Error in Estimation of Rate and Time Inferred from the Early Amniote Fossil Record and Avian Molecular Clocks

The best reconstructions of the history of life will use both molecular time estimates and fossil data. Errors in molecular rate estimation typically are unaccounted for and no attempts have been made to quantify this uncertainty comprehensively. Here, focus is primarily on fossil calibration error because this error is least well understood and nearly universally disregarded. Our quantification of errors in the synapsid–diapsid calibration illustrates that although some error can derive from geological dating of sedimentary rocks, the absence of good stem fossils makes phylogenetic error the most critical. We therefore propose the use of calibration ages that are based on the first undisputed synapsid and diapsid. This approach yields minimum age estimates and standard errors of 306.1±8.5 MYR for the divergence leading to birds and mammals. Because this upper bound overlaps with the recent use of 310 MYR, we do not support the notion that several metazoan divergence times are significantly overestimated because of serious miscalibration (sensu Lee 1999). However, the propagation of relevant errors reduces the statistical significance of the pre-K–T boundary diversification of many bird lineages despite retaining similar point time estimates. Our results demand renewed investigation into suitable loci and fossil calibrations for constructing evolutionary timescales.[Reviewing Editor: Martin Kreitman]     

Atmospheric Phosphorus Deposition in Ashiu, Central Japan – Source Apportionment for the Estimation of True Input to a Terrestrial Ecosystem

Atmospheric bulk depositions of soluble reactive phosphorus (SRP), soluble unreactive phosphorus (SUP), particulate inorganic phosphorus (PIP), particulate organic phosphorus (POP), total phosphorus (TP) and some other dissolved and particulate components were monitored for 3 years in Ashiu, Central Japan. The mean bulk depositions of SRP, SUP, PIP, POP, TP, dissolved components (Na, Mg, nss-Ca, K, V, Mo, nss-SO₄) and particulate components (Al, Fe, Ti, Ca, Mg, Mn, Ba, Sr, Zn) were 175, 76, 136, 397, 783, 156,000, 10,900, 7450, 5470, 10.3, 1.52, 40,100, 13,200, 3590, 2630, 576, 624, 42.3, 30.2, 17.4, 8.2 μmol m⁻² year⁻¹, respectively. The value for TP deposition was in the lower range of previous literature. The low P deposition probably reflected the method applied to reduce the contribution of local particles, including (1) placement of samplers off the ground surface, (2) installation of multiple samplers, and (3) rejection of contaminated samples. Al data suggested that 15 ± 5% of TP was brought by lithogenic dust from East Eurasia. Nss-SO₄ and Mo data and air-mass backward trajectories suggested that 39 ± 4% of TP was derived from coal combustion in China. It was speculated that the rest (47 ± 6%) of the TP deposition might be predominantly attributed to the contribution of local biogenic particles. Net atmospheric TP input (lithogenic dust and fossil fuel combustion) was almost equal to the TP outflow from Japanese forests on granitic soils.     

松科冷杉属植物的化石历史和现代分布

冷杉是北半球阴暗针叶林的优势种和建群种,现全世界共有52种1亚种12变种,在北半球形成南欧、北美和东亚三个分布中心,这三个地区也是冷杉属化石最丰富的地区。在垂直分布上,冷杉集中分布于1000～2000m（15种）和2500～4000m（13种）两个海拔地段。在中国,冷杉植物呈南北间断分布,集中分布在横断山地区。冷杉属的特有现象和孑遗分布现象都十分突出,有7个种呈孑遗分布。根据冷杉属的地史分布和现代分布的研究并结合最新的系统演化资料,本文推测冷杉属于白垩世中期起源于北半球的中高纬度地区,始新世以后,随着全球气候的变冷,逐步向南迁移,由于喜马拉雅山脉、阿尔卑斯山、落基山脉抬升及东亚季风气候的出现以及第四纪冰期的影响而形成了现代间断的分布格局。冷杉与银杉、金钱松等其它松科植物的形成模式十分相似。     

New specimens of the early Eocene stem group galliform Paraortygoides (Gallinuloididae), with comments on the evolution of a crop in the stem lineage of Galliformes

