均显著增加土壤有效Zn(DTPA-Zn)含量,且施Zn肥处理增加的幅度更大;高锌秸秆还田后释放的Zn更易转化为土壤DTPA-Zn,转化率达49.0%,秸秆还田后土壤DTPA-Zn转化率呈先减小后增大的趋势,而施Zn肥处理的变化不大.土壤交换态Zn(Ex-Zn)、碳酸盐结合态Zn(Carb-Zn)、氧化锰结合态Zn(OxMn-Zn)、紧结有机态Zn(Sbo-Zn)和残渣态Zn(Min-Zn)含量在各处理中差异不大,施Zn肥处理的土壤松结有机态Zn(Wbo-Zn)含量显著大于对照和只添加秸秆处理.尽管玉米秸秆的含Zn量较低,但秸秆Zn释放后更易转化为DTPA-Zn,秸秆还田同时施用Zn肥是提高石灰性土壤供Zn能力的有效方法.     

单抗药物专题报告——走过孕育期，收获正当时（Ⅰ）

单抗药物以靶向性强、特异性高、副反应小等优势在癌症、自身免疫性疾病等治疗领域取得了快速发展,成为医药行业增速最快的 细分领域。报告采用文献调研、数据库检索、数据统计与分析等定性定量研究方法,从竞争优势、应用领域、给药剂型、产业现状、成长 路径等角度对国内外单抗药物领域进行多角度、多层次的分析,旨在为相关医药企业明确发展方向、确定产品研发思路及制定市场策略提 供参考。