Platyamoeba nucleolilateralis n. sp. from the Chesapeake Bay Region

Members of the genus Platyamoeba are among the most common of the free-living brackish and marine amoebae; yet, to date only twelve species have been documented in the literature and only a limited number of habitats have been sampled globally. During the course of a systematic survey of salt-marsh amoebae along the east coast of the United States, a new species of Platyamoeba was discovered in sediment samples obtained from a salt marsh at Assateague Island, VA. The species can be distinguished from all other described species within the genus by the presence of a nucleus with a single parietal nucleolus and a floating form with long tapering pseudopods. Its shape varies from flabellate to spatulate as described for species of Platyamoeba and Vannella. The fine structure of the glycocalyx, however, is characteristic of Platyamoeba.     

Atypical behaviour and survival of Streptococcus pyogenes L forms during intraperitoneal infection in rats

Groups of rats were injected intraperitoneally with cell wall-deficient (L) forms of Streptococcus pyogenes, with their parental (S) forms, as well as with a combined inoculum of both forms (S+L). Peritoneal exudate samples were harvested on days 1, 3, 7, 15 and 30 after challenge and were investigated by microbiological, electron microscopic, cytometric and biochemical methods. Parental S forms were isolated from peritoneal exudate samples up to day 15 post infection, while L form cultures were isolated until the end of the examined interval. Electron microscopic examination revealed continuous adhesion of L forms on the macrophage surface as well as intracellular persistence inside them. It was demonstrated that the intraperitoneal inflammatory response to L form infection was higher than to the other infections and the monocyte-macrophage populations were predominant. The established atypical behaviour and long survival of S. pyogenes L forms in the rat's peritoneum could explain some of the mechanisms of the pathogens' persistence as well as the reasons for chronic streptococcal infections.     

Complete assignment of 1H, 13C and 15N chemical shifts for bovine β-lactoglobulin: Secondary structure and topology of the native state is retained in a partially unfolded form

Although -lactoglobulin (-LG) has been studied extensively for more than 50 years, its physical properties in solution are not yet understood fully in terms of its three-dimensional (3D) structure. For example, despite a recent high-resolution crystal structure, it is still not clear why the two common variants of bovine -LG which differ by just two residues have different aggregation properties during milk processing. We have conducted solution-state NMR studies on a recombinant form of the A variant of -LG at low pH conditions where the protein is partially unfolded and exists as a monomer rather than a dimer. Using a¹³ C,¹⁵N-labelled sample, expressed in Pichia pastoris, we have employed the standard combination of 3D heteronuclear NMR techniques to obtain near complete assignments of proton, carbon and nitrogen resonances. Using a novel pulse sequence we were able to obtain additional assignments, in particular those of methyl groups in residues preceding proline within the sequence. From chemical shifts and on the basis of inter-residue NOEs, we have inferred the secondary structure and topology of monomeric -LG A. It includes eight antiparallel -strands arranged in a barrel, flanked by an -helix, which is typical of a member of the lipocalin family. A detailed comparison with the crystal structure of the dimeric form (for a mixture of A and B variants) at pH 6.5 reveals a close resemblance in both secondary structure and overall topology. Both forms have a ninth -strand which, at the higher pH, forms part of the dimer interface. These studies represent the first full NMR assignment of -LG and will form the basis for a complete characterisation of the solution structure and dynamics of this protein and its variants.     

浮游细菌群落变化对锥状斯氏藻藻华的影响

目的:本实验以大亚湾原发性锥状斯氏藻为例,采集野外样品,分析藻华不同时期主要菌群的结构和环境样品的硫化物与赋存形态。方法:应用末端限制性片段长度多态性技术和主成分分析方法,分析藻华发生过程中浮游细菌群落相似程度的情况,得到差异显著的浮游细菌类群。选出代表类群的样品进行16S r DNA高变区测序,获取浮游细菌的分类结果及相对丰度。采用Pearson相关性分析浮游细菌、藻、硫化物两两间的相互关系。结果:早期藻华以Enterobacteriaceae为主导,各优势菌群(Enterobacteriaceae:Alteromonadaceae:Rhodobacteraceae)的比例约为8:1:21,硫元素主要以DMS形式存在;而后期Alteromonadaceae成为优势物种,各优势菌群的比例转变为3:5:25,硫的赋存形态由DMS转变为DMSO;Rhodobacteraceae在藻华的前期与后期均以优势种存在。本实验还发现藻华不同时期4种与藻呈正向相关的细菌,以及8种对藻起负向调节作用的细菌,它们在藻华生消的过程中扮演着不同的角色。结论:菌群的组成性改变与藻华生消具有一定的相关性,并对藻类的硫代谢产生影响。结果的获得有助于认识藻华微生物学过程中硫代谢的生态学功能,拓展锥状斯氏藻藻华的理论认识。     

