胶质母细胞瘤预后相关基因的数据挖掘分析

胶质母细胞瘤(glioblastoma,GBM)是恶性程度最高的颅内恶性肿瘤,目前临床上缺乏有效治疗药物,复发率高且预后差,开发新的抗GBM药物是目前临床上亟待解决的问题。为了筛选与GBM预后密切相关的基因,为寻找新的药物靶点提供线索,采用GEO2R工具从GEO数据库中的269个肿瘤组织和61个正常组织中初步筛选出差异表达基因,然后利用Cluster Profiler数据库进行基因功能富集分析,STRING及Cytoscape进一步筛选出37个差异表达基因,采用GEPIA交互分析对这37个基因在GBM肿瘤组织中的表达进行验证。为了进一步探索这些差异表达基因与患者预后的关系,研究中利用GEPIA工具对TCGA数据库中与患者预后相关的数据进行深入挖掘,最终发现PTTG1、RRM2、E2F7与患者中位生存期呈显著性负相关。研究筛选出的与患者预后密切相关的基因不仅可以为评估患者预后提供参考,同时也为开发新的抗GBM药物提供了潜在的靶点。     

高山峡谷地区无线电遥测与GPS 空间定位的比较:野外放归大熊猫的跟踪定位

以佩戴具有无线电发射功能的GPS 颈圈(Lotek GPS_ 4400M) 的放归大熊猫“祥祥”作为目标动物, 2006 年4 月至2007 年2 月,采用无线电遥测技术(RT)和GPS 跟踪技术在卧龙自然保护区的“五一棚”区域, 每日监测大熊猫在野外环境下的生存状况、移动规律和觅食行为。为了比较RT 和GPS 在高山峡谷地区空间定位的可行性和有效性,我们引入空间定位率、地形特征、空间定位差、巢域大小和日移动距离等指标来分析RT 和GPS 之间的定位差异。结果表明:RT 的空间定位效率明显高于GPS 的自动定位(P < 0. 001),分别是54.1%(绘图法)和45. 2% (≧ 2D);不同月份RT 和GPS 的空间定位率之间具有显著性差异(P < 0. 05),这与大熊猫不同月份的海拔活动范围和觅食行为特性密切相关。RT 位点的地形指数中坡度高于GPS,坡向和海拔高度较GPS 定位点低,两种无线电遥测方法(两点直接计算法和绘图法)之间没有显著性差异(P > 0.05);同一天位点之间的距离(空间定位差)平均450 ～ 660 m 左右;RT 与GPS 所估测的大熊猫巢域大小,除5 月、9 月和12月RT 低于GPS 外,其余月份为前者高于后者,但无显著性差异(P > 0. 05);日移动距离除12 月份RT 小于GPS 外,其余月份都呈现出RT 大于GPS 的格局,统计检验结果两者之间差异显著(P < 0. 05);两种无线电遥测方法所测指数之间都无明显差异(P > 0. 05)。这说明RT 遥测和GPS 定位都可以应用于高山峡谷地区野生动物的生态学研究,而且GPS 无线电颈圈在亚高山和高山森林中具有可行性和有效性。     

机械化保护性耕作条件下土壤质量的数值化评价

通过9年的长期田间定位试验研究了陕西关中平原中部冬小麦 夏玉米轮作条件下深松耕（ST）、旋耕（RT）、秸秆还（SR）、免耕（NTS）等保护性耕作措施及传统耕作（TT）对土壤理化性状和作物产量的影响,并采用主成分分析方法进行土壤质量的综合评价.结果表明：与传统耕作相比,保护性耕作模式提高了土壤肥力质量,改善了土壤物理环境条件;显著提高了土壤脲酶和碱性磷酸酶的活性;除秸秆覆盖免耕处理的玉米和小麦产量低于传统耕作外,其他保护性耕作措施均不同程度地提高了作物产量,其中小麦增产13%～28%,玉米增产3%～12%.与传统耕作相比,保护性耕作土壤质量指数提高了19.8%～44.0%.综合考虑经济效应和生态效益,隔年深松、秸秆粉碎联合旋耕作业以及秸秆覆盖联合深松作业不仅能增加作物产量还可改善土壤质量,可在研究区进行推广应用.     

