Genetic resources of Tunisian Artemisia arborescens L. (Asteraceae), pattern of volatile metabolites concentration and bioactivity and implication for conservation

Artemisia arborescens L. (Asteraceae) is an endemic and a valuable medicinal and ornamental species in the Mediterranean regions. Despite the interest given to A. arborescens L. as promising medicinal crop, this species is becoming threatened of extinction in Tunisia as a result of the fragmentation of its habitat and the absence of any specific measures for its conservation and valorisation. Based on the last considerations, extent information about their volatile metabolites profiling, contents and antimicrobial potential were undertaken based on fourteen populations originated from various geographical and bioclimatic habitats of Tunisia. The obtained results reveal an essential oil content mean value of 1.47%. The leaves of Tunisian tree wormwood populations were dominated by camphor (15.05–58.05%), chamazulene (11.72–45.26%) and β-thujone (0–36.53%). Based on the three first major compounds detected for each population, four different oil types were defined (Oil type I: camphor-chamazulene-β-thujone; Oil type II: camphor-chamazulene-terpinen-4-ol; Oil type III: camphor-chamazulene-bornyl acetate; Oil type IV: camphor-chamazulene-linalool). PCA, HCA and Heatmap chemometric analyses revealed three classification clusters defined mainly by minor compounds. These minor volatile metabolites succeed to discriminate among the fourteen studied populations which promote their chemotaxonomic interest. Our findings confirm previous reports concerning this species in the world and show chamazulene, camphor and β-thujone as the major compounds of this species which define their well known chemotypes independently of the geographical, bioclimatic and genotypic factors. This makes of these three components promising chemosystematic tool for the discrimination of A. arborescens L. in the genus Artemisia. The results showed that the four tested oils were effective against the nine tested microbial strains. The highest antimicrobial potential was revealed for the population AAr_MB characterized by camphor, chamazulene and β-thujone as the dominant components. The pattern of essential oils concentration offers wide range of possibilities for the initiation of breeding programs according to the desired bioactive compounds. Both in situ and ex situ conservation strategies were suggested for the maintenance of the highest chemical polymorphism of this valuable medicinal species.     

Synthetic biology and metabolic engineering of actinomycetes for natural product discovery

Actinomycetes are one of the most valuable sources of natural products with industrial and medicinal importance. After more than half a century of exploitation, it has become increasingly challenging to find novel natural products with useful properties as the same known compounds are often repeatedly re-discovered when using traditional approaches. Modern genome mining approaches have led to the discovery of new biosynthetic gene clusters, thus indicating that actinomycetes still harbor a huge unexploited potential to produce novel natural products. In recent years, innovative synthetic biology and metabolic engineering tools have greatly accelerated the discovery of new natural products and the engineering of actinomycetes. In the first part of this review, we outline the successful application of metabolic engineering to optimize natural product production, focusing on the use of multi-omics data, genome-scale metabolic models, rational approaches to balance precursor pools, and the engineering of regulatory genes and regulatory elements. In the second part, we summarize the recent advances of synthetic biology for actinomycetal metabolic engineering including cluster assembly, cloning and expression, CRISPR/Cas9 technologies, and chassis strain development for natural product overproduction and discovery. Finally, we describe new advances in reprogramming biosynthetic pathways through polyketide synthase and non-ribosomal peptide synthetase engineering. These new developments are expected to revitalize discovery and development of new natural products with medicinal and other industrial applications.     

Variability of the essential oil of Viola etrusca

Essential oils obtained from different populations of Viola etrusca from Italy have been analysed to verify the phenotypic discontinuity observed in a previous study. All of the essential oils contained methyl salicylate as a main constituent. However, multivariate analysis showed differences among some populations, in particular between northern and southern ones. Results suggest that this species could be undergoing a slow schizogenetic differentiation process due to its genetic isolation.     