Two new specimens of the fossil stem group galliform Paraortygoides messelensis Mayr 2000 (Gallinuloididae) are described from the Middle Eocene of Messel in Germany, including a complete skeleton in which the hitherto unknown skull of this species is preserved. The shorter and more protruding crista deltopectoralis of the humerus, also for the first time visible in one of the new specimens, shows gallinuloidids to be the sister taxon of all other, extinct and extant, galliform birds. Gallinuloidids distinctly differ from modern Galliformes in several other plesiomorphic osteological features, mainly of the pectoral girdle, of which the absence of a spina interna on the sternum is here reported for the first time. It is assumed that major evolutionary transformations in the stem lineage of Galliformes are related to the evolution of a large crop, which appears to have been absent in gallinuloidids. The vegetarian food component of gallinuloidids thus probably mainly consisted of soft plant matter rather than coarse material such as seeds.     

Taphonomic windows and molluscan preservation

Recent studies on silicified fossil biotas have suggested that substantial skewing of the molluscan record resulted from early aragonite dissolution in mid-outer carbonate ramp settings. If those rare skeletal lagerstätten are representative, then the quality and completeness of the molluscan record are thrown into doubt. Yet database studies suggest that the bivalve fossil record is actually relatively complete. If so, then biodiversity must be captured by other processes that preserved shells vulnerable to early dissolution, and which operated on a relatively high frequency, i.e., less than the species duration for bivalves.Storm beds, shell plasters and submarine hardgrounds are identified as fossil deposits that can preserve the labile aragonitic component of the fauna and thus represent potential taphonomic windows. Many storm event beds include rich accumulations of shelly benthos. Differences between storm bed faunas and those of the background facies could reflect transportation effects. However, some storm bed assemblages are rich in originally aragonitic infaunal bivalves that are not represented in background facies or more proximal shelf equivalents, and here rapid burial and removal of organic matter by winnowing may be the keys to aragonite shell preservation. Despite Palaeozoic to Cenozoic changes in the thickness and frequency of shell beds that reflect the predominant bioclast producers, shallow infaunas are commonly concentrated together with epifauna in such deposits.Some low energy, organic-rich mud-dominated settings are associated with preservation of aragonitic molluscs. Infaunal bivalves are a prominent component of shell plasters or pavements in such settings, linked to episodic bottom water anoxia. Decaying algal blooms drew the redox boundary up above the sediment–water interface, and brought populations of infaunal bivalves to the surface where they died. Isolated from the oxic taphonomically active zone, the shells were not dissolved and were buried as thin shell layers. In similar settings, aragonitic shells were preserved as moulds through early pyritisation, or even through preservation of original shell aragonite.In oxic environments, bioturbational reworking of surface sediment destroyed moulds of aragonitic shells after early dissolution. In some hardgrounds, these delicate moulds were preserved due to synsedimentary cementation, probably using carbonate released by aragonite dissolution. The examples included here come from both intervals of “calcite” and “aragonite” seas, and it is not possible to assess whether the saturation state (with respect to aragonite) of the ambient sea water played a role in the selective removal of aragonitic shells.While taphonomic windows may have captured the diversity of individual groups, it is clear from quantitative data involving skeletal lagerstätten that the scale of loss from early aragonite dissolution has drastically altered the trophic composition of some fossil assemblages commonly used as the basis for reconstructions of past communities.     

Permineralized rhizomes of the Osmundaceae (Filicales): Diversity and tempo-spatial distribution pattern

