Genetic and Epigenetic Variation across Genes Involved in Energy Metabolism and Mitochondria of Chinese Hamster Ovary Cell Lines

The increasingdemandfor biopharmaceutical products drives the search for efficient cell factories that are able to sustainably support rapid growth, high productivity, and product quality. As these depend on energy generation, here the genomic variation in nuclear genes associated with mitochondria and energy metabolism and the mitochondrial genome of 14 cell lines is investigated. The variants called enable reliable tracing of lineages. Unique sequence variations are observed in cell lines adapted to grow in protein‐free media, enriched in signaling pathways or mitogen‐activated protein kinase 3. High‐producing cell lines bear unique mutations in nicotinamide adenine dinucleotide (NADH) dehydrogenase (ND2 and ND4) and in peroxisomal acyl‐CoA synthetase (ACSL4), involved in lipid metabolism. As phenotypes are determined not only by functional mutations, but also by the exquisite regulation of expression patterns, it is not surprising that ≈50% of the genes investigated here are found to be differentially methylated and thus epigenetically controlled, enabling a clear distinction of high producers, and cells adapted to a minimal, glutamine (Gln)‐free medium. Similar pathways are enriched as those identified by genome variation. This strengthens the hypothesis that these phenomena act together to define cell behavior.     

Influence of the physical environment and conspecific aggression on the spatial arrangement of breeding grey seals

Understanding the habitat requirements of a species for breeding is essential for its conservation, particularly if the availability of suitable habitat is a limiting factor for population growth. This is postulated to be the case for grey seals, one of the more abundant marine apex predators in northern European waters. In common with similar studies that have investigated the habitat preferences of breeding grey seals, we use abiotic (topographical, climatological) attributes but, unlike previous work, we also incorporate behavioural variables, particularly the occurrence of aggressive interactions between females and the presence of neighbouring seals. We used two Generalized Additive Models (GAM) in a sequential and iterative fashion. The first model links the occurrence of aggression at particular points in the colony to local topography derived from a Geographical Information System (GIS), presence of neighbouring seal pups and the day of the breeding season. The output of this GAM is used as one of the explanatory variables in a GAM of daily variation in the spatial distribution of births. Although proximity of a birth site to a water source and the presence of neighbouring seal pups both had significant influences on the distribution of newborn pups over time and space, at the scale of the study site it was found that simple rules could predict pup distribution more efficiently than a complex individual-based simulation model.     

Broad-scale habitat use by red-legged partridge <Emphasis Type="Italic">(Alectoris rufa</Emphasis>) in a low-density area in northwestern Spain

We developed broad-scale habitat selection models for the distribution of red-legged partridge Alectoris rufa in a low-density area in northwestern Spain, the Baixa-Limia site of community importance (SCI). The fieldwork consisted of ground surveys in 1 × 1 km squares. For habitat selection analysis, we used a 2 × 2 km grid integrating the information obtained in the 1 × 1 km squares. As predictors we used environmental variables measured on digital 1:50,000 scale cartography using a geographical information system (GIS). The red-legged partridge was scarce in the study area. The logistic regression analysis carried out on data from the squares with probable and confirmed breeding included the area of scrubland and pastureland with a positive sign. Using the breeding index category (BIC) three variables produced a slightly positive response: area of scrubland and pastureland, length of border between scrublands and forests, and length of border between forests and dams. The difficulty for modelling the habitat selection of this species could be due to human activities (hunting, habitat loss, restocking of hunt species), and may have modified their habitat preferences. Furthermore, the occupation of suboptimal habitats would distort the real habitat preferences.     

