Genomic regions involved in productivity of two interspecific poplar families in Europe. 1. Stem height, circumference and volume

Interspecific hybrids of Populus species are known for their superior growth. In this study, we examined the effect of the genetic background and contrasting environmental conditions on growth and searched for quantitative trait loci (QTL) affecting growth traits. To this end, two hybrid poplar families resulting from controlled crosses, Populus deltoides ‘S9-2’ × P. nigra ‘Ghoy’ (D × N, 180 F₁) and P. deltoides ‘S9-2’ × P. trichocarpa ‘V24’ (D × T, 182 F₁), were grown at two contrasting sites, Northern Italy and Central France. At the end of the second growing season, tree dimensions (stem height, circumference, and volume) were assessed. The performances of both families significantly differed within and between sites. Tree volume was significantly larger at the Italian site as compared to the French site. Genotype by environment interactions were significant but low for both families and for all growth traits. Tight correlations among the individual growth traits indicated that there may be a common genetic mechanism with pleiotropic effects on these growth traits. In line with previous studies, linkage groups I, VII, IX, X, XVI, XVII, and XIX appeared to have genomic regions with the largest effects on growth traits. This study revealed that (1) both families have high potential for selection of superior poplar hybrids due to the pronounced heterosis (hybrid vigor) and the large genetic variability in terms of growth and (2) the choice of site is crucial for poplar cultivation. Dillen and Storme contributed equally to the work. An erratum to this article can be found at     

相关个体基因型联合概率分布及在身份鉴定中的应用

从联合父系基因概率出发,得出处在同一代的多个个体的联合基因型概率,讨论两种符合我国国情的家谱图,得到同一家族内第m代独生子女之间的联合基因型概率,相应的方法可用来求多个家族、多代独生子女之间的联合基因型概率．列举了两个案例来说明相关个体的联合基因型概率在身份鉴定中的应用．     

Cryptosporidium in wild placental mammals

Cryptosporidium species are common parasites of wild placental mammals. Recent parasitological studies combined with molecular genotyping techniques have been providing valuable new insight into the host specificity and potential transmission of various Cryptosporidium species/genotypes among animals and between these animals and humans. Although Cryptosporidium in wild animals may possess a potential public health problem due to oocyst contamination in the environment, studies at various regions of the world have indicated a strong host-adaptation by these parasites and a limited potential of cross-species transmission of cryptosporidiosis among placental mammals, suggesting that these animals are probably not a major reservoir for human infection. However, Cryptosporidium species/genotypes in placental animals have been reported occasionally in humans. Therefore, public health significance of some Cryptosporidium species in wild placental mammals, such as the cervine genotype, should not be overlooked and should be further studied.     

Food stress sensitivity and flight performance across phosphoglucose isomerase enzyme genotypes in the sooty copper butterfly

Interest in genetic variation at allozyme loci, especially at phosphoglucose isomerase (PGI), has considerably increased over recent decades. In this study, we investigated variation in food stress sensitivity and flight performance, two traits closely linked to individual fitness, across PGI genotypes in the sooty copper butterfly Lycaena tityrus. PGI genotype significantly affected growth rate and pupal mass, but had no overall effect on development time or flight performance. A significant genotype × sex × feeding treatment interaction showed that females from the rarest genotypes showed the strongest increase in development time under food stress. At the same time, these females exhibited the weakest reduction in body mass compared to non food-stressed individuals, while the most common PGI genotypes showed the highest reduction (significant interaction between genotype and feeding treatment). Such results suggest that effects of food stress on pupal mass may not pose a particularly strong selective pressure in L. tityrus. Generally, sex-specific differences in and effects of food stress on life-history traits were as expected, with, e.g., males showing a more rapid development, lower pupal mass and better flight performance than females.     

The effect of rearing experience and TPH2 genotype on HPA axis function and aggression in rhesus monkeys: A retrospective analysis

Gene-environment (G × E) interactions contribute to the development of many neuropsychiatric disorders. Tryptophan hydroxylase-2 (TPH2) synthesizes neuronal serotonin and is closely related to the hypothalamic-pituitary-adrenal (HPA) axis, while early life experience is a critical environmental factor programming the HPA axis response to stress. This retrospective study investigated G × E interaction at the TPH2 locus in rhesus monkeys. Twenty-eight adult, male rhesus monkeys of Indian origin, either mother-reared or peer-reared as infants, were involved in this study. These monkeys have been previously genotyped for the functional A2051C polymorphism in rhTPH2, and had been physiologically and behaviorally characterized. rhTPH2 A2051C exerted a significant main effect (CC > AA&AC) on the cerebrospinal fluid (CSF) level of 5-hydroxyindole-3-acetic acid (5-HIAA; F_(1,14) = 6.42, p = 0.024), plasma cortisol level in the morning (F_(1,18) = 14.63, p = 0.002) and cortisol response to ACTH challenge (F_(1,17) = 6.87, p = 0.018), while the rearing experience showed a significant main effect (PR > MR) on CSF CRH (F_(1,20) = 11.66, p = 0.003) and cage shaking behavior (F_(1,27) = 4.45, p = 0.045). The effects of rhTPH2 A2051C on the afternoon cortisol level, plasma ACTH level, dexamethasone suppression of urinary cortisol excretion, and aggression were dependent upon the rearing experience. These results were not confounded by the functional C77G polymorphism in the mu-opioid receptor (MOR). The present study supports the hypothesis that rearing experience and rhTPH2 A2051C interact to influence central 5-HT metabolism, HPA axis function, and aggressive behaviors. Our findings strengthen the involvement of G × E interactions at the loci of serotonergic genes and the utility of the nonhuman primate to model G × E interactions in the development of human neuropsychiatric diseases.     