Chemical composition of the attachment pad secretion of the locust Locusta migratoria

This study is the first attempt to characterise the chemical composition of the secretion of the smooth pads of the locust Locusta migratoria and to relate this to the composition of the cuticle coverage of the pads and the wings. Gas-chromatography and mass-spectrometry (GC-MS) were the principal techniques used for the characterization of these materials. Secretion droplets were visualised and quantified with the aid of diverse microscopic techniques. The chemical composition of prints is shown to differ from the cuticle coverage, in particular, with respect to the fatty acid distribution: in the secretion, saturated and unsaturated fatty acids with chain lengths between C₁₆ and C₂₀ in both the free form and as glycerides predominate, whereas cuticle coverage contains waxes of long-chained fatty-acids bound to long-chain primary alcohols. The second important difference is the significant amount of glucose and other saccharides found in methanolyzates of the pad fluid. A considerable amount of the amino acids (up to 53%) was detected in the non-volatile portion of the fluid. Data obtained from the shock-freezing, carbon-platinum coating and replica preparation show that the secretory droplets contain nano-droplets on their surfaces. The results lead us to suggest that the pad secretion is an emulsion consisting of lipidic nano-droplets dispersed in an aqueous liquid. According to the chemical composition of the secretion, a high-viscosity of the fluid may be suggested. Presumably, the fluid is a kind of a coupling agent, promoting and strengthening adhesion between otherwise incompatible materials by providing the proximity of contact for intermolecular forces.     

Glandular hairs of Sigesbeckia jorullensis Kunth (Asteraceae): morphology,histochemistry and composition of essential oil

Long-stalked glandular hairs of outer and inner involucral bracts of Sigesbeckia jorullensis, which are important for epizoic fruit propagation, were investigated using light and scanning electron microscopy. The essential oil secreted by the hairs was analysed by chromatographic methods including gas chromatography/mass spectrometry and with a laser microprobe mass analyser. The glandular hairs consisted of a large multicellular stalk and a multicellular secreting head. The apical layer of glandular head cells was characterized by leucoplasts and calcium oxalate crystals. Below the apical cells there were up to six layers of cells containing many chloroplasts around the nucleus and surrounded by vacuoles filled with flavonoids and tannins. The essential oil originating in the head cells was secreted into the subcuticular space and may be liberated by rupture of the cuticle. It was mainly composed of sesqui- and diterpenes, with the sesquiterpene hydrocarbon germacrene-D as the main component. Monoterpenes, n-alkanes and their derivatives as well as flavonoid aglycones were also detected. The stickiness of the essential oil is probably associated with the high content of oxygenated sesqui- and diterpenes. In addition to long-stalked trichomes, small biseriate trichomes occurred, secreting small quantities of essential oil into a subcuticular space.     

Effects of culture conditions on the mycolic acid composition of isolates of Rhodococcus spp. from activated sludgefoams

The influence of two different carbon sources and three incubation temperatures on the mycolic acid compositions of three Rhodococcus isolates from activated sludge was examined using Selective Ion Monitoring (SIM) gas chromatography-mass spectrometry (GC-MS). Considerable qualitative and quantitative differences were detected in the mycolic acid compositions of the three very closely related isolates grown under the same conditions. Culture age also affected both the chain lengths and proportions of saturated mycolic acids detected in cell extracts, but not in the same manner for each isolate. Mycolic acids generally were of shorter chain lengths in cells grown with Tween 80 compared to glucose grown cells in strain 11R but the opposite situation occurred with strains A7 and D5. In all three, the proportion of unsaturated mycolic acids decreased with increasing growth temperatures. The taxonomic relevance of these observations and possible explanations for the observed changes in mycolic acid composition under various culture conditions are discussed.     

Endogenous isoprenoid and aromatic cytokinins in different plant parts of Cocos nucifera (L.)

The present study reports the analyses of both isoprenoid and aromatic cytokinins in the coconut palm by combined high performance liquid chromatography and group specific enzyme immunoassays (HPLC-ELISA). The results showed that the isoprenoid cytokinins were several fold more abundant than the aromatic cytokinins in each of the plant parts analysed: immature inflorescence, shoot apical meristem (SAM), spear leaf and embryo. Within the isoprenoid cytokinins, the most abundant ones by type were the zeatin- (Z-), the isopentenyladenine- (iP-) and the dihydrozeatin- (DHZ-) type in decreasing order for most plant parts studied, and individually, zeatin riboside (ZR) or zeatin riboside-5-monophosphate (ZR5P) depending on the part. In the case of the iP-type cytokinins, the results showed that its 9-glucoside was the most abundant one in most parts. The isoprenoid cytokinin profiles in coconut showed a predominant pattern of 9-conjugation as a major metabolism route for these cytokinins. Analyses also showed the occurrence of the aromatic cytokinin 6-benzylaminopurine (BAP) and its riboside (BAPR), 9-glucoside (BAP9G), and nucleotide (BAPR5P). Their presence in coconut palm was unequivocally identified after permethylation by gas chromatography-mass spectrometry. They were more concentrated in the embryo and in the immature inflorescence than in the other two parts studied, however their concentration in each part was several times lower than that of isoprenoid cytokinins. All four were detected in each of the parts studied. The most abundant ones were BAPR and BAP9G in immature inflorescence; and BAPR in all of the other parts. When all cytokinins analysed are considered, differences between the plant parts studied were found. The zygotic embryos showed the highest content, double that in immature inflorescence, and five times more that in spear leaf and SAM. These differences are even greater when individual cytokinins are compared.     

