Relevance of aquatic environments for hominins: a case study from Trinil (Java, Indonesia)

Knowledge about dietary niche is key to understanding hominin evolution, since diet influences body proportions, brain size, cognition, and habitat preference. In this study we provide ecological context for the current debate on modernity (or not) of aquatic resource exploitation by hominins. We use the Homo erectus site of Trinil as a case study to investigate how research questions on possible dietary relevance of aquatic environments can be addressed. Faunal and geochemical analysis of aquatic fossils from Trinil Hauptknochenschicht (HK) fauna demonstrate that Trinil at ∼1.5 Ma contained near-coastal rivers, lakes, swamp forests, lagoons, and marshes with minor marine influence, laterally grading into grasslands. Trinil HK environments yielded at least eleven edible mollusc species and four edible fish species that could be procured with no or minimal technology. We demonstrate that, from an ecological point of view, the default assumption should be that omnivorous hominins in coastal habitats with catchable aquatic fauna could have consumed aquatic resources. The hypothesis of aquatic exploitation can be tested with taphonomic analysis of aquatic fossils associated with hominin fossils. We show that midden-like characteristics of large bivalve shell assemblages containing Pseudodon and Elongaria from Trinil HK indicate deliberate collection by a selective agent, possibly hominin.     

Dragonfly Assemblages in Arid Tropical Environments: A Case Study from Western Namibia

Dragonflies have been proposed as indicators for the ecosystem health of freshwater wetlands. For their useful functioning as indicators it is, however, necessary to identify species compositions in specific habitats and species-habitat associations, particularly in the tropics, where such knowledge is still weak. We examined the dragonfly species composition of 133 localities in the arid environment of western Namibia. An analysis of nestedness indicated that distinct, and predictable patterns of species associations can be expected. Discriminant analyses revealed that most of the nine habitat types separated by structural and hydrological parameters are well discriminated by their dragonfly assemblages. Spring brooks in particular host a specific assemblage, which is threatened due to the habitat restriction of several species, as well as by recent habitat loss and degradation. Using a hierarchical method of several criteria we demonstrated the selection of a set of potential indicator species from the species set, most of these being useful indicators for spring brook assemblages. The conservation status of certain habitats and species is discussed. We propose that dragonflies will have a high indicator potential for threatened freshwater wetlands in such areas and may also serve as an indication of the sustainable use of water resources including evaluating measures to rehabilitate environments.     

淡水排放对杭州湾湿地浮游动物群落分布的影响

于2010年4月至2011年1月对杭州湾南岸滩涂湿地5个断面(S1-S3为排水区, S4-S5为非排水区)的高潮位和中潮位分别进行浮游动物群落结构的周年调查, 共发现浮游动物38种(轮虫15种, 枝角类4种, 桡足类19种)。排水区浮游动物年平均密度88.89 ind./L, 生物量0.41 mg/L, 非排水区平均密度仅4.21 ind./L, 生物量0.10 mg/L。排水区轮虫和桡足类的第一优势种分别为萼花臂尾轮虫(Brachionus calyciflorus)和汤匙华哲水蚤(Sinocalanus dorrii), 而非排水区第一优势种为中华哲水蚤(Calanus sinicus)。S2-S3断面中潮位的水体营养盐浓度、浮游动物密度和生物量均明显大于高潮位。淡水排放、潮沟径流和潮汐决定了滩涂湿地群落的时空格局, 后两者还解释了排水区中、高潮位间群落结构组成的差异。       

Optimal gillnet sampling design for the estimation of fish community indicators in heterogeneous freshwater ecosystems

Monitoring of biota in heterogeneous ecosystems requires sampling in different habitats and across environmental gradients. The resulting multivariate community data are typically aggregated into one or several indicator values for the entire ecosystem, but the relationship between the robustness of such indicators and sampling effort, including the identification of minimum acceptable sampling designs, is not fully understood.We address this issue for multi-mesh gillnet sampling of freshwater fish communities in deep-valley reservoirs, using data from 29 detailed annual surveys in eight reservoirs in the Czech Republic that account for the inherent longitudinal and depth gradients and the qualitatively different benthic and pelagic habitats. We evaluate the performance of eight sampling scenarios, created by variously reducing the full dataset. To this end, we use 31 fish-based, community-, size- and species-level indicators calculated separately for benthic and pelagic habitats, and fit the relationships between the indicator values based on the reduced and full sampling design using Bayesian generalized linear models.The ability of reduced data to estimate the “true” indicator value across the entire dataset, expressed as the adjusted R² value of the best model for the given indicator, increased with sampling effort. However, the relationships differed between indicators: R² values were higher for abundance-based than for biomass-based indicators. We identified three suitable reduced sampling designs: (1) sampling the entire longitudinal profile in the epilimnion, yielding on average the highest R² values (0.97), (2) same as before but limited to one sampling layer closest to the surface (R² = 0.91), and (3) sampling all depth strata at the farthest points of the longitudinal gradient (i.e., dam and tributary, R² = 0.83). These results demonstrate that, in order to obtain robust estimates of fish community indicators, current gillnet sampling protocols can be optimized to reduce effort and minimize unwanted fish mortality.     