The family Osmundaceae is among the most primitive ferns of the Filicales, with an extensive fossil record dating back to the Late Paleozoic. Numerous fossil osmundaceous rhizomes have been documented in the geological history. However, the diversity, variation and distribution pattern of permineralized rhizomes remain poorly known. Here we intend to analyze the fossil records with regard to the diversity and distribution pattern of the osmundaceous rhizomes based on available data. To date, about 83 species ascribed to 14 genera of fossil osmundaceous rhizomes have been described worldwide, assigned to two subfamilies, namely, Thamnopteroideae and Osmundoideae. Geologically, two groups (i.e., Thamnopteroideae and Palaeosmunda) have been reported in the Permian. All the Triassic taxa are from the southern hemisphere. Jurassic osmundaceous rhizomes are abundant and widespread throughout the world, most dominant in the southern hemisphere. During the transition of Jurassic to Cretaceous, the diversity of osmundaceous rhizomes declined rapidly. In the Cretaceous, however, the osmundaceous rhizomes from the northern hemisphere surpass those from the southern hemisphere in generic level for the first time. The Cenozoic taxa diversified in the northern hemisphere with the rise of angiosperms. Geographically, the osmundaceous fossil rhizomes have been found in both hemispheres; the major localities include Ural area of the former USSR, Tasmania of Australia, southern Argentina, Antarctica, northern India, central and western part of North America and northern China. We discuss the origin, radiation, and development of the Osmundaceae based on rhizomes, to help further understand the systematic relation and evolutionary history of the family Osmundaceae.     

Fossil insects and ecosystem dynamics in wetlands: implications for biodiversity and conservation

We review the uses of fossil insects, particularly Coleoptera (beetles) and Chironomidae (non-biting midges) from ancient deposits to inform the study of wetland ecosystems and their ecological and restoration processes. In particular, we focus on two contrasting ecosystems, drawing upon research undertaken by us on British raised mire peats and shallow lake systems, one an essentially terrestrial ecosystem, the other aquatic, but in which wetland insects play an important and integral part. The study of raised mire peats suggests that faunal stability is a characteristic of these wetland systems, over what appear to be extensive periods of time (up to several millennia), whilst studies of shallow lake ecosystems over recent timescales indicates that faunal instability appears to be more common, usually driven by increasing eutrophication. Drawing upon a series of fossil Coleoptera records spanning several thousand years from Hatfield Moors, south Yorkshire, we reconstruct in some detail the mire’s ontogeny and fluctuations in site hydrology and vegetation cover, illustrating the intimate association between substrate, topography and peat development. A comparison between fossil and modern beetle populations indicates that the faunal characteristics of this mire and its adjacent neighbour, Thorne Moors, become established during the early phases of peat development, including its rare endemics, and that the faunal biodiversity on the sites today is dictated by complex site histories. The over-riding characteristic of these faunas is of stability over several thousand years, which has important implications for the restoration of degraded sites, especially those where refugial areas are limited. In contrast, analyses of fossil Chironomidae from shallow lakes allow researchers to track changes in limnological status and while attempts have been made to reconstruct changes in nutrient levels quantitatively, the chironomids respond indirectly to such changes, typically mediated through complex ecosystem dynamics such as changes in fish and/or macrophyte communities. These changes are illustrated via historic chironomid stratigraphies and diversity indices from a range of shallow lakes located across Britain: Slapton Ley, Frensham Great Pond, Fleet Pond, Kyre Pool and Barnes Loch. These sites have shown varying degrees of eutrophication over recent timescales which tends to be associated with a decline in chironomid diversity. While complex functional processes exist within these ecosystems, our evidence suggests that one of the key drivers in the loss of shallow lake chironomid diversity appears to be the loss of aquatic macrophytes. Overall, while chironomids do show a clear response to altered nutrient regimes, multi-proxy reconstructions are recommended for a clear interpretation of past change. We conclude that if we are to have a better understanding of biota at the ecosystem level we need to know more of the complex interactions between different insect groups as well as with other animal and plant communities. A palaeoecological approach is thus crucial in order to assess the role of insect groups in ecosystem processes, both in the recent past and over long time scales, and is essential for wetland managers and conservation organisations involved in long term management and restoration of wetland systems     

