Detection of a hidden folding intermediate of the third domain of PDZ

The folding pathway of the third domain of PDZ from the synaptic protein PSD-95 was characterized using kinetic and equilibrium methods by monitoring the fluorescence signal from a Trp residue that is incorporated at a near-surface position. Kinetic folding of this domain showed multiple exponential phases, whereas unfolding showed a single exponential phase. The slow kinetic phases were attributed to isomerization of proline residues, since there are five proline residues in this domain. We found that the logarithms of the rate constants for the fast phase of folding and unfolding are linearly dependent on the concentrations of denaturant. The unfolding free energy derived from these rate constants at zero denaturant was close to the value measured using the equilibrium method, suggesting the absence of detectable sub-millisecond folding intermediates. However, native-state hydrogen exchange experiments detected a partially unfolded intermediate under native conditions. It was further confirmed by a protein engineering study. These data suggest that a hidden intermediate exists after the rate-limiting step in the folding of the third domain of PDZ.     

Human renal clear cell carcinoma: Establishment and characterization of a new cell line (G-2101)

Summary A human cell line has been established from a renal adenocarcinoma rib metastasis of a 58-y-old male. This cell line has been maintained in continuous culture for 20 mo. through more than 50 passages. It displays simulataneous expression of the intermediate filaments cytokeratin and vimentin. Flow cytometric analysis of DNA content reveals a major hyperdiploid population. This work was supported in part by a grant from Triton Biosciences, Inc.     

Schistosoma incognitum from Cikurai,West Java,Indonesia

Schistosoma incognitum is reported for the first time from West Java, Indonesia where 84% of ricefield rats, Rattus argentiventer, were infected. Radix auricularia rubiginosa snails were intermediate hosts. The adult stage of the Javanese strain of S. incognitum and lesions in naturally-infected rodents are described. Rattus exulans, Rattus norvegicus and Mus musculus were experimentally infected. Epizootiology is similar to that described in other countries.     

Might SARS-CoV-2 Have Arisen via Serial Passage through an Animal Host or Cell Culture?

Despite claims from prominent scientists that SARS-CoV-2 indubitably emerged naturally, the etiology of this novel coronavirus remains a pressing and open question: Without knowing the true nature of a disease, it is impossible for clinicians to appropriately shape their care, for policy-makers to correctly gauge the nature and extent of the threat, and for the public to appropriately modify their behavior. Unless the intermediate host necessary for completing a natural zoonotic jump is identified, the dual-use gain-of-function research practice of viral serial passage should be considered a viable route by which the novel coronavirus arose. The practice of serial passage mimics a natural zoonotic jump, and offers explanations for SARS-CoV-2's distinctive spike-protein region and its unexpectedly high affinity for angiotensin converting enzyme (ACE2), as well as the notable polybasic furin cleavage site within it. Additional molecular clues raise further questions, all of which warrant full investigation into the novel coronavirus's origins and a re-examination of the risks and rewards of dual-use gain-of-function research.     

松叶猪毛菜NADP-苹果酸酶基因家族及启动子克隆分析北大核心CSCD

NADP-苹果酸酶(NADP-ME)是C_(4)植物的关键光合酶,在生物和非生物胁迫中发挥了重要的作用。为了进一步研究该酶编码基因的功能,该研究以典型荒漠C_(3)-C_(4)中间型植物松叶猪毛菜为研究对象,在克隆得到NADP-ME家族基因序列的基础上,研究其表达部位及在非生物胁迫下的表达模式,并克隆其启动子序列分析响应非生物胁迫的元件差异。结果表明:(1)成功获得松叶猪毛菜3个NADP-MEs,命名为SaNADP-ME1、SaNADP-ME2和SaNADP-ME4,CDS序列长度分别为1755、1758和1941 bp。(2)SaNADP-ME1主要在根中表达,SaNADP-ME2和SaNADP-ME4主要在叶中表达;在ABA、NaCl、NAHCO_(3)和PEG_(6000)胁迫下松叶猪毛菜幼苗中3个NADP-MEs均可被诱导表达,且SaNADP-ME2和SaNADP-ME4的响应表达模式相似。(3)成功克隆得到SaNADP-ME1、SaNADP-ME2和SaNADP-ME4启动子区域2351、1655和2887 bp。生物信息学分析发现它们都含有基本启动子元件以及响应外界刺激的元件。     

