模拟大气氮沉降对中国森林生态系统影响的研究进展

人类活动加剧了活性氮的生产和排放,并导致氮沉降日益增加并全球化。目前,人类活动对全球氮循环的干扰已经超出了地球系统安全运行的界限。中国已成为全球氮沉降的高发区域,高氮沉降已经威胁到生态系统的健康和安全,并成为生态文明建设过程中亟待理清和解决的热点问题。对国际上和中国森林生态系统模拟氮沉降研究的概况进行了综述,并从生物学和非生物学两大过程重点阐述模拟氮沉降增加对中国主要森林生态系统影响的研究进展。中国自2000年以后才开始重视大气氮沉降产生的生态环境问题,中国科学院华南植物园在国内森林生态系统模拟氮沉降试验研究上做出了开创性的贡献。模拟氮沉降研究表明,持续高氮输入将会显著改变森林生态系统的结构和功能,并威胁生态系统的健康发展,特别是处于氮沉降热点区域的中国中南部。森林生态系统的氮沉降效应依赖于系统的氮状态、土地利用历史、气候特征、林型和林龄等。最后,对未来的研究提出了一些建议,包括加强长期跟踪研究和不同气候带站点之间的联网研究,特别是在森林生态系统对长期氮沉降响应与适应的过程机制、地下碳氮吸存潜力研究、以及与其他全球变化因子的耦合研究等方面,以期为森林生态系统的可持续发展提供理论基础和管理依据。     

Mixed-beam approach for high-risk prostate cancer: Carbon-ion boost followed by photon intensity-modulated radiotherapy. Dosimetric and geometric evaluations (AIRC IG-14300)

Background and purposeThe aim was to evaluate dosimetric uncertainties of a mixed beam approach for patients with high-risk prostate cancer (PCa). The treatment consists of a carbon ion radiotherapy (CIRT) boost followed by whole-pelvis intensity-modulated RT (IMRT).Materials and methodsPatients were treated with a CIRT boost of 16.6 Gy/4 fractions followed by whole-pelvis IMRT of 50 Gy/25 fractions, with consequent long term androgen deprivation therapy. Deformable computed tomography image registration (DIR) was performed and corresponding doses were used for plan sum. A comparative IMRT photon plan was obtained as whole-pelvis IMRT of 50 Gy/25 fractions followed by a boost of 28 Gy/14 fractions. DIR performances were evaluated through structure-related and image characteristics parameters.ResultsUntil now, five patients out of ten total enrolled ended the treatment. Dosimetric parameters were lower in CIRT + IMRT than IMRT-only plans for all organs at risk (OARs) except femoral heads.Regarding DIR evaluation, femoral heads were the less deformed OAR. Penile bulb, bladder and anal canal showed intermediate deformation. Rectum was the most deformed. DIR algorithms were patient (P)-dependent, as performances were the highest for P3 and P4, intermediate for P2 and P5, and the lowest for P1.ConclusionsCIRT allows better OARs sparing while increasing the efficacy due to the higher radio-biological effect of carbon ions. However, a mixed beam approach could introduce DIR problems in multi-centric treatments with different operative protocols. The development of this prospective trial will lead to more mature data concerning the clinical impact of implementing DIR procedures in dose accumulation applications for high-risk PCa treatments.     

The 2.5 ? Structure of the Enterococcus Conjugation Protein TraM resembles VirB8 Type IV Secretion Proteins

Conjugative plasmid transfer is the most important means of spreading antibiotic resistance and virulence genes among bacteria and therefore presents a serious threat to human health. The process requires direct cell-cell contact made possible by a multiprotein complex that spans cellular membranes and serves as a channel for macromolecular secretion. Thus far, well studied conjugative type IV secretion systems (T4SS) are of Gram-negative (G−) origin. Although many medically relevant pathogens (e.g., enterococci, staphylococci, and streptococci) are Gram-positive (G+), their conjugation systems have received little attention. This study provides structural information for the transfer protein TraM of the G+ broad host range Enterococcus conjugative plasmid pIP501. Immunolocalization demonstrated that the protein localizes to the cell wall. We then used opsonophagocytosis as a novel tool to verify that TraM was exposed on the cell surface. In these assays, antibodies generated to TraM recruited macrophages and enabled killing of pIP501 harboring Enteroccocus faecalis cells. The crystal structure of the C-terminal, surface-exposed domain of TraM was determined to 2.5 Å resolution. The structure, molecular dynamics, and cross-linking studies indicated that a TraM trimer acts as the biological unit. Despite the absence of sequence-based similarity, TraM unexpectedly displayed a fold similar to the T4SS VirB8 proteins from Agrobacterium tumefaciens and Brucella suis (G−) and to the transfer protein TcpC from Clostridium perfringens plasmid pCW3 (G+). Based on the alignments of secondary structure elements of VirB8-like proteins from mobile genetic elements and chromosomally encoded T4SS from G+ and G− bacteria, we propose a new classification scheme of VirB8-like proteins.     

An alternative formulation for a delayed logistic equation

We derive an alternative expression for a delayed logistic equation, assuming that the rate of change of the population depends on three components: growth, death, and intraspecific competition, with the delay in the growth component. In our formulation, we incorporate the delay in the growth term in a manner consistent with the rate of instantaneous decline in the population given by the model. We provide a complete global analysis, showing that, unlike the dynamics of the classical logistic delay differential equation (DDE) model, no sustained oscillations are possible. Just as for the classical logistic ordinary differential equation (ODE) growth model, all solutions approach a globally asymptotically stable equilibrium. However, unlike both the logistic ODE and DDE growth models, the value of this equilibrium depends on all of the parameters, including the delay, and there is a threshold that determines whether the population survives or dies out. In particular, if the delay is too long, the population dies out. When the population survives, i.e., the attracting equilibrium has a positive value, we explore how this value depends on the parameters. When this value is positive, solutions of our DDE model seem to be well approximated by solutions of the logistic ODE growth model with this carrying capacity and an appropriate choice for the intrinsic growth rate that is independent of the initial conditions.     