Disparate infection patterns of Ceratomyxa shasta (Myxozoa) in rainbow trout (Oncorhynchus mykiss) and Chinook salmon (Oncorhynchus tshawytscha) correlate with internal transcribed spacer-1 sequence variation in the parasite

Ceratomyxa shasta is a virulent myxosporean parasite of salmon and trout in the Pacific Northwest of North America. The parasite is endemic in the Klamath River, Oregon/California, where a series of dams prevent movement of fish hosts between the upper and lower parts of the basin. Ceratomyxa shasta exhibits a range of infection patterns in different fish species above and below the dams. We hypothesised that the variations in infection and disease are indicators that different strains of the parasite exist, each with distinct host associations. Accordingly, we sought to identify strain-specific genetic markers in the ssrRNA and internal transcribed spacer region 1 (ITS-1). We examined 46 C. shasta isolates from water samples and two fish hosts, from June 2007 field exposures at upper and lower Klamath River sites with similarly high parasite densities. We found 100% of non-native rainbow trout became infected and died at both locations. In contrast, mortality in native Chinook salmon was <10% in the upper basin, compared with up to 40% in the lower basin. Parasite ssrRNA sequences were identical from all fish. However, ITS-1 sequences contained multiple polymorphic loci and a trinucleotide repeat (ATC)_0-3 from which we defined four genotypes: 0, I, II and III. Non-native rainbow trout at both sites were infected with genotype II and with a low level of genotype III. Chinook salmon in the upper basin had genotypes II and III, whereas in the lower basin genotype I predominated. Genotype I was not detected in water from the upper basin, a finding consistent with the lack of anadromous Chinook salmon there. Genotype O was only detected in water from the upper basin. Resolution of C. shasta into sympatric, host-specific genotypes has implications for taxonomy, monitoring and management of this significant parasite.     

Prediction of crop response by linearisation about control approximation

A new method for modelling genotype x environment interaction: APLAT. The yield predicted by a crop-simulation model is developed as a Taylor series in the neighbourhood of a parameter vector of a control genotype. With this local linearisation, these genotype parameters can be estimated by a linear regression of the observed yield on the derivatives of the crop-simulation model predictions with respect to its parameters.     

Population differentiation in climate sensitivity of resin duct formation during growth resumption in Pinus pinaster

To counteract the effects of herbivores and pathogens, conifers have developed a sophisticated resin-based defensive system. Since defences are costly, trees must continuously accommodate defensive investment throughout plastic responses to environmental stimuli. However, the extent of such responses can differ at the intra-specific level (i.e. genetic variation in plasticity). Here we examined whether and to what extent year-to-year climate fluctuations, an important source of environmental heterogeneity during the trees' life, drive plasticity in defensive allocation of a widespread pine species. Specifically, we quantified interannual variation in resin duct production along a 31-year-period in 174 Pinus pinaster trees of nine range-wide populations grown in two common gardens in Central Spain. We aimed to explore (i) patterns of interannual variation (i.e., temporal plasticity) in resin duct production among populations and sites, (ii) whether such patterns are linked to plastic responses to interannual variation in climate conditions (i.e., climatic plasticity), and (iii) whether plastic responses to climate differ among populations (i.e., genetic variation in plasticity) and sites. We found large interannual plasticity in resin duct production (22.8 % of total variance), with temporal patterns differing among sites and populations. Climate conditions during the early growth period significantly affected the annual differentiation of resin ducts. Particularly, April precipitation had a positive overall effect on resin duct production. Inversely, warmer conditions in April had a negative effect but only in certain populations, which demonstrates genetic variation in climate sensitivity of resin duct formation. Despite significant effects of certain climate variables on annual resin duct production, climate only accounted for a small proportion of the total interannual variation (up to 3.8 % of interannual variation explained by climate factors). This suggests that alternative factors such as trade-offs with growth and temporal variation in biotic and non-climatic abiotic conditions likely contribute to explain interannual fluctuations in defensive investment.     

Genotyping of Acanthamoeba isolates from clinical and environmental specimens in Iran

In this study, 15 Acanthamoeba isolates from AK patients and 10 environmental samples (water, soil and animal-origin samples) were classified at the genotype level based on the sequence analysis of the Diagnostic Fragment 3 (DF3) of Acanthamoeba small subunit rRNA gene. The obtained results revealed that most of these Acanthamoeba strains belonged to genotype T4 both in clinical and environmental samples. The presence T11 genotype in clinical samples was also revealed after the genotyping analysis and to our knowledge this is the first report of T11 genotype in Iran. Moreover, the isolation of T4 genotype from cow faeces in this study highlights a possible transmission of Acanthamoeba through animal faeces in Iran.Overall, the widespread distribution of pathogenic Acanthamoeba T4 across the environmental sources and the increasing number of contact lens wearers in Iran, demands more awareness within the public and health professionals as this pathogen is emerging as a risk for human health in Iran and worldwide.