Identification and characterization of ecologically significant prokaryotes in the sediment of freshwater lakes: molecular and cultivation studies

The aim of this review is to interpret recent studies in which molecular methods were used to identify and characterize prokaryotes in lake sediments and related habitats. In the first part studies based on the phylogenetic diversity of prokaryotes found in lacustrine habitats are summarized. The application of various cultivation-independent methods for the characterization of distinct groups of sediment bacteria is exemplified with morphologically conspicuous, colorless sulfur bacteria in the second part of this review. Finally, traditional and recently developed methods are described which could be used for linking the function of microbial populations with their identification. The potential of these approaches for the study of lake sediments is discussed in order to give a perspective for future studies in this habitat.     

The freshwater snails (Gastropoda) of Iran, with descriptions of two new genera and eight new species

Using published records and original data from recent field work and revision of Iranian material of certain species deposited in the collections of the Natural History Museum Basel, the Zoological Museum Berlin, and Natural History Museum Vienna, a checklist of the freshwater gastropod fauna of Iran was compiled. This checklist contains 73 species from 34 genera and 14 families of freshwater snails; 27 of these species (37%) are endemic to Iran. Two new genera, Kaskakia and Sarkhia, and eight species, i.e., Bithynia forcarti, Bithynia starmuehlneri, Bithynia mazandaranensis, Pseudamnicola georgievi, Kaskakia khorrasanensis, Sarkhia sarabensis, Valvata nowsharensis and Acroloxus pseudolacustris are described as new to science; Ecrobia grimmi (Clessin & Dybowski, 1888), Heleobia dalmatica (Radoman, 1974) and Hippeutis complanatus (Linnaeus, 1758) are reported for the first time from Iran. Additional field work is highly desirable for a more appropriate evaluation of the extant freshwater snail biodiversity in Iran.     

Spatial dynamics and morphological plasticity of common reed (Phragmites australis) and cattails (Typha sp.) in freshwater marshes and roadside ditches

Over the last decades, the abundance of common reed has significantly increased in freshwater wetlands of eastern North America, and stands of this species are now commonly alternating with stands of cattails. Since these species share many characteristics, the contact zone between common reed and cattail stands may witness strong interspecific interactions. We surveyed stand dynamics in roadside ditches and freshwater marshes at these contact zones over three years, and we examined the morphological plasticity in response to neighbors. Results indicate that common reed is clearly gaining ground over time, while cattails stands are retreating. We also found annual variability in the spatial dynamics, suggesting that other factors, such as the effect of weather conditions on water level, may affect population processes. Interspecific interactions had a detrimental effect on both common reed and cattail biomass. However, common reed showed morphological plasticity in shoot height, number of nodes, and internodes length, while cattails did not. Our observations suggest that common reed has a net competitive advantage over cattails in roadside ditches and freshwater marshes.     

Molecular characterization of heat shock protein 70 genes in the liver of three warm freshwater fishes with differential tolerance to microcystin-LR

Heat shock protein 70 (HSP70) protect cell from oxidative stress by preventing the irreversible loss of vital proteins and facilitating their subsequent regeneration. Silver carp (Hypophthalmichthys molitrix), grass carp (Ctenopharyngodon idellus), and Nile tilapia (Oreochromis nilotica) are three warm freshwater fishes with differential tolerance to microcystin-LR (MC-LR). Full-length cDNAs encoding the HSP70 were cloned from the livers of the three fishes. The HSP70 cDNAs of silver carp, grass carp, and Nile tilapia were 2356, 2348, and 2242 bp in length and contained an open-reading frame of 1950 bp (encoding a polypeptide of 649 amino acids), 1950 bp (649 amino acids), and 1917 bp (638 amino acids), respectively. Like mammalian HSP70, the HSP70 of the three fish was also composed of an ATPase domain from residues 1 to 383 (44 kDa), substrate peptide binding domain from residues 384 to 544 (18 kDa), and a C-terminus domain from residues 545 to 649 (10 kDa). The relatively high conservation of HSP70 sequences among different vertebrates is consistent with their important role in fundamental cellular processes. Using beta-actin as an external control, RT-PCR within the exponential phase was conducted to determine the constitutive and inducible expression level of HSP70 gene among the three fishes (6-12 g) intraperitoneally injected with MC-LR (50 μg kg(-1) body weight). Both constitutive and inducible liver mRNA levels of the fish HSP70 genes showed positive relationships with their tolerance to MC-LR: highest in Nile tilapia, followed by silver carp, and lowest in grass carp. The differential expression pattern of liver HSP70 genes in the three fish indicated a potential role of HSP70 in the detoxification process of MC-LR.     