A Tachyglossid-Like Humerus from the Early Cretaceous of South-Eastern Australia

A partial right humerus has been recovered from the Early Cretaceous (Albian) Eumeralla Formation at Dinosaur Cove in south-eastern Australia. General morphology, size and the presence of a single epicondylar foramen (the entepicondylar) suggest that the bone is from a mammal or an advanced therapsid reptile. The humerus is similar in size, shape and torsion to the equivalent bone of extant and late Neogene echidnas (Tachyglossidae) but, contrary to the situation in extant monotremes, in which the ulna and radius articulate with a single, largely bulbous condyle, it bears a shallow, pulley-shaped (i.e. trochlear-form) ulnar articulation that is confluent ventro-laterally with the bulbous radial condyle. This form of ulnar articulation distinguishes this bone from the humeri of most advanced therapsids and members of several major groups of Mesozoic mammals, which have a condylar ulnar articulation, but parallels the situation found in therian mammals and in some other lineages of Mesozoic mammals. As in extant monotremes the distal humerus is greatly expanded transversely and humeral torsion is strong. Transverse expansion of the distal humerus is evident in the humeri of the fossorial docodont Haldanodon, highly-fossorial talpids and some clearly fossorial dicynodont therapsids, but the fossil shows greatest overall similarity to extant monotremes and it is possible that the peculiar elbow joint of extant monotremes evolved from a condition approximating that of the fossil. On the basis of comparisons with Mesozoic and Cainozoic mammalian taxa in which humeral morphology is known, the Dinosaur Cove humerus is tentatively attributed to a monotreme. However, several apparently primitive features of the bone exclude the animal concerned from the extant families Tachyglossidae and Ornithorhynchidae and suggest that, if it is a monotreme, it is a stem-group monotreme. Whatever, the animal's true affinity, the gross morphology of its humerus indicates considerable capacity for rotation-thrust digging.     

Extension of the Swiss Lateglacial tree-ring chronologies

Fossil wood finds reveal a high resolution paleoclimatic proxy record of Lateglacial and Early Holocene. Eighty-one buried fossil pine stumps have been excavated on the construction site (Gaenziloo) of the A4-highway tunnel through Uetliberg near Zurich (Switzerland). The trees were buried during their lifetime by loamy alluvia washed down from the upper part of the slopes. The stumps have remained well preserved for more than 13,500 years. The cross sections of the trunks were analyzed dendrochronologically. The sections were dated by ¹⁴C, and ¹⁴C age vs. ring number were obtained from decadal sample segments.Three floating chronologies were built. They cover a time span of 428 years in the Mid-Allerød (GAEALLCH_A), 561 years in the Late-Allerød (GAEALLCH_D) and 212 years in the Younger Dryas (GAEYD_A). Visual synchronization, t-values, percentages of parallel variation (‘Gleichlaeufigkeit’) and radiocarbon wiggle matching (¹⁴C age determinations on a decadal scale) as well as a check by the program Cofecha support the validity of the resulting chronologies.The two Allerød-chronologies from Gaenziloo were linked with two chronologies from Daettnau (DAEALCH_1 and DAEALCH_2) published by Kaiser, K.F. (1993. Beiträge zur Klimageschichte vom Hochglazial bis ins frühe Holozän, rekonstruiert mit Jahrringen und Molluskenschalen aus verschiedenen Vereisungsgebieten. Ziegler Druck- und Verlags-AG, Winterthur. 206pp). They extend the existing floating Swiss chronology in the Late-Allerød by a total of 186 years. Unfortunately independent chronology GAEYD_A does not overlap with the actual absolute chronology developed by the tree-ring laboratory of the University of Hohenheim (Friedrich, M. et al., 2004. The 12,460 year Hohenheim oak and pine tree-ring chronology from Central Europe – A unique annual record for radiocarbon calibration and paleo-environment reconstructions. Radiocarbon 46(3), 1111–22.).     

中国浙江新昌化石木研究

本文介绍了发现于中国东南沿海地区浙江省新昌县中生代地层中的一种化石木新种———新昌南洋杉型木 (AraucarioxylonxinchangenseDuansp .nov .)。这种化石木保存在早白垩世馆头组中、下部的紫红色泥砂岩中 ,分布在新昌县城西部 ,南北绵延 2 5公里、东西宽约 2公里的狭长地区。由于在化石木产区曾发现过多种植物化石 ,因而确定了该区在早白垩世时期处于我国的欧洲 中国植物区内 ,属亚热带 热带气候区 ,种种迹象表明此时气候有些干旱。同区发现的松柏目叶化石 ,其气孔构造与南洋杉科有一定的亲缘关系 ,这一点似乎与化石木之属可以对应。