Structure of a mosaic hybrid zone between the field crickets Gryllus firmus and G. pennsylvanicus

Hybrid zones provide insight into the nature of species boundaries and the evolution of barriers to gene exchange. Characterizing multiple regions within hybrid zones is essential for understanding both their history and current dynamics. Here, we describe a previously uncharacterized region of a well‐studied hybrid zone between two species of field crickets, Gryllus pennsylvanicus and G. firmus. We use a combination of mitochondrial DNA sequencing, morphological data, and modeling of environmental variables to identify the ecological factors structuring the hybrid zone and define patterns of hybridization and introgression. We find an association between species distribution and natural habitat; Gryllus pennsylvanicus occupies natural habitat along forest edges and natural clearings, whereas G. firmus occupies more disturbed areas in agricultural and suburban environments. Hybridization and introgression occur across patch boundaries; there is evidence of substantial admixture both in morphological characters and mtDNA, over a broad geographic area. Nonetheless, the distribution of morphological types is bimodal. Given that F₁ hybrids are viable and fertile in the lab, this suggests that strong pre‐zygotic barriers are operating in this portion of the hybrid zone.     

Gap analysis revealed a low efficiency of Natura 2000 network for the conservation of endemic species in Mediterranean temporary freshwater habitats

Listed and rare species are abundant in temporary freshwater habitats. Among them, the endemic contingent represents a crucial conservation target particularly in the areas characterized by abundant endemic flora for which the local administrations have a high level of responsibility. The aim of this research was to test how the endemic plants found in Mediterranean temporary ponds were represented in Natura 2000 network in a biodiversity hotspot of the Mediterranean region. The results of our research at regional scale pointed out that the existing Nature 2000 sites provide a limited degree of protection and that the gap analysis should be taken into account when conservation priorities are set.     

Conservation status of the two cryptic species of Hamatocaulis vernicosus (Bryophyta) in Sweden

Cryptic species are rarer than their combined, morphologically recognisable species. Each cryptic species may have its own habitat requirements and distribution, and each should be considered separately in biodiversity conservation. This investigation explores how well the two cryptic species of the wetland moss Hamatocaulis vernicosus (Mitt.) Hedenäs s.l., included in Annex II of the EU Habitat Directive, are safeguarded in existing protected sites in Sweden. Further, the northern distribution limit of the southern of the two cryptic species is explored. The distributions of the two cryptic species and their intraspecific variation are judged by the nuclear ITS1?+?2 and the two chloroplast markers rpl16 and trnL-trnF for a set of 89 specimens. The genetic differences between the two cryptic species are significant, but there are no differences between the protected and non-protected subsets within the respective species. The protected areas therefore represent these two species’ genetic variation well. The populations of both cryptic species appear stable, according to their genetic signals. One of the two cryptic species occurs almost throughout Sweden, whereas the other occurs only to the south of the southern limit of the southern boreal zone, except for two finds slightly further north in climatically mild areas.     

Semiparametric estimation of the transformation model by leveraging external aggregate data in the presence of population heterogeneity

Leveraging information in aggregate data from external sources to improve estimation efficiency and prediction accuracy with smaller scale studies has drawn a great deal of attention in recent years. Yet, conventional methods often either ignore uncertainty in the external information or fail to account for the heterogeneity between internal and external studies. This article proposes an empirical likelihood-based framework to improve the estimation of the semiparametric transformation models by incorporating information about the t-year subgroup survival probability from external sources. The proposed estimation procedure incorporates an additional likelihood component to account for uncertainty in the external information and employs a density ratio model to characterize population heterogeneity. We establish the consistency and asymptotic normality of the proposed estimator and show that it is more efficient than the conventional pseudopartial likelihood estimator without combining information. Simulation studies show that the proposed estimator yields little bias and outperforms the conventional approach even in the presence of information uncertainty and heterogeneity. The proposed methodologies are illustrated with an analysis of a pancreatic cancer study.     