Impact of urban fragmentation on the genetic structure of the eastern red-backed salamander

Urban development is a major cause of habitat loss and fragmentation. Few studies, however, have dealt with fragmentation in an urban landscape. In this paper, we examine the genetic structure of isolated populations of the eastern red-backed salamander (Plethodon cinereus) in a metropolitan area. We sampled four populations located on a mountain in the heart of Montréal (Québec, Canada), which presents a mosaic of forested patches isolated by roads, graveyards and buildings. We assessed the genetic structure of these populations using microsatellite loci and compared it to the genetic structure of four populations located in a continuous habitat in southern Québec. Our results indicate that allelic richness and heterozygosity are lower in the urban populations. Exact differentiation tests and pairwise F _ST also show that the populations found in the fragmented habitat are genetically differentiated, whereas populations located in the continuous habitat are genetically homogeneous. These results raise conservation concerns for these populations as well as for rare or threatened species inhabiting urban landscapes.     

MtDNA reveals strong genetic differentiation among geographically isolated populations of the golden brown mouse lemur, <Emphasis Type="Italic">Microcebus ravelobensis</Emphasis>

Microcebus ravelobensis is an endangered nocturnal primate endemic to northwestern Madagascar. This part of the island is subject to extensive human intervention leading to massive habitat destruction and fragmentation. We investigated the degree of genetic differentiation among remaining populations using mitochondrial control region sequences (479–482 bases). Nine populations were sampled from the hypothesized geographic range. The region is composed of three inter-river systems (IRSs). Samples were collected in three areas of continuous forests (CFs) and six isolated forest fragments (IFFs) of different sizes. We identified 27 haplotypes in 114 animals, with CFs and IFFs harbouring 5–6 and 1–3 haplotypes, respectively. All IFFs were significantly differentiated from each other with high Φ_ST values and sets of unique haplotypes. The rivers constitute significant dispersal barriers with over 82% of the molecular variation being attributed to the divergence among the IRSs. The data suggest a deep and so far unknown split within the rufous mouse lemurs of northwestern Madagascar. The limited data base and the lack of ecological and morphological data do not allow definite taxonomic classification at this stage. However, the results clearly indicate that M. ravelobensis consists of three evolutionary significant units, possibly cryptic species, which warrant urgent and separate conservation efforts.     

Le site Paléolithique supérieur de Yudinovo : résultats des recherches archéologiques des années 2004–2016

The Upper Palaeolithic site of Yudinovo is one of the reference sites, located in the Desna River Basin. Multidisciplinary field studies, organized by the Desna mission (MAE RAS) and conducted between 2004 and 2016, have changed the vision existed so far on the structure and character of the Yudinovo site as well as on the duration of its occupations. The researchers found an ancient ford used by mammoths and other big mammals to cross the river, and a water source was one of the main factors in explaining the location of the Yudinovo site. The site has been occupied in a cyclical way for stays of varied duration. It was frequented by Prehistoric Men during the different seasons, and periods of occupation were apparently of different duration. The stratigraphy of the Yudinovo site reveals two major episodes in the evolution of the site. The dating of the lower archaeological layer dates back to 15,000–13,500 BC. J.C., while the upper layer is attributed to the period of 12,500–12,000 BC. The lower layer, which was formed during the major episode of occupation of the site, is rather thin and shows the complex stratigraphic structure. Various areas of activities, evacuation structures, storage areas with mammoth bones are discovered. Some elements of the lower archaeological layer are perfectly correlated with different episodes of sporadic occupation.     

New insights on ChlD1 function in Photosystem II from site-directed mutants of D1/T179 in Thermosynechococcus elongatus