Evaluation of triterpenols and sterols as organic matter biomarkers in a mangrove ecosystem in northern Brazil

Mangrove leaves, sediment, and excrementfrom the mangrove crab Ucidescordatus from the coastal areas of theBragança peninsula in North Brazil wereanalysed to determine suitable biomarkersfor mangrove-derived organic matter. Leavesof Rhizophora mangle (red mangrove),the dominant species in the area, werecharacterised by high amounts of-amyrin, germanicol, taraxerol, andlupeol. Avicennia germinans (blackmangrove) mainly contained betulin, lupeol,and -sitosterol, whereas significantquantities of -sitosterol and lupeolwere typical of Laguncularia racemosa(white mangrove), the locally leastabundant species. Except for betulin, theexcrement of U. cordatus containedall of the above substances, but moststrongly reflected the triterpenolsignature of R. mangle leaves, thepredominant diet of this crab. Surfacesediments from various mangrove locationshad relatively uniform compositions thatpossibly reflect tidal mixing. Sedimentextracts were dominated by taraxerol andcontained smaller amounts of-amyrin, germanicol, and lupeol.Only sediments in a marsh area, dominatedby Sporobolus virginicus (seashoredropseed) and Eleocharis sp. (spikerush), revealed a differentbiomarker distribution. Core samples ofsubrecent sediment (up to 4000 ¹⁴C yrBP), for which previous pollen analysisindicated vegetation dominated bymangroves, had compositions similar to thatof the surface sediment. Taraxerol was themain component in the examined mangrovesediments and may be a marker for mangrovematter in this region, although analysis ofplant material did not unequivocallysupport this. Germanicol is suggested to bea biomarker for organic matter from R.mangle in North Brazil. It was detected inolder sediments, and was not significantlyaffected by ingestion by land crabs.     

Composition of volatiles of banana cultivars from Madeira Island

The composition of the volatiles of banana fruit from various cultivars grown on Madeira Island has been determined. Using GC-MS, the volatiles were shown to be complex mixtures of several classes of components, mainly esters, alcohols, aldehydes, ketones and acids. The average contents of the total volatiles from cultivars "Dwarf Cavendish", "Giant Cavendish", "Robusta" and "Williams" were 93.0, 116.5, 157.3 and 157.0 mg/kg, respectively. The ester and alcoholic fractions appear to play a decisive role in the organoleptic characteristics of banana fruit, presenting a substantial content ranging from 57.2 to 89.8 mg/ kg and 19.0 to 47.7 mg/kg, respectively, in all cultivars from Madeira Island studied. 3-Methyl butyl butanoate ester was the major constituent.     

Technical advance: simultaneous analysis of metabolites in potato tuber by gas chromatography-mass spectrometry

A new method is presented in which gas chromatography coupled to mass spectrometry (GC-MS) allows the quantitative and qualitative detection of more than 150 compounds within a potato tuber, in a highly sensitive and specific manner. In contrast to other methods developed for metabolite analysis in plant systems, this method represents an unbiased and open approach that allows the detection of unexpected changes in metabolite levels. Although the method represents a compromise for a wide range of metabolites in terms of extraction, chemical modification and GC-MS analysis, for 25 metabolites analysed in detail the recoveries were found to be within the generally accepted range of 70-140%. Further, the reproducibility of the method was high: the error occurring in the analysis procedures was found to be less than 6% for 30 out of 33 compounds tested. Biological variability exceeded the systematic error of the analysis by a factor of up to 10. The method is also suited for upscaling, potentially allowing the simultaneous analysis of a large number of samples. As a first example this method has been applied to soil- and in vitro-grown tubers. Due to the simultaneous analysis of a wide range of metabolites it was immediately apparent that these systems differ significantly in their metabolism. Furthermore, the parallel insight into many pathways allows some conclusions to be drawn about the underlying physiological differences between both tuber systems. As a second example, transgenic lines modified in sucrose catabolism or starch synthesis were analysed. This example illustrates the power of an unbiased approach to detecting unexpected changes in transgenic lines.