A new rhodamine‐based fluorescent chemodosimeter for mercuric ions in water media

A new rhodamine–ethylenediamine–nitrothiourea conjugate (RT) was synthesized and its sensing property as a fluorescent chemodosimeter toward metal ions was explored in water media. Analytical results from absorption and fluorescence spectra revealed that the addition of Hg²⁺ ions to the aqueous solution of the chemodosimeter RT caused a distinct fluorescence OFF–ON response with a remarkable visual color change from colorless to pink; however, no clear spectral and color changes were observed from other metal ions including: Zn²⁺, Cu²⁺, Cd²⁺, Pb²⁺, Ag⁺, Fe²⁺, Cr³⁺, Co³⁺, Ni²⁺, Ca²⁺, Mg²⁺, K⁺ and Na⁺. The sensing results and the molecular structure suggested that a Hg²⁺‐induced a desulfurization reaction and cyclic guanylation of the thiourea moiety followed by ring‐opening of the rhodamine spirolactam in RT are responsible for a distinct fluorescence turn‐on signal, indicating that RT is a remarkably sensitive and selective chemodosimeter for Hg²⁺ ions in aqueous solution. Hg²⁺ within a concentration range from 0.1 to 25 μM can be determined using RT as a chemodosimeter and a detection limit of 0.04 μM is achieved. Copyright © 2014 John Wiley & Sons, Ltd.     

云居山栓皮栎群落特征及多样性研究

栓皮栎群落是我国暖温带和亚热带落叶阔叶林的重要森林群落类型之一,也是赣北珍稀森林群落之一,在森林演替和植物资源利用中占有重要的地位。通过对江西云居山栓皮栎(Quercus variabilis)群落进行实地调查,采用区系分析、生活型谱分析、物种多样性和双向聚类等方法对其群落特征进行了研究,发现云居山自然保护区栓皮栎群落结构简单,层次明显,多样性程度不高。物种调查及区系研究结果显示,云居山栓皮栎群落维管束植物共计43科56属70种,植物区系主要以泛热带、东亚及北美间断、北温带分布为主,表现出从温带区系向热带区系过渡的特征;生活型谱以高位芽植物为主(占70%),其他生活型相对较少,反映出中亚热带森林以高位芽植物为主的特点。群落物种丰富度、多样性指数均为乔木层小于灌木层和草本层,均匀度指数分析表明,乔木层为聚集分布、灌木层和草本层为均匀分布。双向聚类分析表明,调查的5个样地均为栓皮栎群落,以乔木层物种多度可将5个样地分为3类,组成群落的24个主要物种可分为10类。     

Receptor binding and pH stability — How influenza A virus hemagglutinin affects host-specific virus infection

Influenza A virus strains adopt different host specificities mainly depending on their hemagglutinin (HA) protein. Via HA, the virus binds sialic acid receptors of the host cell and, upon endocytic uptake, HA triggers fusion between the viral envelope bilayer and the endosomal membrane by a low pH-induced conformational change leading to the release of the viral genome into the host cell cytoplasm. Both functions are crucial for viral infection enabling the genesis of new progeny virus.     

Effects of protons on macroscopic and single-channel currents mediated by the human P2X7 receptor

Human P2X7 receptors (hP2X7Rs) belong to the P2X family, which opens an intrinsic cation channel when challenged by extracellular ATP. hP2X7Rs are expressed in cells of the inflammatory and immune system. During inflammation, ATP and protons are secreted into the interstitial fluid. Therefore, we investigated the effect of protons on the activation of hP2X7Rs. hP2X7Rs were expressed in Xenopus laevis oocytes and activated by the agonists ATP or benzoyl-benzoyl-ATP (BzATP) at different pH values. The protons reduced the hP2X7R-dependent cation current amplitude and slowed the current deactivation depending on the type and concentration of the agonist used. These effects can be explained by (i) the protonation of ATP, which reduces the effective concentration of the agonist ATP⁴⁻ at the high- and low-affinity ATP activation site of the hP2XR, and (ii) direct allosteric inhibition of the hP2X7R channel opening that follows ATP⁴⁻ binding to the low-affinity activation site. Due to the hampered activation via the low-affinity activation site, a low pH (as observed in inflamed tissues) leads to a relative increase in the contribution of the high-affinity activation site for hP2X7R channel opening.