Between- and within-host species selection on cytoplasmic incompatibility-inducing Wolbachia in haplodiploids

Abstract The most common effect of the endosymbiont Wolbachia is cytoplasmic incompatibility (CI), a form of postzygotic reproductive isolation that occurs in crosses where the male is infected by at least one Wolbachia strain that the female lacks. We revisited two puzzling features of Wolbachia biology: how Wolbachia can invade a new species and spread among populations, and how the association, once established in a host species, can evolve, with emphasis on the possible process of infection loss. These questions are particularly relevant in haplodiploid species, where males develop from unfertilized eggs, and females from fertilized eggs. When CI occurs in such species, fertilized eggs either die (female mortality type: FM), or develop into males (male development type: MD), raising one more question: how transition among CI types is possible. We reached the following conclusions: (1) the FM type is a better invader and should be retained preferentially after a new host is captured; (2) given the assumptions of the models, FM and MD types are selected on neither the bacterial side nor the host side; (3) selective pressures acting on both partners are more or less congruent in the FM type, but divergent in the MD type; (4) host and symbiont evolution can drive infection to extinction for all CI types, but the MD type is more susceptible to the phenomenon; and (5) under realistic conditions, transition from MD to FM type is possible. Finally, all these results suggest that the FM type should be more frequent than the MD type, which is consistent with the results obtained so far in haplodiploids.     

Measuring the trophic ecology of ants using stable isotopes

Ants are prominent components of most terrestrial arthropod food webs, yet due to their highly variable diet, the role ants play in arthropod communities can be difficult to resolve. Stable isotope analysis is a promising method for determining the dietary history of an organism, and has the potential to advance our understanding of the food web ecology of social insects. However, some unique characteristics of eusocial organisms can complicate the application of this technique to the study of their trophic ecology. Using stable isotopes of N and C, we investigated levels of intraspecific variation both within and among colonies. We also examined the effect of a common preservation technique on δ¹⁵N and δ¹³C values. We discuss the implications of our results on experimental design and sampling methods for studies using stable isotopes to investigate the trophic ecology of social insects. Received 4 February 2005; revised 23 June 2005; accepted 4 July 2005.     

Genomic GC level, optimal growth temperature, and genome size in prokaryotes

Two years ago, we showed that positive correlations between optimal growth temperature (T(opt)) and genome GC are observed in 15 out of the 20 families of prokaryotes we analyzed, thus indicating that "T(opt) is one of the factors that influence genomic GC in prokaryotes". Our results were disputed, but these criticisms were demonstrated to be mistaken and based on misconceptions. In a recent report, Wang et al. [H.C. Wang, E. Susko, A.J. Roger, On the correlation between genomic G+C content and optimal growth temperature in prokaryotes: data quality and confounding factors, Biochem. Biophys. Res. Commun. 342 (2006) 681-684] criticize our results by stating that "all previous simple correlation analyses of GC versus temperature have ignored the fact that genomic GC content is influenced by multiple factors including both intrinsic mutational bias and extrinsic environmental factors". This statement, besides being erroneous, is surprising because it applies in fact not to ours but to the authors' article. Here, we rebut the points raised by Wang et al. and review some issues that have been a matter of debate, regarding the influence of environmental factors upon GC content in prokaryotes. Furthermore, we demonstrate that the relationship that exists between genome size and GC level is valid for aerobic, facultative, and microaerophilic species, but not for anaerobic prokaryotes.     

食物水平和初始体重对杂交罗非鱼生长和个体生长分化的影响

将72尾杂交罗非鱼分别养在12个水槽内,每个水槽内养6尾大小不同的鱼(A、B、C、D、E、F),其中鱼A的初始体重为62．69±1．46g,B为56．48±1．30g,C为50．75±1．19g,D为35．56±1．18g,E为31．05±0．88g,F为27。35±0．95g(平均值±标准误)．在4周实验中,实验鱼分别被停食或每天按体重1．5％、3．0％和饱食水平投喂．鱼的特定生长率(SGR)和食物效率(FE)先随食物水平增加而增加,当食物水平超过鱼体重的3．0％后,继续增加投喂量,SGR不再升高而FE明显下降．按体重1．5％投喂的鱼SGR和终体重个体间变异较大．对鱼A而言,食物水平超过体重1．5％后对其SGR无显著影响,但对鱼F而言,食物水平对SGR影响较大．结果表明,杂交罗非鱼的生长和个体生长分化与食物条件和初始体重有关,当食物水平超过体重的3．0％后,鱼的SGR较高,个体生长分化相对较轻．     

