Quantitative assessment of coral diseases in the Florida Keys: strategy and methodology

Natural incidences of disease among scleractinian corals are unknown, since most studies have been initiated in response to specific disease outbreaks. Our ability to distinguish elevated disease incidences influenced by anthropogenic and climatic factors is limited since current estimates are probably inflated for extrapolation to larger areas. In our study, we used quantitative assessment methods to characterize the distribution and frequency of scleractinian and gorgonian coral diseases in the south Florida region. This paper is the first in a series that will detail different aspects of our studies. In this paper, we examined the strategy and methodology developed over 2 years to optimize the experimental design of our study. Pilot surveys were conducted in 1997 to develop and test methods, select and determine suitability of sites, and obtain preliminary data to assess the variance and efficiency of the sampling design. Survey periods targeted late spring, the time when coral diseases are believed to emerge, and late summer, the time when coral diseases are believed to be most prevalent. Two strata were chosen to evaluate patterns of coral disease: the first, geographic area, consisted of reefs in the vicinity of Key West, New Grounds and the Dry Tortugas; and the second, reef type, consisted of back, fore and transitional reefs. Random radial arc transects (10 m diameter) were used to quantify 10 diseases affecting 18 species of stony corals and gorgonian sea fans over a large geographical region. During the pilot survey, we demonstrated that the outer 8–10 m segment (113 m²) was an adequate sampling area. The survey implemented important quality assurance measures for data quality control. Power analysis determined that future studies should adopt =0.10, =0.0383, and 1-=0.9617 in our experimental design. The highest prevalence of disease in our study was during the 1997 summer survey, with a mean percent coral disease (MPCD) of 28% occurring at Key West area reefs, or 55% of all back reef stations. Our results do not show a clear pattern of seasonality in coral diseases within either stratum, although differences in disease distribution between reef types and geographic areas were apparent in some of the spring and summer surveys.     

Environmental limits to growth: physiological niche boundaries of corals along turbidity–light gradients

The physiological responses of organisms to resources and environmental conditions are important determinants of niche boundaries. In previous work, functional relationships between organism energetics and environment have been limited to energy intakes. However, energetic costs of maintenance may also depend on the supply of resources. In many mixotrophic organisms, two such resource types are light and particle concentration (turbidity). Using two coral species with contrasting abundances along light and turbidity gradients (Acropora valida and Turbinaria mesenterina), we incorporate the dual resource-stressor roles of these variables by calibrating functional responses of energy costs (respiration and loss of organic carbon) as well as energy intake (photosynthesis and particle feeding). This allows us to characterize physiological niche boundaries along light and turbidity gradients, identify species-specific differences in these boundaries, and assess the sensitivity of these differences to interspecific differences in particular functional response parameters. The turbidity-light niche of T. mesenterina was substantially larger than that of A. valida, consistent with its broader ecological distribution. As expected, the responses of photosynthesis, heterotrophic capacity, respiration, and organic carbon loss to light and turbidity varied between species. Niche boundaries were highly sensitive to the functional responses of energy costs to light and turbidity. Moreover, the study species niche differences were almost entirely attributable to species-specific differences in one functional response: that of respiration to turbidity. These results demonstrate that functional responses of energy-loss processes are important determinants of species-specific physiological limits to growth, and thereby of niche differences in reef corals. Given that many resources can stress organisms when supply rates are high, we propose that the functional responses of energy losses will prove to be important determinants of niche differences in other systems as well.     

GFP-like proteins as ubiquitous metazoan superfamily: evolution of functional features and structural complexity

Homologs of the green fluorescent protein (GFP), including the recently described GFP-like domains of certain extracellular matrix proteins in Bilaterian organisms, are remarkably similar at the protein structure level, yet they often perform totally unrelated functions, thereby warranting recognition as a superfamily. Here we describe diverse GFP-like proteins from previously undersampled and completely new sources, including hydromedusae and planktonic Copepoda. In hydromedusae, yellow and nonfluorescent purple proteins were found in addition to greens. Notably, the new yellow protein seems to follow exactly the same structural solution to achieving the yellow color of fluorescence as YFP, an engineered yellow-emitting mutant variant of GFP. The addition of these new sequences made it possible to resolve deep-level phylogenetic relationships within the superfamily. Fluorescence (most likely green) must have already existed in the common ancestor of Cnidaria and Bilateria, and therefore GFP-like proteins may be responsible for fluorescence and/or coloration in virtually any animal. At least 15 color diversification events can be inferred following the maximum parsimony principle in Cnidaria. Origination of red fluorescence and nonfluorescent purple-blue colors on several independent occasions provides a remarkable example of convergent evolution of complex features at the molecular level.     