Seasonal dynamics of fatty acid composition in female northern pike (Esox lucius L.)

Seasonal changes in the fatty acid composition of neutral and polar lipids were measured in the ovary, liver, white muscle, and adipopancreatic tissue of northern pike. The role of environmental and physiological factors underlying these changes was evaluated. From late summer (August–September) to winter (January–March), the weight percentage of n-3 polyunsaturated fatty acids (especially 22:6n3) declined significantly in the neutral lipids of all somatic tissues examined. However, large quantities of n-3 polyunsaturated fatty acids accumulated in the recrude cing ovaries during fall and the weight percentage of n-3 polyunsaturated fatty acids in ovary polar lipids also increased significantly. Additionally, the n-3 polyunsaturated fatty acid content of somatic polar lipids increased significantly during fall due to increases in the total polar lipid content of the somatic tissues. This suggests that during fall n-3 polyunsaturated fatty acid are diverted away from somatic neutral lipids and thereby conserved for use in ovary construction and for incorporation into tissue polar lipids. The percentage of n-3 polyunsaturated fatty acid in ovary neutral lipids also declined during fall and early winter, perhaps as an adaptation to conserve these fatty acids for storage in oocyte polar lipids and later incorporation into cellular membranes of the developing embryo. Reductions in the n-3 polyunsaturated fatty acids content of somatic and ovarian neutral lipids during fall were compensated for specifically by increases in the percentage of monounsaturated fatty acids rather than saturated fatty acids. This suggests that the ratio of saturated to unsaturated fatty acids in pike neutral lipid, is regulated physiologically, and hence may influence the physiological functioning of these lipids. During fall and early winter the percentage of saturated fatty acids declined significantly in the polar lipids of all tissues examined. This change was consistent with the known effects of cold acclimation on the fatty acid composition of cellular membranes. As the ovaries were recrudescing from September to January, liver polar lipids exhibited significant decreases in the percentage of total polyunsaturated fatty acids and n-3 polyunsaturated fatty acids and increases in monounsaturated fatty acids, and acquired a fatty acid composition very similar to that of ovary polar lipids. Therefore, seasonal changes in the percentage of polyunsaturated and monounsaturated fatty acids in liver polar lipids probably reflect the liver's role in vitellogenesis rather than the effects of temperature on membrane fatty acid composition. At all times of year, the fatty acid compositions of white muscle and adipopancreatic tissue neutral lipids were very similar, which may indicate a close metabolic relationship between these lipid compartments.Abbreviations AP adipopancreatic - BHT butylated hydroxytoluene - CI confidence interval - EFA essential fatty acids - MUFA monounsaturated fatty acids - NL neutral lipids - PL polar lipids - PUFA polyunsaturated fatty acids - SFA saturated fatty acids     

Dramatic decline of two freshwater killifishes,main anthropogenic drivers and appropriate conservation actions

Freshwater fish biodiversity loss in the Mediterranean Basin is regarded as among the highest globally, with long-term population data sets required to discern long-term population trends of threatened species, in order to design appropriate conservation interventions. In this study, we assessed the population trends of two threatened freshwater fishes, Valencia letourneuxi and Valencia robertae, employing the most recent and largest compiled database to date (16 populations over 14 years). We applied the innovative methodology of the Living Planet Index (LPI) to assess the average rate of change over time across a set of V. letourneuxi and V. robertae populations in Greece. The LPI application revealed a dramatic decline of both species, with V. letourneuxi declining by 97.7% and V. robertae by 91.0%. Beta regression showed that water pollution, eutrophication and alien Eastern mosquitofish Gambusia holbrooki’ presence were the three best fitting predictors of the decline of V. letourneuxi and V. robertae populations. Based on the above, we outline the conservation measures urgently required to revert the near collapse of the populations of the two species. Conservation actions include the strict protection of the their lowland spring habitats, habitat improvement through changes in water management and agricultural practices, mosquitofish invasion prevention and mosquitofish impact mitigation measures, as well as translocation actions and captive breeding. Lastly, the association patterns of the proposed conservation actions with anthropogenic pressures and their expected outcomes were analysed through an alluvial diagram, providing insights on the scale of pressures mitigated by conservation actions and on their conservation benefits.     