Substrate-inhibitory analysis of the cholinesterase in the freshwater oligochaete Lumbriculus variegatus (O.F. Műller, 1773; Lumbriculidae,Oligochaeta)

The substrate-inhibitory analysis has shown that single “atypical” cholinesterase (ChE) presents in tissues of freshwater oligochaete Lumbriculus variegatus (O.F. M?ller). This enzyme differs both from “typical” acetylcholinesterase (AChE) and butyrylcholinesterase (BuChE). Specific activity of oligochaete ChE ranges 55–100 μmol ATCh g⁻¹ tissue min⁻¹ or 0.7–1 μmol ATCh mg⁻¹ protein min⁻¹, ratio of maximal rates (V) of substrate hydrolysises is 100:72:71:83 for acetyl-, propionyl-, butyryl- and acetyl-β-metylthiocholine respectively. Values of Michaelis constant (K_m) for these substrates are (1.9–2.5) × 10⁻⁴ M. The bimolecular enzyme inhibition rate constants (k_II) for organophosphorus inhibitors paraoxon, DDVP, and iso-OMPA are 10⁷, 10⁶ и 10³ mol⁻¹ | min⁻¹. ATCh and BuTCh exhibit the effect of substrate inhibition of ChE activity, while PrTCh and MeTCh do not.     

Environmental restoration effects of Ranunculus sceleratus L. in a eutrophic sewage system

This study investigated the environmental restoration effects of Ranunculus sceleratus in a sewage system microcosm trial, including the removal of pollutants and algal inhibition. We compared the removal of pollutants by R. sceleratus in a eutrophic sewage system in the presence and the absence of algae. The rate of removal without algae was 16.2–20.5% of that with algae. ${\text{NH}}_4^{+}–\text{N}$ was removed most readily by R. sceleratus. The effects of R. sceleratus on the growth of Microcystis aeruginosa were also investigated in two allelopathic modes. The level of algal inhibition after the addition of an extract of Ranunculus scleratus was 57.1–78.9% greater than that in a co-culture test. To understand the role of allelopathy interference with algal development, we also determined the total flavonoid contents of plants, which ranged from 3.57 g to 20.19 g per plant. The cell density of Microcystis aeruginosa was negatively correlated with the total flavonoids in R. sceleratus, although aquatic macrophytes may contain other allelochemicals involved with algal inhibition in addition to flavonoid compounds. The environmental effects of R. sceleratus were significantly correlated with its growth stage (or water retention time), plant height, and biomass. This study suggests that R. sceleratus has potential for the low-effort and sustainable management of freshwaters, particularly the removal of nutrient pollutants and the reduction of excessive algal growth, which may be attributable to allelochemicals such as flavonoids. The in situ environmental restoration effects of R. sceleratus require further investigation at the ecosystem level.     

Chironomus plumosus larvae increase fluxes of denitrification products and diversity of nitrate-reducing bacteria in freshwater sediment

Benthic invertebrates affect microbial processes and communities in freshwater sediment by enhancing sediment-water solute fluxes and by grazing on bacteria. Using microcosms, the effects of larvae of the widespread midge Chironomus plumosus on the efflux of denitrification products (N₂O and N₂ + N₂O) and the diversity and abundance of nitrate- and nitrous-oxide-reducing bacteria were investigated. Additionally, the diversity of actively nitrate- and nitrous-oxide-reducing bacteria was analyzed in the larval gut. The presence of larvae increased the total effluxes of N₂O and N₂ + N₂O up to 8.6- and 4.2-fold, respectively, which was mostly due to stimulation of sedimentary denitrification; incomplete denitrification in the guts accounted for up to 20% of the N₂O efflux. Phylotype richness of the nitrate reductase gene narG was significantly higher in sediment with than without larvae. In the gut, 47 narG phylotypes were found expressed, which may contribute to higher phylotype richness in colonized sediment. In contrast, phylotype richness of the nitrous oxide reductase gene nosZ was unaffected by the presence of larvae and very few nosZ phylotypes were expressed in the gut. Gene abundance of neither narG, nor nosZ was different in sediments with and without larvae. Hence, C. plumosus increases activity and diversity, but not overall abundance of nitrate-reducing bacteria, probably by providing additional ecological niches in its burrow and gut.     

Complete genomes of freshwater sulfur oxidizers Sulfuricella denitrificans skB26 and Sulfuritalea hydrogenivorans sk43H: Genetic insights into the sulfur oxidation pathway of betaproteobacteria

Despite detailed studies of marine sulfur-oxidizing bacteria, our knowledge concerning their counterparts in freshwater lake ecosystems is limited. Genome sequencing of the freshwater sulfur-oxidizing betaproteobacteria Sulfuricella denitrificans skB26 and Sulfuritalea hydrogenivorans sk43H have been completed. Strain skB26 possessed a circular plasmid of 86.6-kbp in addition to its chromosome, and an approximate 18-kbp region of the plasmid was occupied by an arxA-like operon, encoding a new clade of anaerobic arsenite oxidase. Multilocus sequence analysis showed that strain skB26 could not be assigned to any existing order; thus a novel order, Sulfuricellales, is proposed. The genomes of strains skB26 and sk43H were examined, focusing on the composition and the phylogeny of genes involved in the oxidation of inorganic sulfur compounds. Strains skB26 and sk43H shared a common pathway, which consisted of Sqr, SoxEF, SoxXYZAB, Dsr proteins, AprBA, Sat, and SoeABC. Comparative genomics of betaproteobacterial sulfur oxidizers showed that this pathway was also shared by the freshwater sulfur oxidizers Thiobacillus denitrificans and Sideroxydans lithotrophicus. It also revealed the presence of a conserved gene cluster, which was located immediately upstream of the betaproteobacterial dsr operon.