Genetic structure of the deep-sea coral Lophelia pertusa in the northeast Atlantic revealed by microsatellites and internal transcribed spacer sequences

The azooxanthellate scleractinian coral Lophelia pertusa has a near-cosmopolitan distribution, with a main depth distribution between 200 and 1000 m. In the northeast Atlantic it is the main framework-building species, forming deep-sea reefs in the bathyal zone on the continental margin, offshore banks and in Scandinavian fjords. Recent studies have shown that deep-sea reefs are associated with a highly diverse fauna. Such deep-sea communities are subject to increasing impact from deep-water fisheries, against a background of poor knowledge concerning these ecosystems, including the biology and population structure of L. pertusa. To resolve the population structure and to assess the dispersal potential of this deep-sea coral, specific microsatellites markers and ribosomal internal transcribed spacer (ITS) sequences ITS1 and ITS2 were used to investigate 10 different sampling sites, distributed along the European margin and in Scandinavian fjords. Both microsatellite and gene sequence data showed that L. pertusa should not be considered as one panmictic population in the northeast Atlantic but instead forms distinct, offshore and fjord populations. Results also suggest that, if some gene flow is occurring along the continental slope, the recruitment of sexually produced larvae is likely to be strongly local. The microsatellites showed significant levels of inbreeding and revealed that the level of genetic diversity and the contribution of asexual reproduction to the maintenance of the subpopulations were highly variable from site to site. These results are of major importance in the generation of a sustainable management strategy for these diversity-rich deep-sea ecosystems.     

Polychaetes associated with the sciaphilic alga community in the northern Aegean Sea: spatial and temporal variability

Polychaete biodiversity has received little attention despite its importance in biomonitoring. This study describes polychaete diversity, and its spatial and temporal variability in infralittoral, hard substrate assemblages. Seven stations were chosen in the central area of the northern Aegean Sea. At each station, one to three depth levels were set (15, 30 and 40 m). Five replicates were collected by scuba diving with a quadrat sampler (400 cm²) from each station and depth level during summer for the spatial analysis, and seasonally for the study of temporal changes. Common biocoenotic methods were employed (estimation of numerical abundance, mean dominance, frequency, Margalefs richness, Shannon-Weaver index and Pielous evenness). A total of 5,494 individuals, belonging to 79 species, were counted and classified. Diversity indices were always high. Clustering and multidimensional scaling techniques indicated a high heterogeneity of the stations, although these were all characterized by the sciaphilic alga community. A clear seasonal pattern was not detectable. Summer and autumn samples discriminate, while winter and spring form an even group. The abundance/biomass comparison indicated a dominance of k-strategy patterns, characteristic of stable communities.Communicated by H.-D. Franke     

Effects of Habitat Connectivity on the Abundance and Species Richness of Coral Reef Fishes: Comparison of an Experimental Habitat Established at a Rocky Reef Flat and at a Sandy Sea Bottom

Coral reef fish assemblages are widely recognized for the coexistence of numerous species, which are likely governed by both coral diversity and substratum complexity. However, since coral reefs provide diverse habitats due to their physical structure and different spatial arrangements of coral, findings obtained from an isolated habitat cannot necessarily be applied to fish assemblages in other habitats (e.g. continuous habitats). The aim of this study, therefore, was to determine by a field experiment whether habitat connectivity (spatial arrangement of coral colonies) affects abundance and species richness of fishes in an Okinawan coral reef. The experiment consisted of transplanted branching coral colonies at a 4m×8m quadrat at both a rocky reef flat and sandy sea bottom. Generally, the abundance of fishes was greater at the sandy sea bottom, especially for three species of pomacentrids, one species of labrids, one species of chaetodontids and two species of apogonids. Species–area curves showed that the species richness of fishes was significantly greater in the quadrat at the sandy sea bottom at 3, 6 and 9 months after the start of the experiment. The rate of increase in abundance of fishes per area was significantly greater in the quadrat at the sandy sea bottom over the study period. The results of rarefaction analyses showed that the rate of increase in species richness per abundance was significantly higher in the quadrat at the sandy sea bottom in the juvenile settlement period, indicating that the magnitude of dominance by particular species was greater at the sandy sea bottom habitat. Our findings suggest that habitat connectivity affects the abundance and species richness of coral reef fishes, i.e. the isolated habitat was significantly more attractive for fishes than was the continuous habitat. Our findings also suggest that the main ecological factors responsible for organization of fish assemblage at a continuous habitat and at an isolated habitat are different.     

Molecular Phylogenetic Relationships Between Prostanoid-Containing Okinawan Soft Coral (<Emphasis Type="Italic">Clavularia viridis</Emphasis>) and Nonprostanoid-Containing <Emphasis Type="Italic">Clavularia</Emphasis> Species Based on Ribosomal ITS Sequence

To study phylogenetic relationships among Okinawan soft corals of the genus Clavularia, the ribosomal internal transcribed spacer sequences of host corals and the 18S rDNA sequences of symbiotic algae were analyzed. The molecular phylogenetic trees of hosts showed that a prostanoid-containing species, Clavularia viridis, is deeply diverged from other species of Clavularia which do not biosynthesize the prostanoids as the main secondary metabolites. Comparison of their trees suggested poor phylogenetic concordance between hosts and symbionts.     