基于人地关系视角的鄱阳湖水陆交错带范围划分

水陆交错带是典型的过渡性地理空间,是地理学研究的关键样带,承载着特殊且复杂的人地关系。根据鄱阳湖过水性、吞吐型、季节性特点,考虑行政区划完整性与尺度效应,基于高分辨率遥感影像和长时间序列水位变化数据,利用非监督分类、目视解译、调查验证等方法,从自然和行政区划两个维度划分了鄱阳湖水陆交错带的地域范围,阐述了其自然、经济和社会等基本特征,分析了其理论基础、现实意义及科学内涵。研究表明：(1)鄱阳湖水陆交错带最大自然范围约为2508.08 km~2,行政范围涉及11个县(市、区)78个乡镇单元,包含行政村974个;(2)其景观要素变化多样,经济发展主要以生态农业、生态旅游业为主,人口分布呈现带状特征,与交错带范围高度吻合;(3)自然基础、尺度效应和内涵特征是其范围划分的理论基础,探究其人与环境相互作用的过程、机理与规律是重要现实意义;(4)未来可以从景观格局变化、人地关系分解、社会生活变迁等方面开展进一步研究,以揭示该区域特殊人地关系变化。     

Morphological characteristics of leaf epidermis and size variation of leaf, flower and fruit in different ploidy levels in Buddleja macrostachya (Buddlejaceae)

Buddleja macrostachya (Buddlejaceae) is a widespread shrub native to the Sino-Himalayan mountains and beyond. It has been found to occur at two ploidy levels, hexaploid, 2n=6x=114 and dodecaploid, 2n=12x=228. To determine if morphological characters might be used as indicators of ploidy levels, we measured floral and fruit length, relative and absolute leaf size, trichome density on both leaf surfaces, and stomatal density and length in different populations of B. macrostachya. In general, flower and fruit length, absolute leaf size, and stomatal length increased with an increase at ploidy level (P<0.01), whereas adaxial cell and stomatal density decreased with an increase at ploidy level (P<0.01). We found no conspicuous differences in relative leaf size (P>0.05) in different populations. Other characters studied such as trichome type, cuticular membrane and ornamentation of stomata, cell and stomatal shape, and anticlinal wall pattern were quite constant in this species. Thus it appears that flower and fruit length, absolute leaf size, and stomatal frequency and length can be used to distinguish hexaploid from dodecaploid cytotypes either in the field or in herbarium specimens.     

Low rates of expression profile divergence in highly expressed genes and tissue-specific genes during mammalian evolution

Evolutionary rates provide important information about the pattern and mechanism of evolution. Although the rate of gene sequence evolution has been well studied, the rate of gene expression evolution is poorly understood. In particular, it is unclear whether the gene expression level and tissue specificity influence the divergence of expression profiles between orthologous genes. Here we address this question using a microarray data set comprising the expression signals of 10,607 pairs of orthologous human and mouse genes from over 60 tissues per species. We show that the level of gene expression and the degree of tissue specificity are generally conserved between the human and mouse orthologs. The rate of gene expression profile change during evolution is negatively correlated with the level of gene expression, measured by either the average or the highest level among all tissues examined. This is analogous to the observation that the rate of gene (or protein) sequence evolution is negatively correlated with the gene expression level. The impacts of the degree of tissue specificity on the evolutionary rate of gene sequence and that of expression profile, however, are opposite. Highly tissue-specific genes tend to evolve rapidly at the gene sequence level but slowly at the expression profile level. Thus, different forces and selective constraints must underlie the evolution of gene sequence and that of gene expression.     

不同时期北部湾日本带鱼营养生态位差异

基于2008-2009年和2018年对北部湾 日本带鱼的采样,通过测定碳氮稳定同位素,计算其营养级、营养生态位等指标,对比分析10年前后日本带鱼营养生态位的差异,探究其生态适应能力的变动.结果表明:2个时期北部湾日本带鱼碳稳定同位素(δ13C)值差异明显,2018年δ13C值范围变窄,平均值变小,推测 日本带鱼食物来源...     

Proteomics and systems biology to tackle biological complexity: Yeast as a case study

In this note we discuss how, by using budding yeast as model organism (as has been done in the past for biochemical, genetics and genomic studies), the integration of "omics" sciences and more specifically of proteomics with systems biology offers a very profitable approach to elucidating regulatory circuits of complex biological functions.