Thyroxine as a Mediator of Metamorphosis of Atlantic Halibut, Hippoglossus Hippoglossus

The response of morphological, histological and endocrinological development to exogenous 1-thyroxine (T₄) and to water depth during metamorphosis in Atlantic halibut, Hippoglossus hippoglossus, was investigated. Exogenous T₄ was given in daily doses of 0.1, 0.05 ppm or a control treatment to halibut larvae at 550 daydegrees (posthatch, premetamorphic) for 14 days. Water depths of 40 cm, 10 cm or 1.5 cm were used to rear halibut larvae from 590 daydegrees for 21 days. Halibut larvae given exogenous T₄ at 0.1 ppm had accelerated eye migration relative to MH in fish given 0.05 ppm and in control fish. Pigmentation was correlated with dosage after 14 days. The volume of thyroid tissue was expressed in a dose-dependent manner and exhibited a size-dependency within each treatment. However, the follicles were atypical with reduced colloid, increased lumen and low epithelial cells even in the control group. The results indicate that T₄ is a mediator in halibut metamorphosis. In the water depth experiment, only cortisol levels of larvae reared in 1.5 cm water were significantly affected after 21 days, but this was not correlated with metamorphic rate. Hormone profiles, morphological changes and size suggest the existence of a window of opportunity for metamorphosis in halibut extending from about 16 mm and tapering off about 21 mm SL. The pooled hormone profiles indicate the commencement of a hormonal cascade similar to that of other flatfishes during metamorphosis. The results indicate that growth, neural and skeletal transformation, and pigmentation are biochemically separate processes in the metamorphosis of Atlantic halibut.     

多模式磁共振指导超时间窗急性缺血性卒中的静脉溶栓治疗研究

目的:评价多模式磁共振指导下超时间窗静脉应用重组组织型纤溶酶原激活剂rt PA治疗急性缺血性卒中的疗效及安全性。方法:将68例急性脑梗塞患者分为rt PA静脉溶栓组A组、强化抗栓治疗组B组,各组按药物干预时间再分为4.5小时亚组及4.5-6小时亚组。A组给予rt PA静脉溶栓治疗和常规治疗,B组给予首剂氯吡格雷300毫克+阿司匹林100毫克和常规治疗。治疗前行急诊头多模式磁共振检查,治疗24小时后复查头CT,分别于治疗前后不同时间点进行NIHSS评分和3个月MRS评分,记录不良事件的发生情况。结果:A组两个亚组治疗后各时间点NIHSS评分均明显低于B组,且A组4.5小时亚组治疗后NIHSS评分低于其4.5-6小时亚组,A组3个月预后良好患者比例显著高于B组,差异均有统计学意义(P0.05)。A组症状性颅内出血的发生率高于B组。结论:多模式头磁共振指导下超时间窗rt PA静脉溶栓治疗安全有效,远期疗效优于强化抗栓治疗,但颅内症状性出血风险略高于强化抗栓治疗。     

KaKs_Calculator 2.0： A Toolkit Incorporating Gamma-Series Methods and Sliding Window Strategies

We present an integrated stand-alone software package named KaKs_Calculator 2.0 as an updated version.It incorporates 17 methods for the calculation of nonsynonymous and synonymous substitution rates;among them,we added our modified versions of several widely used methods as the gamma series including γ-NG,γ-LWL,γ-MLWL,γ-LPB,γ-MLPB,γ-YN and γ-MYN,which have been demonstrated to perform better under certain conditions than their original forms and are not implemented in the previous version.The package is readily used for the identification of positively selected sites based on a sliding window across the sequences of interests in 5' to 3' direction of protein-coding sequences,and have improved the overall performance on sequence analysis for evolution studies.A toolbox,including C++ and Java source code and executable files on both Windows and Linux platforms together with a user instruction,is downloadable from the website for academic purpose at https://sourceforge.net/projects/kakscalculator2/.     

FIND:从下一代单端测序数据中快速查找Indel的方法

目的:针对下一代测序数据,尤其是单端测序数据,研究快速、准确查找Indel的方法。方法:先与全基因组参考序列进行快速比对,筛选出包含Indel的序列;再对这些序列进行双向的二次比对,确定Indel长度;最后借助长度信息在锁定范围内查找Indel的确切位置和相关信息。结果:本文成功构建FIND(Fast INDel detection system)系统,用于从单端测序数据中查找Indel信息。以模拟测序数据作为测试数据,在12X测试数据情况下,FIND的灵敏度和特异性分别为87.71%和99.66%,而且该性能还随着测序倍数的增加而提升。结论:充分利用比对过程获取的信息,在确定Indle长度的同时也确定出其大致位置,最终在局部范围内实现对单端测序数据中Indle的快速而准确的查找。     

基于多尺度遥感影像分割方法的湿地生态廊道设计

从生物多样性保护的角度,采用多尺度遥感影像分割方法中的人为干扰度模型,计算分割阈值确定湿地生态廊道的宽度,并结合聚类分析法分类的8种人为干扰类型,对建三江地区廊道结构设计进行了研究。结果表明,廊道分割阈值设为20%,非湿地背景噪声为9.43%,湿地生态廊道最佳宽度为1298m。8种人为干扰度中聚类c1、c2、c3和c4类型是受人为干扰较弱的区域,主要分布在浓江、乌苏里江、三江和洪河保护区原始生态环境区域,将其分别设定为核心区、实验区、边缘区、缓冲区4种类型。廊道核心区中的沼泽类型占75%,总体精度高达93.7%,实验区沼泽占72.2%,精度达到75.8%,边缘与缓冲区起到边缘护栏的作用,缓冲区宽度为945m,本研究为湿地生态廊道的建设与修复提供了可靠、科学的参考依据。     

Temperature seasonality during fry out‐migration influences the survival of hatchery‐reared chum salmon Oncorhynchus keta

Among years, fry‐to‐adult survival of hatchery‐reared chum salmon Oncorhynchus keta was positively correlated with the length (in days) of the fry out‐migration period with temperatures suitable for migration. Furthermore, survival decreased with increasing difference in mean temperature between May and June. Thus, prolonged out‐migration periods increased the probability of survival from fry to adult, lending support to the hypothesis that long migration periods decrease the risk of mortality (bet‐hedging), and increase the probability of migration when environmental conditions in fresh water and the ocean are suitable (match–mismatch).     

Gastric evacuation of mixed stomach contents in predatory gadoids: an expanded application of the square root model to estimate food rations

A mechanistic gastric evacuation model of mixed stomach contents was established. Its simple generic nature should prove useful for studying predator‐prey interactions in fish communities. Only prey lengths were required as additional input. Surface dependent digestive processes were considered to act on equal fractions of individual prey‐cylinder surfaces. Primary and interactive effects of size, energy density and resistance to digestion of individual prey in a stomach were described by the model. Model predictions of results from experiments on gastric evacuation of meals composed of different prey types demonstrated the capability of this model, as opposed to previously applied model principles, to predict evacuation of mixed stomach contents involving the three above‐mentioned prey characteristics. The study furthermore illustrated that estimates of food ration might be severely biased by using improperly formulated effects of prey characters on gastric evacuation, and demonstrated that the new model holds the potential to predict food ration and diet composition for wild populations of predatory fishes.