Identifying Protein-protein Interaction in Drosophila Adult Heads by Tandem Affinity Purification (TAP)

Genetic screens conducted using Drosophila melanogaster (fruit fly) have made numerous milestone discoveries in the advance of biological sciences. However, the use of biochemical screens aimed at extending the knowledge gained from genetic analysis was explored only recently. Here we describe a method to purify the protein complex that associates with any protein of interest from adult fly heads. This method takes advantage of the Drosophila GAL4/UAS system to express a bait protein fused with a Tandem Affinity Purification (TAP) tag in fly neurons in vivo, and then implements two rounds of purification using a TAP procedure similar to the one originally established in yeast¹ to purify the interacting protein complex. At the end of this procedure, a mixture of multiple protein complexes is obtained whose molecular identities can be determined by mass spectrometry. Validation of the candidate proteins will benefit from the resource and ease of performing loss-of-function studies in flies. Similar approaches can be applied to other fly tissues. We believe that the combination of genetic manipulations and this proteomic approach in the fly model system holds tremendous potential for tackling fundamental problems in the field of neurobiology and beyond.     

仑伐替尼联合TACE对不可切除肝细胞癌患者肿瘤标志物、凋亡分子和血清ST6GAL1、ANG-2、HGF的影响

摘要 目的：探讨仑伐替尼联合肝动脉化疗栓塞术（TACE）对不可切除肝细胞癌患者肿瘤标志物、凋亡分子和血清唾液酸转移酶1（ST6Gal1）、血管生成素-2（ANG-2）、肝细胞生长因子（HGF）的影响。方法：采用随机数字表法将四川绵阳四0四医院2020年3月~2022年12月期间收治的114例不可切除肝细胞癌患者分为对照组（n=57,TACE治疗）和研究组（n=57,仑伐替尼联合TACE治疗）。对比两组疗效、肿瘤标志物[甲胎蛋白（AFP）、糖类抗原199（CA199）、癌胚抗原（CEA）]、血清凋亡分子[B淋巴细胞瘤-2相关X蛋白（Bax）、B淋巴细胞瘤-2基因（Bcl-2）、存活素（Survivin）、半胱氨酸天冬氨酸蛋白酶-4（Caspase-4）]和血清ST6Gal1、ANG-2、HGF水平,并观察两组治疗期间不良反应发生情况。结果：与对照组相比,研究组的临床总有效率更高（P<0.05）。与对照组相比,研究组治疗后AFP、CA199、CEA水平更低（P<0.05）。与对照组相比,研究组治疗后Bcl-2、Survivin水平更低,Bax、Caspase-4水平更高（P<0.05）。与对照组相比,研究组治疗后ST6Gal1、ANG-2、HGF水平更低（P<0.05）。两组不良反应总发生率组间对比未见差异（P>0.05）。结论：仑伐替尼联合TACE用于不可切除肝细胞癌患者,可提高临床治疗效果,调节肿瘤标志物、凋亡分子和血清ST6Gal1、ANG-2、HGF水平,安全性较好。     

A genetic tool kit for cellular and behavioral analyses of insect sugar receptors

Arthropods employ a large family of up to 100 putative taste or gustatory receptors (Grs) for the recognition of a wide range of non-volatile chemicals. In Drosophila melanogaster, a small subfamily of 8 Gr genes is thought to mediate the detection of sugars, the fly''s major nutritional source. However, the specific roles for most sugar Gr genes are not known. Here, we report the generation of a series of mutant sugar Gr knock-in alleles and several composite sugar Gr mutant strains, including a sugar blind strain, which will facilitate the characterization of this gene family. Using Ca²⁺ imaging experiments, we show that most gustatory receptor neurons (GRNs) of sugar blind flies (lacking all 8 sugar Gr genes) fail to respond to any sugar tested. Moreover, expression of single sugar Gr genes in most sweet GRNs of sugar-blind flies does not restore sugar responses. However, when pair-wise combinations of sugar Gr genes are introduced to sweet GRNs, responses to select sugars are restored. We also examined the cellular phenotype of flies homozygous mutant for Gr64a, a Gr gene previously reported to be a major contributor for the detection of many sugars. In contrast to these claims, we find that sweet GRNs of Gr64a homozygous mutant flies show normal responses to most sugars, and only modestly reduced responses to maltose and maltotriose. Thus, the precisely engineered genetic mutations of single Gr genes and construction of a sugar-blind strain provide powerful analytical tools for examining the roles of Drosophila and other insect sugar Gr genes in sweet taste.     