Morphological and Molecular Characterization of Longidorus americanum n. sp. (Nematoda: Longidoridae), a Needle Nematode Parasitizing Pine in Georgia

We describe and illustrate a new needle nematode, Longidorus americanum n. sp., associated with patches of severely stunted and chlorotic loblolly pine, (Pinus taeda L.) seedlings in seedbeds at the Flint River Nursery (Byromville, GA). It is characterized by having females with a body length of 5.4-9.0 mm; lip region slightly swollen, anteriorly flattened, giving the anterior end a truncate appearance; long odontostyle (124-165 µm); vulva at 44%-52% of body length; and tail conoid, bluntly rounded to almost hemispherical. Males are rare but present, and in general shorter than females. The new species is morphologically similar to L. biformis, L. paravineacola, L. saginus, and L. tarjani but differs from these species either by the body, odontostyle and total stylet length, or by head and tail shape. Sequence data from the D2-D3 region of the 28S rDNA distinguishes this new species from other Longidorus species. Phylogenetic relationships of Longidorus americanum n. sp. with other longidorids based on analysis of this DNA fragment are presented. Additional information regarding the distribution of this species within the region is required.     

Movements of two Svalbard polar bears recorded using geographical positioning system satellite transmitters

Until recently, studies on polar bear (Ursus maritimus) movements and space use have used data collected by satellite telemetry collars that provided positions infrequently (typically weekly) and with low precision (by Doppler Shift method). A new generation of transmitters incorporated into collars use the Global Positioning System (GPS) to provide highly accurate positions, and have the ability to provide many positions per day. We used data from two GPS collars fitted to female polar bears, that attempted to collect six positions per day (4-h apart) for 546 days (from April 2000 to September 2001) and 413 days (from April 2000 to May 2001) to estimate how estimated speed of movement and home range size increase with increasing number of data points. Using all the positions, we estimated that the bears moved a minimum of 14.3 and 15.8 km per day on average. The fractal dimension (D) of the movement pathways for the two bears were D = 1.28 and 1.31, respectively, indicating low tortousity of the movements. Their minimum estimated annual home range areas were 20,794 and 112,183 km². Simulations showed that a commonly used sampling regime of one location every 6th day would have significantly underestimated the movement rates and the home range sizes compared to our estimates. We also used the high accuracy of GPS positions to look at distances moved within 4-h periods. Maximum movement rate during a 4-h period for the two bears was 4.21 and 4.58 km/h, respectively. Variation in median values by month was significant (0.01 km/h in November for N23476 to 1.48 km/h in December for N7955). Diurnal variation was observed to differ between defined periods.     

卫星跟踪猎隼失联案例分析

猎隼(Falco cherrug)是迅速濒危中的物种。对近10年卫星跟踪的67只猎隼进行国籍、性别、信号时长、失联月份统计,分析其死亡原因、受威胁因素以及年返回率。就其中2016年来自俄罗斯和蒙古的10只猎隼进行更详细的死因分析,当发射器不再返回信息时,前往GPS最后位点,在一定区域内进行拉网式搜索,并分析周围的环境和动物痕迹,将找到的尸体进行解剖,查找死亡原因。结果显示,这67只猎隼中雌鸟有37只,占总数的55.2%,雄鸟有29只,另1只性别未知。其平均信号时长为(201±129.94)d(n=64),小于200 d的占60.9%,小于400 d的占92.2%。年返回率为31.4%;在秋季和初冬季(8～12月)失联的占67.2%。而2016年跟踪的10只猎隼中,获取4只失联猎隼的信息,1只在蒙古国被猎杀,1只死因不详,1只在中国因电击死亡,1只在中国因擦碰和饥饿死亡。卫星跟踪数据显示,猎隼的年返回率明显降低,表明猎隼的处境不容乐观,这引发了猛禽研究专家的担忧。