The monomeric chlorophyll, Chl_D1, which is located between the P_D1P_D2 chlorophyll pair and the pheophytin, Pheo_D1, is the longest wavelength chlorophyll in the heart of Photosystem II and is thought to be the primary electron donor. Its central Mg²⁺ is liganded to a water molecule that is H-bonded to D1/T179. Here, two site-directed mutants, D1/T179H and D1/T179V, were made in the thermophilic cyanobacterium, Thermosynechococcus elongatus, and characterized by a range of biophysical techniques. The Mn₄CaO₅ cluster in the water-splitting site is fully active in both mutants. Changes in thermoluminescence indicate that i) radiative recombination occurs via the repopulation of *Chl_D1 itself; ii) non-radiative charge recombination reactions appeared to be faster in the T179H-PSII; and iii) the properties of P_D1P_D2 were unaffected by this mutation, and consequently iv) the immediate precursor state of the radiative excited state is the Chl_D1⁺Pheo_D1^? radical pair. Chlorophyll bleaching due to high intensity illumination correlated with the amount of ¹O₂ generated. Comparison of the bleaching spectra with the electrochromic shifts attributed to Chl_D1 upon Q_A^? formation, indicates that in the T179H-PSII and in the WT*3-PSII, the Chl_D1 itself is the chlorophyll that is first damaged by ¹O₂, whereas in the T179V-PSII a more red chlorophyll is damaged, the identity of which is discussed. Thus, Chl_D1 appears to be one of the primary damage site in recombination-mediated photoinhibition. Finally, changes in the absorption of Chl_D1 very likely contribute to the well-known electrochromic shifts observed at ~430?nm during the S-state cycle.     

大兴安岭原麝冬季的生境选择

2005年3～4月和2006年3月,在黑龙江省大兴安岭呼中自然保护区,采用机械布点法随机设置样线,对原麝(Moschus moschiferus)冬季生境选择进行了研究。对海拔、乔木密度、雪深、隐蔽度、食物丰富度、坡度和倒木数量进行2个独立样本的Mann-Whitey U检验,找出生境利用样方与任意样方的生态因子的差异。U检验的结果表明,原麝冬季喜欢活动在相对海拔高、乔木密度小、雪层浅、隐蔽度高、坡度陡且喜食食物丰富的区域;对植被类型、坡位、坡向、距水源距离、距人为干扰距离、动物干扰和碎石坡7个名词性变量采用卡方(Chi-square)统计进行显著性检验,卡方检验的结果表明:原麝冬季偏好远离人为干扰、接近碎石坡、阳坡和其他动物干扰较少的针阔混交林中;对以上14个生态因子进行主成分分析,结果表明,前6个特征值的累计贡献率达到72·318%,可以较好地反映原麝生境特征,根据主成分分析结果,将原麝冬季生境选择影响因子分别命名为空间因子(海拔、坡度、距碎石坡距离)、干扰因子(距人为干扰距离、距水源距离)、坡向因子(坡向、乔木密度)、坡位因子(坡位、动物干扰)、食物因子(食物丰富度、隐蔽度)和倒木因子(倒木数量)。     

同域分布的黑麂和小麂的时空生态位分化

生态位分化是解释物种共存的重要理论。Schonenr认为空间维度对生态位差异形成的影响程度最高,营养维度次之,时间维度则最后被启动。为验证这一假说,我们于2018年12月至2019年11月,在浙江清凉峰国家级自然保护区龙塘山区域采用公里网格法布设52台红外相机,对同域分布且食性相似的黑麂和小麂种群进行监测,计算平均拍摄率,分析不同季节黑麂和小麂对不同植被类型、海拔、坡位、水源距离的选择差异,并运用核密度估计法分析二者日活动节律及重叠程度。结果显示,(1)黑麂和小麂对空间生态位的选择出现分化：黑麂偏好针阔混交林,主要栖息于1 301～1 500 m的高海拔地区,回避下坡位和谷地,在距离水源较近的区域内活动频繁;小麂则偏好落叶阔叶林,主要栖息于901～1 100 m的中海拔地区,偏好中坡位,回避谷地,对水源距离没有明显的选择倾向。(2)黑麂和小麂均为晨昏性活动的昼行性动物,二者全年日活动节律重叠程度较高(Δ4=0.86),仅冬季较低(Δ1=0.65)。上述结果支持Schonenr的假说：首先,空间维度对物种生态位分化的影响大于时间维度,龙塘山区域黑麂和小麂主要通过选择不同的栖息地来增加空间...