Small-scale environmental heterogeneity and the analysis of species distributions along gradients

Abstract. The observed distribution of a species along an environmental gradient is strongly affected by environmental variability within a quadrat. Because a quadrat does not represent a point along an environmental gradient, but rather a range of conditions, it is likely to contain species not typically associated with the mean conditions in the quadrat. Systematic relationships exist between a species' true distribution, the observed distribution as a function of mean quadrat environment, and the frequency distribution of the environment within that quadrat. The observed species habitat breadth increases and the observed maximum abundance decreases as within-quadrat environmental heterogeneity increases. If species distributions or beta diversities are to be compared among species or coenoclines, they should be correctedforintra-quadratheterogeneity.Wederive simple corrections for environmental heterogeneity. The distributions of hardwood forest understory species along a soil acidity gradient in the North Carolina piedmont are presented as an example.     

朱鹮繁殖期的活动区和栖息地利用

20 0 0～ 2 0 0 2年 ,我们应用标记识别法和地理信息系统对朱繁殖期的活动性、活动区和栖息地利用进行了研究。结果表明 :朱在越冬期、繁殖期和繁殖后期的觅食距离存在差异 ,分别为 2 82 1± 1 4 88km、0 5 6 3± 0 6 81km和 1 70 6± 0 834km ,但同一时期中不同个体间的觅食距离无显著差异。不同年份中 ,朱在越冬期和繁殖期的觅食距离无显著差异 ;在繁殖后期 ,由于受到干旱等气候因素的影响 ,两年的觅食距离差异显著。一天中觅食距离最远的是 10 :0 0～ 12 :0 0 ,最近的是 0 6 :0 0～ 0 8:0 0。不同时间段中觅食行为的比例差异显著 ,0 6 :0 0～ 10 :0 0和 16 :0 0～ 18:0 0为取食高峰期 ,中午和夜宿前的休息和理羽行为则高于其他时间段。MCP法和 90 %Kernel法的计算结果表明 ,其中 8只观测次数较多的朱在繁殖期的平均活动区面积分别为10 0 8± 4 9 8hm2 和 175 6± 91 3hm2 ,5 0 %Kernel法计算的活动区的核心面积为 4 3 8± 2 1 5hm2 。朱个体间的繁殖活动区重叠强度较大 ,达到各自活动区的 2 4 5 %± 2 7 3%。朱营巢比较密集 ,配对亲鸟间的活动区重叠强度和其他个体的重叠强度无显著差别。栖息地利用研究表明 ,朱对针阔混交林的利用率显著低于研究区内的可利用率 ,对水田的利用     

山地景观遗传学研究文献综述

山地生态系统是生物多样性分布与保护的热点。山地景观遗传学（Mountain Landscape Genetics）研究在山地景观尺度上野生生物的种群遗传格局及其驱动机制和影响因素,是景观遗传学（Landscape Genetics）的重要分支。山地景观遗传学研究对于深入理解物种的空间遗传结构、形成过程、物种形成与分化机制具有重要意义与价值,同时可以为珍稀濒危物种和山地生物多样性的有效保护与管理提供科学指导。为了更好地掌握目前山地景观遗传学的发展趋势与重点研究问题,为未来生物多样性与山地生态系统的保护管理提供科学参考,基于对Web of Science核心数据库和中国知网数据库的系统检索,全面汇总分析了1999-2020年山地景观遗传学领域发表的192篇英文文献与31篇中文文献。结果显示,该领域自2008年起迅速发展,截至2020年共有46个国家的研究机构发表了山地景观遗传相关研究,研究热点地区包括北美洲的落基山脉、内华达山脉、阿巴拉契亚山脉,欧洲的阿尔卑斯山脉、比利牛斯山脉,以及亚洲的喜马拉雅-横断山脉。研究对象类群涵盖真菌、植物、节肢动物、脊椎动物,其中脊椎动物是研究发表最多的类群,占发表文献总数的62.0%;脊椎动物中,又以对哺乳类（占脊椎动物发表文献总数的52.9%）与两栖类（23.5%）的研究最多。目前主要的研究方向包括：（1）识别山地景观中的基因流路径或阻碍;（2）量化山地景观特征对种群遗传结构时空变化的影响。中国是发表山地景观遗传学文章数量最多的亚洲国家,近十年来相关研究发展迅速,研究类群以植物（占在中国发表文献总数的62.3%）与脊椎动物（35.8%）为主,对脊椎动物的研究中以两栖动物为最多（占所有脊椎动物发文数量的52.6%）,研究区域主要集中在喜马拉雅-横断山脉与秦岭。本文进一步对目前山地景观遗传学研究中存在的空缺及未来重点关注问题提出建议。     