结合GAL4/UAS系统与CyO-GFP平衡子获取表达RNA干扰序列果蝇幼虫并有效干扰Tis11表达

TIS11是转录后调控因子TTP在果蝇中的同源物,在果蝇幼虫免疫、发育和代谢等多种生理过程中都发挥重要作用.为研究TIS11的功能,需要利用GAL4/UAS系统获得整体高干扰效率的Tis11 RNAi果蝇幼虫．为平衡GAL4转基因果蝇高活性启动子的致死效应,需要使用带有成蝇卷翅标记CyO的第二染色体的平衡子,但CyO标记在幼虫中无可见表型,因此无法区分杂交幼虫的基因型．为解决这一问题,引入了带有CyO-GFP标记的平衡子．携带CyO-GFP平衡子的G-Actin果蝇与携带Tis11 RNAi序列的101765果蝇杂交,杂交幼虫可以通过GFP标记进行区分,剔除带有CyO-GFP平衡子的幼虫,从而挑选出表达Tis11 RNAi序列的幼虫,最后经real-time PCR检测所得幼虫具有整体高干扰效率．     

Characterization of the Drosophila gene-switch system in aging studies: a cautionary tale

Genetic studies have shown that in many model organisms, single gene mutations can dramatically influence aging. Systems that allow researchers to control a gene's temporal and spatial expression pattern, known as inducible gene-expression systems, are a valuable asset for the study of the influence of single genes on aging. One inducible gene-expression system reported to allow temporal and tissue-specific control of gene expression in Drosophila is the Gene-Switch system. However, this system has not been extensively characterized in the context of aging research. This report uses six Gene-Switch strains to examine the tissue localization and amount of expression achievable in the major tissue types of the fly. The quantitative analysis of adult flies fed with inducer through life reveals that the levels of expression are influenced by both the inducer concentration and the age of the animal in a strain-specific manner. Furthermore, the relationship between inducer concentration and expression level is unique to each strain and, in some cases, to each gender. The analysis of the spatial expression patterns in several strains revealed expression in more tissue types than previously assumed. Finally, most Gene-Switch strains display expression in the absence of inducer during development and/or during adulthood. These findings have important implications that may reconcile contradictions reported in studies investigating the effects of dFOXO on longevity. This study is an important guide to the design and interpretation of aging studies based on the Gene-Switch system.     

In vivo dynamics of galactose metabolism in Saccharomyces cerevisiae: metabolic fluxes and metabolite levels

The dynamics of galactose metabolism in Saccharomyces cerevisiae was studied by analyzing the metabolic response of the CEN.PK 113-7D wild-type strain when exposed to a galactose pulse during aerobic growth in a galactose-limited steady-state cultivation at a dilution rate of 0.097 h(-1). A fast sampling technique and subsequent methanol-chloroform/solid phase extractions were applied for in vivo measurements of the dynamic changes of the AMP, ADP, ATP levels and the sugar phosphates of the Leloir pathway. The ATP level was found to be significantly lower for yeast growing under galactose limitation (0.37 +/- 0.05 micromol/g CDW) than what has been reported for growth under glucose limitation. The galactose pulse of 5.58 mM was consumed within 40 min (t = 40) and 7 min after the pulse was added cell growth stopped. Subsequently, the cells started to grow and at t = 30 the specific growth rate had recovered to half the steady-state growth rate (0.047 h(-1)). To evaluate the change in flux distribution at steady state and during the galactose transient, a stoichiometric model describing the aerobic metabolism of S. cerevisiae was set up for quantification of the metabolic fluxes. At t = 7 the flux entering the TCA cycle was low and acetate and ethanol started to be excreted to the extracellular medium. During recovery of cell growth the flux entering the TCA cycle increased again, and at t = 30 this flux exceeded the corresponding steady-state flux. During the pulse an enhanced level of Gal-1P was measured, which may be responsible for a toxic metabolic response in S. cerevisiae. The increase in the Gal-1P concentration is intensified by the low affinity of Gal7 towards Gal-1P and, hence, under the physiological conditions examined Gal7 seems to exert control over flux through the Leloir pathway.