有毒物影响和Beddington-DeAngelis型功能性反应的捕食系统的全局吸引性

利用微分方程比较原理,重合度理论中Mawhin’s延拓定理,Lya．punov泛函和Barbalat引理,研究了一类有毒物影响和Beddington—DeAngelis型功能性反应的时滞两种群捕食者-食饵系统．我们得到了该系统一致持久性和其周期系统存在唯一全局渐近稳定的周期解的充分条件．改进了范猛和唐贵坚的相关结果．     

Long-term recruitment dynamics of arctic dwarf shrub communities in coastal east Greenland

Warming-induced biological and ecological responses have been reported from high-northern latitude sites, where changes in dwarf shrub communities translate into complex vegetation-climate feedbacks. Most of the available Arctic tree-ring evidence is, however, restricted to a limited number of species and locations. A combination of wood anatomical and ‘dendro’-ecological techniques provides insights into past growth rates, recruitment dynamics and even community assemblages of Arctic vegetation. Here, we use thin sectioning and ring counting of 1432 dwarf shrub samples from eight species and two tundra regions in coastal east Greenland to assess community recruitment history and its relation to climate. Site and species-specific annual stem increments, as well as estimated plant ages, range from 0.013-0.720 mm and from 4 to 204 years, respectively. The mean ring width is 0.086 mm, with a mean age of 50 years. Decadal-scale recruitment dynamics of the studied vegetation cover respond to Greenlandic summer temperature variations back to the late 19th century (r = 0.7; 1881–2000).     

Mitochondrial dysfunction in fibroblasts of Multiple System Atrophy

Multiple System Atrophy is a severe neurodegenerative disorder which is characterized by a variable clinical presentation and a broad neuropathological spectrum. The pathogenic mechanisms are almost completely unknown. In the present study, we established a cellular model of MSA by using fibroblasts' primary cultures and performed several experiments to investigate the causative mechanisms of the disease, with a particular focus on mitochondrial functioning.Fibroblasts' analyses (7 MSA-P, 7 MSA-C and 6 healthy controls) displayed several anomalies in patients: an impairment of respiratory chain activity, in particular for succinate Coenzyme Q reductase (p?<?0.05), and a reduction of complex II steady-state level (p?<?0.01); a reduction of Coenzyme Q10 level (p?<?0.001) and an up-regulation of some CoQ10 biosynthesis enzymes, namely COQ5 and COQ7; an impairment of mitophagy, demonstrated by a decreased reduction of mitochondrial markers after mitochondrial inner membrane depolarization (p?<?0.05); a reduced basal autophagic activity, shown by a decreased level of LC3 II (p?<?0.05); an increased mitochondrial mass in MSA-C, demonstrated by higher TOMM20 levels (p?<?0.05) and suggested by a wide analysis of mitochondrial DNA content in blood of large cohorts of patients.The present study contributes to understand the causative mechanisms of Multiple System Atrophy. In particular, the observed impairment of respiratory chain activity, mitophagy and Coenzyme Q10 biosynthesis suggests that mitochondrial dysfunction plays a crucial role in the pathogenesis of the disease. Furthermore, these findings will hopefully contribute to identify novel therapeutic targets for this still incurable disorder.     

Dominance of spotted stemborer Chilo partellus Swinhoe (Lepidoptera: Crambidae) over indigenous stemborer species in Africa's changing climates: ecological and thermal biology perspectives

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Global stability of an SEIS epidemic model with recruitment and a varying total population size

This paper considers an SEIS epidemic model that incorporates constant recruitment, disease-caused death and disease latency. The incidence term is of the bilinear mass-action form. It is shown that the global dynamics is completely determined by the basic reproduction number R(0). If R(0)1, a unique endemic equilibrium is globally stable in the interior of the feasible region and the disease persists at the endemic equilibrium.     

生态模型的灵敏度分析

灵敏度分析用于定性或定量地评价模型参数误差对模型结果产生的影响,是模型参数化过程和模型校正过程中的有用工具,具有重要的生态学意义．灵敏度分析包括局部灵敏度分析和全局灵敏度分析．局部灵敏度分析只检验单个参数的变化对模型结果的影响程度;全局灵敏度分析则检验多个参数的变化对模型运行结果总的影响,并分析每一个参数及其参数之间相互作用对模型结果的影响．目前,在对生态模型的灵敏度分析中,越来越倾向于使用全局灵敏度分析的方法．但国内仍多采用局部灵敏度分析方法,很少采用全局灵敏度分析方法．文中详细论述了局部灵敏分析和全局灵敏度分析的主要方法(一次变换法、多元回归法、Morris法、Sobol’法、傅里叶幅度灵敏度检验法和傅里叶幅度灵敏度检验扩展法),希望能为国内生态模型的发展提供一个比较完善的灵敏度分析方法库．结合国内外的灵敏度分析发展现状,指出联合灵敏度研究、灵敏度共性研究及空间直观景观模型的灵敏度分析将为生态模型灵敏度分析研究中的热点和难点．