Patterns of genetic variation do not correlate with geographical distance in the reef-building coral Pocillopora meandrina in the South Pacific

Dispersal may be a critical factor in the ability of reef-building corals to recover after major disturbances. We studied patterns of geographical structure using four microsatellite markers in seven South Pacific populations of Pocillopora meandrina, a major coral species from Polynesia. Variation within populations showed evidence of heterozygote deficiency. Genetic differentiation between populations was detected at a large scale (2000 km) between the Tonga and the Society Islands. Within the Society Islands, four of the five studied populations from Bora Bora, Moorea and Tahiti were not significantly different from each other. Unexpectedly, one of the three populations surveyed in Moorea was genetically different from the other two populations of this island (that were 5 and 10 km apart), and from the populations of the other two surveyed islands in this archipelago. We cannot rule out the possibility that this pattern is an equilibrium state, whereby short-range dispersal is locally more differentiating than long-range dispersal, as has been suggested by similar patterns reported in other studies. An alternative explanation that is globally consistent with all observations is that this is the signature of a large-scale destruction event, as for instance a bleaching event, followed by the recent restoration of populations by new colonists.     

Abundance and Spread of the Invasive Red Algae, <Emphasis Type="Italic">Kappaphycus</Emphasis> spp., in Kane’ohe Bay,Hawai’i and an Experimental Assessment of Management Options

Several species of Kappaphycus were intentionally introduced into Kane’ohe Bay, Hawai’i in the 1970s. Subsequent research has demonstrated that these algae have spread rapidly throughout the bay and can be found in a variety of reef habitats overgrowing and killing corals. This study was conducted to (a) quantify Kappaphycus spp. abundance both spatially and temporally, and (b) investigate control options including manual removal and the use of biocontrol agents. Kappaphycus spp. distribution has increased in the bay over the period between surveys conducted in 1999 and 2002, with variation among reefs. The biomass of Kappaphycus spp. removed, and the amount of time required to manually remove them from the reef varied with habitat type, but in all cases amounted to at least 10 kg/m² requiring almost 2 person-hours to clear 1 m². Re-growth of the algae following their removal was rapid at most sites, likely due to the experimentally demonstrated ability of the algae to re-grow from minute attachment points and the low palatability of the algae to native herbivorous fishes. The native sea urchin, Tripneustes gratilla, reduced the biomass of Kappaphycus spp. in small experimental enclosures and may be a useful biocontrol agent. Because Kappaphycus spp. are still spreading in Kane’ohe Bay and can overgrow over 50% cover on some reefs, we recommend that rapid management action be taken to prevent further damage and spread to other Hawaiian coral reefs.     

Aggregations of <Emphasis Type="Italic">Plectropomus areolatus</Emphasis> and <Emphasis Type="Italic">Epinephelus fuscoguttatus</Emphasis> (groupers,Serranidae) in the Komodo National Park,Indonesia: Monitoring and Implications for Management

Synopsis We identify fishery management implications from a long-term monitoring program focusing on spawning aggregations of high valued reef fish in Komodo National Park (KNP), Eastern Indonesia. Management objectives of KNP are not only to protect biodiversity, but also to conserve spawning stocks of high-valued commercial species for the replenishment of surrounding fishing grounds. We monitored two sites twice monthly over five years for two species of grouper, Epinephelus fuscoguttatus and Plectropomus areolatus. One site had an aggregation of both E. fuscoguttatus and P. areolatus, whereas the other site contained an aggregation of P. areolatus only. Over the five years monitoring period, aggregations typically formed during each full moon between September and February. Additionally, P. areolatus occasionally aggregated during new moons between April and July. We observed spawning only once, but because formation of aggregations were correlated to a higher incidence of behavior and signs indicative of reproduction and because most fish present were adults, it is likely that the formation of aggregations was associated with spawning. Over the five years monitoring period there was a reduction in mean fish size of up to 8 cm for P. areolatus, and a reduction in numbers of aggregating E. fuscoguttatus. Despite limited protection initiated in 2001, both sites are still heavily fished by local artisanal fishers. Because the observed reductions in size and in numbers could be caused by fishing pressure, managers should follow the precautionary principle by putting additional protective management in place. Since both species are relatively long-lived, at least five years of continued monitoring may be necessary to determine the outcome of management intervention. The variability in timing of aggregation in respect to season and moon phase in P. areolatus indicates that long-term monitoring must cover the entire year and both moon phases.