Current knowledge of Chytridiomycota diversity in Northern Europe and future research needs

Chytridiomycota is the most species-rich phylum of basal lineage fungi involved in vital processes in both terrestrial and aquatic ecosystems. Still, the diversity and richness of this group remains cryptic. In Northern Europe, few species have been recorded despite the numerous intact lake systems covering this region. Recent classifications of early diverging fungal lineages differ considerably on the diversity of chytrid species and their taxonomic placement. Here, we present the current knowledge of the Chytridiomycota diversity within Northern Europe by using the Global Biodiversity Information Facility (GBIF) data and compare how this diversity distributes across two recently proposed classification systems. Furthermore, we illustrate how various sampling types are influencing the recorded classification levels. Lastly, we discuss how metabarcoding has contributed to the overall understanding of the Chytridiomycota diversity in revealing the “dark matter fungi”, and we point out future research needs in the field of aquatic mycology in the Nordic region.     

The role of environmental sodium chloride relative to calcium in gill morphology of freshwater salmonid fish

Summary Ultrastructure, distribution and abundance of cell types were examined in the gills of two freshwater salmonid species, Salmo fario and Salmo gairdneri, in media of selected ion content. In plain hard water (PW) with high concentrations of Ca²⁺, Na⁺, and Cl^-, gill chloride cells (CC) were confined to trailing edges and interlamellar regions of filaments whereas in mountain soft water (MW) with low concentrations of Ca²⁺, Na⁺, and Cl^-, CC were more numerous on filaments and covered lamellae, particularly along trailing edges. CC also appeared on lamellae of PW trout acclimated to soft water in a pond. This proliferation was not alleviated when ambient Ca²⁺ levels were raised (MW + Ca²⁺) but regressed in elevated NaCl media (MW + NaCl). The regression process involved an initial covering of CC by pavement cells followed by cytolysis and then eventual disappearance of CC. In MW, mucous cells were distributed mainly on trailing edges and, to a lesser extent, leading edges of filaments; they were absent from lamellae regardless of external ion levels.The results of this study shed some light on the functional significance of CC in freshwater fish. It is suggested that proliferation of CC is an adaptive response to dilute freshwater (i.e. [NaCl]<0.1 mequiv·1^-1).     

Evaluating regional water security through a freshwater ecosystem service flow model: A case study in Beijing-Tianjian-Hebei region,China

Freshwater ecosystem service is essential to human’s survival and development. Many studies have documented the spatial differences in the supply and demand of ecosystem services and proposed the concept of ecosystem services flows. However, few studies characterize freshwater ecosystem service flow quantitatively. Therefore, our paper aims to quantify the effects of freshwater ecosystem service flow on downstream areas. We developed a freshwater ecosystem service flow model and applied it in the Beijing–Tianjin–Hebei (BTH) region, China, for the year of 2000, 2005, and 2010. We assessed the regional water security with an improved freshwater security index by integrating freshwater service provision, consumption and flow; and found that most areas of the BTH region (69.2%) were affected by upstream freshwater flows. The areas achieving water security in the region also expanded to 66.9%, 66.1%, and 71.3%, which were 6.4%, 6.8% and 5.7% increments compared to no-flow situation, in 2000, 2005 and 2010, respectively. Setting quota for human water consumption is suggested to further improve water security. These results highlight the need to fully understand the connections between distant freshwater ecosystem service provision and local freshwater ecosystem service consumption. This approach may also help managers to choose more sustainable strategies for critical freshwater resource management across different regions.