An analysis of tobacco mosaic virus replicative structures synthesized in vitro

Summary The RNA structures synthesized in vitro by a crude enzyme complex from tobacco mosaic virus (TMV)-infected leaves have been analyzed; the major viral-specific products were similar to TMV-replicative form (RF) and-replicative intermediate (RI) in electrophoretic behavior and ribonuclease sensitivity. Synthesis of these RF-like and RI-like structures neither required nor responded to added viral RNA, but did require all four ribonucleotide triphosphates. Enriched radiolabeled RF-like and RI-like RNA fractions were isolated from non-denaturing agarose gels by electroelution and hybridized to a collection of TMV sequences cloned into bacteriophage M13. Enriched RF-RNA hybridized to sequences of both plus and minus polarity, while enriched RI-RNA hybridized only to inserts of minus polarity, indicating only plus strand synthesis in this fraction. Most of the label incorporated into the plus strand of the enriched RF-RNA was found near the 3-end of this strand, while most of the label incorporated into enriched RI-RNA was found several hundred bases from the 5-end of the plus strand.Paper presented at the first International Congress of Plant Molecular Biology (Savannah, GA, 1985).     

Fusion Experiments of Isolated Generative Cells in Several Angiosperm Species

The generative cells used for fusion experiments were isolated from pollen grains of Zephyranthes candida and Lycoris radiata by “2-step osmotic shock” and from those of Hippeastrum vittata, Hemerocallis minor and Iris tectorum by “weak enzyme treatment” as reported previously. Using PEG method, fusions have been successfully induced between generative cells of the same species mentioned above, between generative cells of Z. candida and L. radiata, between generative cells and petal protoplasts in L. radiata, and between generative cells of L. radiata and hypocotyl protoplasts of Brassica napus. In all cases either homokaryons or heterokaryons could be obtained. Fusion of nuclei was observed sometimes in homokaryons of generative cells in L. radiata. The generative nuclei in fusion products could be well identified by labelling the generative cells before fusion with DAPI. FDA test demonstrated that most of the fusion products were viable. Factors affecting fusion efficiency including cell density, PEG concentration, duration of PEG treatment and effect of calcium ions were studied in fusion of generative cells in Z. candida. Our experiments indicate that isolated generative cells are likely to be deprived of cell wails and may be regarded as a special kind of protoplasts for direct fusion experiments.     

残缺类囊体膜与嵴膜小囊的融合膜结构观察

观察了菠菜叶绿体类囊体膜与残缺膜的表面结构及鼠肝线粒体嵴膜小囊在制备过程中的生成过程,证明了嵴膜小囊可有两种,F_1在膜外侧或膜内侧,它们都可与残缺膜组成镶嵌膜,进行光下磷酸化功能。而F_1在膜外侧的嵴膜小囊与残缺膜的嵌合膜活力更高。     

Structural and mechanistic studies of pesticin, a bacterial homolog of phage lysozymes

Yersinia pestis produces and secretes a toxin named pesticin that kills related bacteria of the same niche. Uptake of the bacteriocin is required for activity in the periplasm leading to hydrolysis of peptidoglycan. To understand the uptake mechanism and to investigate the function of pesticin, we combined crystal structures of the wild type enzyme, active site mutants, and a chimera protein with in vivo and in vitro activity assays. Wild type pesticin comprises an elongated N-terminal translocation domain, the intermediate receptor binding domain, and a C-terminal activity domain with structural analogy to lysozyme homologs. The full-length protein is toxic to bacteria when taken up to the target site via the outer or the inner membrane. Uptake studies of deletion mutants in the translocation domain demonstrate their critical size for import. To further test the plasticity of pesticin during uptake into bacterial cells, the activity domain was replaced by T4 lysozyme. Surprisingly, this replacement resulted in an active chimera protein that is not inhibited by the immunity protein Pim. Activity of pesticin and the chimera protein was blocked through introduction of disulfide bonds, which suggests unfolding as the prerequisite to gain access to the periplasm. Pesticin, a muramidase, was characterized by active site mutations demonstrating a similar but not identical residue pattern in comparison with T4 lysozyme.