Purification and characterization of UDPG:ginsenoside Rd glucosyltransferase from suspended cells of Panax notoginseng

Heterogeneity of ginsenosides is an interesting and important issue because those structure-similar secondary metabolites have different or even totally opposite pharmacological activities. In this work, a new enzyme UDP-glucose:ginsenoside Rd glucosyltransferase (UGRdGT), which catalyzes the formation of ginsenoside Rb₁ from ginsenoside Rd [Biotechnol. Bioeng. 89: 444–52, 2005], was purified approximately 145-fold from suspended cells of Panax notoginseng with an overall yield of 0.2%. Purification to apparent homogeneity, as judged by SDS-PAGE, was successfully achieved by using sequential ammonium sulphate precipitation, anion-exchange chromatography and native PAGE. The enzyme had a molecular mass of 36 kDa, and its activity was optimal at pH 8.5 and 35 °C. The enzyme activity was enhanced by Mn²⁺, Ca²⁺ and Mg²⁺, but strongly inhibited by Zn²⁺, Hg²⁺, Co²⁺, Fe²⁺ and Cu²⁺. The apparent K_m value for UDP-glucose and ginsenoside Rd was 0.32 and 0.14 mM, respectively. The biotransformation yield from ginsenoside Rd to Rb₁ by UGRdGT in 50 mM Tris–HCl buffer at pH 8.5 and 35 °C was over 80%. This work provides a basis for further molecular study on the ginsenoside Rb₁ biosynthesis by P. notoginseng cells and it is also useful for potential application to in vitro biotransformation from ginsenoside Rd to Rb₁.     

Natural hybridization of Japanese <Emphasis Type="Italic">Rhododendron</Emphasis> section <Emphasis Type="Italic">Brachycaryx</Emphasis> in Mount Kintoki in eastern Japan and concerns for genetic diversity in restoring their habitat

Native Rhododendrons section Brachycaryx in eastern Japan are decreasing in their natural habitats and the need to restore these habitats is increasing. Conservation of genetic diversity in restoring habitat requires clarification of the balance of interspecies genetic exchange which occurs in their natural habitats. In well-preserved natural habitats of Rhododendron dilatatum, R. kiyosumense, and R. wadanum and their natural hybrids R.×kuratanum and R.×hasegawai we investigated their geographical distribution, frequency, and flowering period. DNA analysis of the internal transcribed spacer (ITS) region was also conducted to confirm the species related to hybridization. Our findings in the field survey were: (1) Hybridizations occur in the overlap zones of related species. (2) R.×hasegawai occurs more frequently than R.×kuratanum, probably because the flowering seasons of R. kiyosumense and R. wadanum overlap longer than those of R. dilatatum and R. kiyosumense. (3) Natural hybrid occurrence is, nevertheless, under 9% of all related Rhododendrons section Brachycalyx. Analysis of the ITS region suggested that the two hybrids are generated from interspecific gene exchange, i.e., (4) R. dilatatum and R. kiyosumense relate to the formation of R.×kuratanum. (5) R.×hasegawai is a hybrid of R. wadanum and some species other than R. wadanum. On the basis of these findings we delineated several guidelines for restoring habitats of Rhododendrons of Section Brachycaryx with concerns for genetic diversity: (1) Before use, identify plant materials by morphological traits to determine whether they are original species or hybrids. (2) Investigate the distribution of remnant Rhododendrons section Brachycaryx before restoration. (3) Combine plant materials of original species in the natural distribution.